Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G07680

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0042430: indole-containing compound metabolic process0.00E+00
2GO:0033542: fatty acid beta-oxidation, unsaturated, even number0.00E+00
3GO:0045185: maintenance of protein location0.00E+00
4GO:1900409: positive regulation of cellular response to oxidative stress0.00E+00
5GO:0046686: response to cadmium ion5.61E-07
6GO:0006212: uracil catabolic process3.83E-06
7GO:0019483: beta-alanine biosynthetic process3.83E-06
8GO:0009617: response to bacterium4.62E-06
9GO:0006099: tricarboxylic acid cycle1.04E-05
10GO:0043562: cellular response to nitrogen levels1.04E-05
11GO:0001676: long-chain fatty acid metabolic process3.07E-05
12GO:0000162: tryptophan biosynthetic process8.67E-05
13GO:0042742: defense response to bacterium1.03E-04
14GO:0010043: response to zinc ion1.13E-04
15GO:0071456: cellular response to hypoxia1.55E-04
16GO:0051707: response to other organism2.07E-04
17GO:0055114: oxidation-reduction process2.27E-04
18GO:0045454: cell redox homeostasis2.33E-04
19GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline2.87E-04
20GO:0006102: isocitrate metabolic process2.87E-04
21GO:0071586: CAAX-box protein processing2.89E-04
22GO:0080173: male-female gamete recognition during double fertilization2.89E-04
23GO:0055081: anion homeostasis2.89E-04
24GO:0006643: membrane lipid metabolic process2.89E-04
25GO:0032491: detection of molecule of fungal origin2.89E-04
26GO:0080120: CAAX-box protein maturation2.89E-04
27GO:0010120: camalexin biosynthetic process3.53E-04
28GO:0010204: defense response signaling pathway, resistance gene-independent3.53E-04
29GO:0000302: response to reactive oxygen species3.64E-04
30GO:0009816: defense response to bacterium, incompatible interaction6.29E-04
31GO:0019521: D-gluconate metabolic process6.34E-04
32GO:0002240: response to molecule of oomycetes origin6.34E-04
33GO:0051788: response to misfolded protein6.34E-04
34GO:0031349: positive regulation of defense response6.34E-04
35GO:0015914: phospholipid transport6.34E-04
36GO:0010155: regulation of proton transport6.34E-04
37GO:0006890: retrograde vesicle-mediated transport, Golgi to ER7.74E-04
38GO:0009737: response to abscisic acid8.85E-04
39GO:0009407: toxin catabolic process9.24E-04
40GO:0009735: response to cytokinin9.72E-04
41GO:0002237: response to molecule of bacterial origin9.86E-04
42GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway1.03E-03
43GO:0010359: regulation of anion channel activity1.03E-03
44GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway1.03E-03
45GO:0080055: low-affinity nitrate transport1.03E-03
46GO:0051176: positive regulation of sulfur metabolic process1.03E-03
47GO:0070588: calcium ion transmembrane transport1.10E-03
48GO:0010053: root epidermal cell differentiation1.10E-03
49GO:0034976: response to endoplasmic reticulum stress1.22E-03
50GO:0080147: root hair cell development1.35E-03
51GO:0006107: oxaloacetate metabolic process1.47E-03
52GO:0009647: skotomorphogenesis1.47E-03
53GO:0010116: positive regulation of abscisic acid biosynthetic process1.47E-03
54GO:0048194: Golgi vesicle budding1.47E-03
55GO:0060548: negative regulation of cell death1.97E-03
56GO:0006734: NADH metabolic process1.97E-03
57GO:0080142: regulation of salicylic acid biosynthetic process1.97E-03
58GO:0006508: proteolysis2.27E-03
59GO:0009697: salicylic acid biosynthetic process2.52E-03
60GO:0006564: L-serine biosynthetic process2.52E-03
61GO:0009626: plant-type hypersensitive response2.96E-03
62GO:0043248: proteasome assembly3.11E-03
63GO:1902456: regulation of stomatal opening3.11E-03
64GO:0006796: phosphate-containing compound metabolic process3.11E-03
65GO:0009117: nucleotide metabolic process3.11E-03
