co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G07540

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090627: plant epidermal cell differentiation	0.00E+00
2	GO:0010205: photoinhibition	1.32E-05
3	GO:0010207: photosystem II assembly	3.12E-05
4	GO:0035304: regulation of protein dephosphorylation	6.44E-05
5	GO:0001736: establishment of planar polarity	6.44E-05
6	GO:0010024: phytochromobilin biosynthetic process	6.44E-05
7	GO:0009958: positive gravitropism	1.03E-04
8	GO:0015714: phosphoenolpyruvate transport	1.13E-04
9	GO:0006788: heme oxidation	1.13E-04
10	GO:0048825: cotyledon development	1.20E-04
11	GO:0071484: cellular response to light intensity	1.69E-04
12	GO:0080170: hydrogen peroxide transmembrane transport	1.69E-04
13	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.69E-04
14	GO:0015995: chlorophyll biosynthetic process	2.28E-04
15	GO:0030104: water homeostasis	2.30E-04
16	GO:0015713: phosphoglycerate transport	2.30E-04
17	GO:0030308: negative regulation of cell growth	2.95E-04
18	GO:0016120: carotene biosynthetic process	2.95E-04
19	GO:0009913: epidermal cell differentiation	3.65E-04
20	GO:0042549: photosystem II stabilization	3.65E-04
21	GO:1900057: positive regulation of leaf senescence	5.11E-04
22	GO:0010444: guard mother cell differentiation	5.11E-04
23	GO:0010078: maintenance of root meristem identity	5.89E-04
24	GO:0043562: cellular response to nitrogen levels	6.69E-04
25	GO:0010206: photosystem II repair	7.52E-04
26	GO:0048829: root cap development	9.24E-04
27	GO:0019684: photosynthesis, light reaction	1.01E-03
28	GO:0018119: peptidyl-cysteine S-nitrosylation	1.01E-03
29	GO:0048765: root hair cell differentiation	1.01E-03
30	GO:0009684: indoleacetic acid biosynthetic process	1.01E-03
31	GO:0009773: photosynthetic electron transport in photosystem I	1.01E-03
32	GO:0016024: CDP-diacylglycerol biosynthetic process	1.11E-03
33	GO:0009718: anthocyanin-containing compound biosynthetic process	1.20E-03
34	GO:0010588: cotyledon vascular tissue pattern formation	1.20E-03
35	GO:0009691: cytokinin biosynthetic process	1.20E-03
36	GO:0048467: gynoecium development	1.30E-03
37	GO:0010143: cutin biosynthetic process	1.30E-03
38	GO:0010030: positive regulation of seed germination	1.40E-03
39	GO:0006636: unsaturated fatty acid biosynthetic process	1.50E-03
40	GO:0031408: oxylipin biosynthetic process	1.83E-03
41	GO:0003333: amino acid transmembrane transport	1.83E-03
42	GO:0048511: rhythmic process	1.83E-03
43	GO:0042127: regulation of cell proliferation	2.18E-03
44	GO:0009723: response to ethylene	2.30E-03
45	GO:0016117: carotenoid biosynthetic process	2.30E-03
46	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.30E-03
47	GO:0009733: response to auxin	2.33E-03
48	GO:0080022: primary root development	2.42E-03
49	GO:0008033: tRNA processing	2.42E-03
50	GO:0034220: ion transmembrane transport	2.42E-03
51	GO:0010087: phloem or xylem histogenesis	2.42E-03
52	GO:0042631: cellular response to water deprivation	2.42E-03
53	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.54E-03
54	GO:0042752: regulation of circadian rhythm	2.68E-03
55	GO:0009851: auxin biosynthetic process	2.80E-03
56	GO:0015979: photosynthesis	2.80E-03
57	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.94E-03
58	GO:0016032: viral process	3.07E-03
59	GO:0048573: photoperiodism, flowering	4.21E-03
60	GO:0010311: lateral root formation	4.67E-03
61	GO:0048527: lateral root development	4.99E-03
62	GO:0009734: auxin-activated signaling pathway	5.06E-03
63	GO:0006865: amino acid transport	5.15E-03
64	GO:0009637: response to blue light	5.31E-03
65	GO:0009926: auxin polar transport	6.32E-03