66GO:0009228: thiamine biosynthetic process3.11E-03
67GO:0002238: response to molecule of fungal origin3.11E-03
68GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly3.11E-03
69GO:0006561: proline biosynthetic process3.11E-03
70GO:2000067: regulation of root morphogenesis3.74E-03
71GO:0006694: steroid biosynthetic process3.74E-03
72GO:0010555: response to mannitol3.74E-03
73GO:0030163: protein catabolic process3.75E-03
74GO:0006468: protein phosphorylation4.39E-03
75GO:0046470: phosphatidylcholine metabolic process4.41E-03
76GO:0009395: phospholipid catabolic process4.41E-03
77GO:0048528: post-embryonic root development4.41E-03
78GO:0043090: amino acid import4.41E-03
79GO:1900056: negative regulation of leaf senescence4.41E-03
80GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway4.41E-03
81GO:1902074: response to salt4.41E-03
82GO:0050790: regulation of catalytic activity4.41E-03
83GO:0010044: response to aluminum ion4.41E-03
84GO:0009787: regulation of abscisic acid-activated signaling pathway5.12E-03
85GO:0009819: drought recovery5.12E-03
86GO:0031540: regulation of anthocyanin biosynthetic process5.12E-03
87GO:0009699: phenylpropanoid biosynthetic process5.87E-03
88GO:0006002: fructose 6-phosphate metabolic process5.87E-03
89GO:0022900: electron transport chain5.87E-03
90GO:0006075: (1->3)-beta-D-glucan biosynthetic process5.87E-03
91GO:0007186: G-protein coupled receptor signaling pathway5.87E-03
92GO:0032259: methylation6.14E-03
93GO:0046685: response to arsenic-containing substance6.65E-03
94GO:0006098: pentose-phosphate shunt6.65E-03
95GO:0010112: regulation of systemic acquired resistance6.65E-03
96GO:0006754: ATP biosynthetic process6.65E-03
97GO:0010150: leaf senescence6.93E-03
98GO:0010119: regulation of stomatal movement7.19E-03
99GO:0010205: photoinhibition7.48E-03
100GO:0043067: regulation of programmed cell death7.48E-03
101GO:0009651: response to salt stress7.54E-03
102GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process7.99E-03
103GO:0009870: defense response signaling pathway, resistance gene-dependent8.33E-03
104GO:0006032: chitin catabolic process8.33E-03
105GO:0043069: negative regulation of programmed cell death8.33E-03
106GO:0009682: induced systemic resistance9.22E-03
107GO:0052544: defense response by callose deposition in cell wall9.22E-03
108GO:0000272: polysaccharide catabolic process9.22E-03
109GO:0009750: response to fructose9.22E-03
110GO:0018119: peptidyl-cysteine S-nitrosylation9.22E-03
111GO:0048229: gametophyte development9.22E-03
112GO:0006631: fatty acid metabolic process9.37E-03
113GO:0006790: sulfur compound metabolic process1.01E-02
114GO:0015706: nitrate transport1.01E-02
115GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process1.11E-02
116GO:0006626: protein targeting to mitochondrion1.11E-02
117GO:0006108: malate metabolic process1.11E-02
118GO:0006807: nitrogen compound metabolic process1.11E-02
119GO:0009718: anthocyanin-containing compound biosynthetic process1.11E-02
120GO:0009636: response to toxic substance1.15E-02
121GO:0006541: glutamine metabolic process1.21E-02
122GO:0009846: pollen germination1.28E-02
123GO:0046854: phosphatidylinositol phosphorylation1.31E-02
124GO:0006979: response to oxidative stress1.50E-02
125GO:0000027: ribosomal large subunit assembly1.52E-02
126GO:2000377: regulation of reactive oxygen species metabolic process1.52E-02
127GO:0005992: trehalose biosynthetic process1.52E-02
128GO:0080167: response to karrikin1.59E-02
129GO:0006096: glycolytic process1.63E-02
130GO:0010200: response to chitin1.66E-02
131GO:0031408: oxylipin biosynthetic process1.75E-02
132GO:0016998: cell wall macromolecule catabolic process1.75E-02
133GO:0009814: defense response, incompatible interaction1.86E-02
134GO:0016226: iron-sulfur cluster assembly1.86E-02
135GO:0030433: ubiquitin-dependent ERAD pathway1.86E-02
136GO:0031348: negative regulation of defense response1.86E-02
137GO:0006012: galactose metabolic process1.98E-02
138GO:0010584: pollen exine formation2.10E-02
139GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.23E-02
140GO:0042147: retrograde transport, endosome to Golgi2.23E-02
141GO:0015031: protein transport2.23E-02
142GO:0006457: protein folding2.30E-02
143GO:0006952: defense response2.37E-02
144GO:0006511: ubiquitin-dependent protein catabolic process2.47E-02
145GO:0008360: regulation of cell shape2.48E-02
146GO:0010197: polar nucleus fusion2.48E-02
147GO:0009408: response to heat2.60E-02
148GO:0015986: ATP synthesis coupled proton transport2.61E-02
149GO:0048825: cotyledon development2.75E-02
150GO:0009749: response to glucose2.75E-02
151GO:0009851: auxin biosynthetic process2.75E-02
152GO:0006891: intra-Golgi vesicle-mediated transport2.88E-02
153GO:0010193: response to ozone2.88E-02
154GO:0032502: developmental process3.02E-02
155GO:0009630: gravitropism3.02E-02
156GO:0006464: cellular protein modification process3.31E-02
157GO:0006904: vesicle docking involved in exocytosis3.45E-02
158GO:0050832: defense response to fungus3.74E-02
159GO:0009607: response to biotic stimulus3.90E-02
160GO:0009627: systemic acquired resistance4.05E-02
161GO:0042128: nitrate assimilation4.05E-02
162GO:0016311: dephosphorylation4.37E-02
163GO:0009817: defense response to fungus, incompatible interaction4.53E-02
164GO:0008219: cell death4.53E-02
165GO:0009813: flavonoid biosynthetic process4.69E-02
166GO:0006499: N-terminal protein myristoylation4.85E-02
RankGO TermAdjusted P value
1GO:0050269: coniferyl-aldehyde dehydrogenase activity0.00E+00
2GO:0052642: lysophosphatidic acid phosphatase activity0.00E+00
3GO:0003837: beta-ureidopropionase activity0.00E+00
4GO:0047720: indoleacetaldoxime dehydratase activity0.00E+00
5GO:0016312: inositol bisphosphate phosphatase activity0.00E+00
6GO:0004157: dihydropyrimidinase activity0.00E+00
7GO:0004656: procollagen-proline 4-dioxygenase activity1.74E-04
8GO:0004364: glutathione transferase activity1.93E-04
9GO:0043295: glutathione binding2.27E-04
10GO:0004648: O-phospho-L-serine:2-oxoglutarate aminotransferase activity2.89E-04
11GO:0004425: indole-3-glycerol-phosphate synthase activity2.89E-04
12GO:0033984: indole-3-glycerol-phosphate lyase activity2.89E-04
13GO:0004591: oxoglutarate dehydrogenase (succinyl-transferring) activity2.89E-04
14GO:0080023: 3R-hydroxyacyl-CoA dehydratase activity2.89E-04
15GO:0008171: O-methyltransferase activity5.88E-04
16GO:0019172: glyoxalase III activity6.34E-04
17GO:0004775: succinate-CoA ligase (ADP-forming) activity6.34E-04
18GO:0004450: isocitrate dehydrogenase (NADP+) activity6.34E-04
19GO:0048531: beta-1,3-galactosyltransferase activity6.34E-04
20GO:0004385: guanylate kinase activity6.34E-04
21GO:0004776: succinate-CoA ligase (GDP-forming) activity6.34E-04
22GO:0005507: copper ion binding6.58E-04
23GO:0005516: calmodulin binding7.44E-04
24GO:0005388: calcium-transporting ATPase activity8.76E-04
25GO:0080054: low-affinity nitrate transmembrane transporter activity1.03E-03
26GO:0004324: ferredoxin-NADP+ reductase activity1.03E-03
27GO:0008430: selenium binding1.03E-03
28GO:0003854: 3-beta-hydroxy-delta5-steroid dehydrogenase activity1.03E-03
29GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity1.03E-03
30GO:0004148: dihydrolipoyl dehydrogenase activity1.03E-03
31GO:0031683: G-protein beta/gamma-subunit complex binding1.03E-03
32GO:0016805: dipeptidase activity1.03E-03
33GO:0004049: anthranilate synthase activity1.03E-03
34GO:0001664: G-protein coupled receptor binding1.03E-03
35GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors1.10E-03
36GO:0004190: aspartic-type endopeptidase activity1.10E-03
37GO:0004674: protein serine/threonine kinase activity1.17E-03
38GO:0008276: protein methyltransferase activity1.47E-03
39GO:0004449: isocitrate dehydrogenase (NAD+) activity1.47E-03
40GO:0016656: monodehydroascorbate reductase (NADH) activity1.47E-03
41GO:0005524: ATP binding1.91E-03
42GO:0004834: tryptophan synthase activity1.97E-03
43GO:0016301: kinase activity2.04E-03
44GO:0003756: protein disulfide isomerase activity2.12E-03
45GO:0045431: flavonol synthase activity2.52E-03
46GO:0005546: phosphatidylinositol-4,5-bisphosphate binding2.52E-03
47GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen2.52E-03
48GO:0004040: amidase activity2.52E-03
49GO:0005496: steroid binding2.52E-03
50GO:0031386: protein tag2.52E-03
51GO:0000287: magnesium ion binding2.54E-03
52GO:0030976: thiamine pyrophosphate binding3.11E-03
53GO:0004526: ribonuclease P activity3.11E-03
54GO:0004029: aldehyde dehydrogenase (NAD) activity3.11E-03
55GO:0036402: proteasome-activating ATPase activity3.11E-03
56GO:0016615: malate dehydrogenase activity3.11E-03
57GO:0004866: endopeptidase inhibitor activity3.11E-03
58GO:0050660: flavin adenine dinucleotide binding3.26E-03
59GO:0051920: peroxiredoxin activity3.74E-03
60GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.74E-03
61GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity3.74E-03
62GO:0102391: decanoate--CoA ligase activity3.74E-03
63GO:0004012: phospholipid-translocating ATPase activity3.74E-03
64GO:0004602: glutathione peroxidase activity3.74E-03
65GO:0030060: L-malate dehydrogenase activity3.74E-03
66GO:0004143: diacylglycerol kinase activity4.41E-03
67GO:0008235: metalloexopeptidase activity4.41E-03
68GO:0102425: myricetin 3-O-glucosyltransferase activity4.41E-03
69GO:0102360: daphnetin 3-O-glucosyltransferase activity4.41E-03
70GO:0008121: ubiquinol-cytochrome-c reductase activity4.41E-03
71GO:0003872: 6-phosphofructokinase activity4.41E-03
72GO:0004467: long-chain fatty acid-CoA ligase activity4.41E-03
73GO:0051213: dioxygenase activity4.76E-03
74GO:0016209: antioxidant activity5.12E-03
75GO:0004034: aldose 1-epimerase activity5.12E-03
76GO:0047893: flavonol 3-O-glucosyltransferase activity5.12E-03
77GO:0004683: calmodulin-dependent protein kinase activity5.61E-03
78GO:0003843: 1,3-beta-D-glucan synthase activity5.87E-03
79GO:0004630: phospholipase D activity5.87E-03
80GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity5.87E-03
81GO:0008757: S-adenosylmethionine-dependent methyltransferase activity5.91E-03
82GO:0050897: cobalt ion binding7.19E-03
83GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity7.48E-03
84GO:0004743: pyruvate kinase activity7.48E-03
85GO:0045309: protein phosphorylated amino acid binding7.48E-03
86GO:0030955: potassium ion binding7.48E-03
87GO:0008047: enzyme activator activity8.33E-03
88GO:0004713: protein tyrosine kinase activity8.33E-03
89GO:0004568: chitinase activity8.33E-03
90GO:0005543: phospholipid binding9.22E-03
91GO:0019904: protein domain specific binding9.22E-03
92GO:0004129: cytochrome-c oxidase activity9.22E-03
93GO:0008794: arsenate reductase (glutaredoxin) activity9.22E-03
94GO:0004177: aminopeptidase activity9.22E-03
95GO:0008559: xenobiotic-transporting ATPase activity9.22E-03
96GO:0005262: calcium channel activity1.11E-02
97GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.11E-02
98GO:0008168: methyltransferase activity1.15E-02
99GO:0015293: symporter activity1.15E-02
100GO:0031624: ubiquitin conjugating enzyme binding1.21E-02
101GO:0004175: endopeptidase activity1.21E-02
102GO:0051287: NAD binding1.23E-02
103GO:0005509: calcium ion binding1.29E-02
104GO:0017025: TBP-class protein binding1.31E-02
105GO:0008061: chitin binding1.31E-02
106GO:0003712: transcription cofactor activity1.31E-02
107GO:0031418: L-ascorbic acid binding1.52E-02
108GO:0003954: NADH dehydrogenase activity1.52E-02
109GO:0008233: peptidase activity1.55E-02
110GO:0061630: ubiquitin protein ligase activity1.69E-02
111GO:0035251: UDP-glucosyltransferase activity1.75E-02
112GO:0004298: threonine-type endopeptidase activity1.75E-02
113GO:0033612: receptor serine/threonine kinase binding1.75E-02
114GO:0015035: protein disulfide oxidoreductase activity2.02E-02
115GO:0016746: transferase activity, transferring acyl groups2.02E-02
116GO:0004499: N,N-dimethylaniline monooxygenase activity2.10E-02
117GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen2.20E-02
118GO:0016491: oxidoreductase activity2.36E-02
119GO:0046933: proton-transporting ATP synthase activity, rotational mechanism2.48E-02
120GO:0003924: GTPase activity2.60E-02
121GO:0016853: isomerase activity2.61E-02
122GO:0009055: electron carrier activity2.83E-02
123GO:0004197: cysteine-type endopeptidase activity3.02E-02
124GO:0020037: heme binding3.20E-02
125GO:0005525: GTP binding3.27E-02
126GO:0008237: metallopeptidase activity3.45E-02
127GO:0009931: calcium-dependent protein serine/threonine kinase activity4.05E-02
128GO:0030247: polysaccharide binding4.21E-02
129GO:0005506: iron ion binding4.31E-02
130GO:0008236: serine-type peptidase activity4.37E-02
131GO:0004222: metalloendopeptidase activity4.85E-02
RankGO TermAdjusted P value
1GO:0019822: P4 peroxisome0.00E+00
2GO:0000327: lytic vacuole within protein storage vacuole0.00E+00
3GO:0005886: plasma membrane1.52E-09
4GO:0005829: cytosol2.12E-08
5GO:0005782: peroxisomal matrix1.37E-05
6GO:0005773: vacuole1.58E-05
7GO:0005783: endoplasmic reticulum1.73E-05
8GO:0000502: proteasome complex3.38E-04
9GO:0031304: intrinsic component of mitochondrial inner membrane6.34E-04
10GO:0005901: caveola6.34E-04
11GO:0008541: proteasome regulatory particle, lid subcomplex6.77E-04
12GO:0030658: transport vesicle membrane1.47E-03
13GO:0070062: extracellular exosome1.47E-03
14GO:0005777: peroxisome1.52E-03
15GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)1.97E-03
16GO:0030660: Golgi-associated vesicle membrane1.97E-03
17GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane1.97E-03
18GO:0005746: mitochondrial respiratory chain2.52E-03
19GO:0005945: 6-phosphofructokinase complex2.52E-03
20GO:0005794: Golgi apparatus2.57E-03
21GO:0005747: mitochondrial respiratory chain complex I2.84E-03
22GO:0005774: vacuolar membrane3.09E-03
23GO:0048046: apoplast3.50E-03
24GO:0016272: prefoldin complex3.74E-03
25GO:0031597: cytosolic proteasome complex3.74E-03
26GO:0009506: plasmodesma4.35E-03
27GO:0031595: nuclear proteasome complex4.41E-03
28GO:0005788: endoplasmic reticulum lumen5.03E-03
29GO:0045273: respiratory chain complex II5.12E-03
30GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)5.12E-03
31GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane5.12E-03
32GO:0019773: proteasome core complex, alpha-subunit complex5.87E-03
33GO:0000148: 1,3-beta-D-glucan synthase complex5.87E-03
34GO:0000326: protein storage vacuole5.87E-03
35GO:0008540: proteasome regulatory particle, base subcomplex7.48E-03
36GO:0005765: lysosomal membrane9.22E-03
37GO:0005789: endoplasmic reticulum membrane1.07E-02
38GO:0005750: mitochondrial respiratory chain complex III1.21E-02
39GO:0005764: lysosome1.21E-02
40GO:0030176: integral component of endoplasmic reticulum membrane1.31E-02
41GO:0005753: mitochondrial proton-transporting ATP synthase complex1.31E-02
42GO:0009570: chloroplast stroma1.53E-02
43GO:0005737: cytoplasm1.58E-02
44GO:0005839: proteasome core complex1.75E-02
45GO:0016020: membrane1.79E-02
46GO:0009504: cell plate2.75E-02
47GO:0000145: exocyst3.02E-02
48GO:0032580: Golgi cisterna membrane3.31E-02
49GO:0016021: integral component of membrane3.50E-02
50GO:0000151: ubiquitin ligase complex4.53E-02
Gene type



Gene DE type