66	GO:0045893: positive regulation of transcription, DNA-templated	7.31E-03
67	GO:0048367: shoot system development	8.93E-03
68	GO:0048316: seed development	8.93E-03
69	GO:0009624: response to nematode	9.95E-03
70	GO:0051726: regulation of cell cycle	1.04E-02
71	GO:0009845: seed germination	1.23E-02
72	GO:0042742: defense response to bacterium	1.29E-02
73	GO:0007166: cell surface receptor signaling pathway	1.61E-02
74	GO:0006810: transport	1.90E-02
75	GO:0007049: cell cycle	2.16E-02
76	GO:0006468: protein phosphorylation	2.68E-02
77	GO:0032259: methylation	2.98E-02
78	GO:0016042: lipid catabolic process	3.01E-02
79	GO:0009908: flower development	4.30E-02
80	GO:0009416: response to light stimulus	4.62E-02
81	GO:0051301: cell division	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
2	GO:0045436: lycopene beta cyclase activity	0.00E+00
3	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
4	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	2.53E-05
5	GO:0010242: oxygen evolving activity	2.53E-05
6	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	6.44E-05
7	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	6.44E-05
8	GO:0090729: toxin activity	1.13E-04
9	GO:0016765: transferase activity, transferring alkyl or aryl (other than methyl) groups	1.13E-04
10	GO:0004392: heme oxygenase (decyclizing) activity	2.30E-04
11	GO:0015120: phosphoglycerate transmembrane transporter activity	2.30E-04
12	GO:0010011: auxin binding	2.30E-04
13	GO:0010328: auxin influx transmembrane transporter activity	2.30E-04
14	GO:0052623: ADP dimethylallyltransferase activity	2.95E-04
15	GO:0052622: ATP dimethylallyltransferase activity	2.95E-04
16	GO:0016846: carbon-sulfur lyase activity	2.95E-04
17	GO:0009824: AMP dimethylallyltransferase activity	3.65E-04
18	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	3.65E-04
19	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	3.65E-04
20	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	6.69E-04
21	GO:0008266: poly(U) RNA binding	1.30E-03
22	GO:0016791: phosphatase activity	3.34E-03
23	GO:0015250: water channel activity	3.77E-03
24	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	4.83E-03
25	GO:0015293: symporter activity	6.85E-03
26	GO:0015171: amino acid transmembrane transporter activity	8.35E-03
27	GO:0016746: transferase activity, transferring acyl groups	1.02E-02
28	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.19E-02
29	GO:0005509: calcium ion binding	1.19E-02
30	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.39E-02
31	GO:0015297: antiporter activity	1.42E-02
32	GO:0005215: transporter activity	1.43E-02
33	GO:0042802: identical protein binding	1.73E-02
34	GO:0016788: hydrolase activity, acting on ester bonds	2.02E-02
35	GO:0052689: carboxylic ester hydrolase activity	2.50E-02
36	GO:0009055: electron carrier activity	3.23E-02
37	GO:0008289: lipid binding	3.88E-02

Rank	GO Term	Adjusted P value
1	GO:0030095: chloroplast photosystem II	2.25E-07
2	GO:0009579: thylakoid	3.46E-07
3	GO:0009543: chloroplast thylakoid lumen	1.76E-06
4	GO:0009534: chloroplast thylakoid	8.44E-06
5	GO:0031977: thylakoid lumen	1.33E-05
6	GO:0009535: chloroplast thylakoid membrane	1.72E-05
7	GO:0043674: columella	2.53E-05
8	GO:0009654: photosystem II oxygen evolving complex	5.21E-05
9	GO:0030093: chloroplast photosystem I	6.44E-05
10	GO:0019898: extrinsic component of membrane	1.20E-04
11	GO:0031969: chloroplast membrane	2.47E-04
12	GO:0042807: central vacuole	5.11E-04
13	GO:0009986: cell surface	5.11E-04
14	GO:0009507: chloroplast	7.12E-04
15	GO:0008180: COP9 signalosome	7.52E-04
16	GO:0009508: plastid chromosome	1.20E-03
17	GO:0031965: nuclear membrane	2.80E-03
18	GO:0009295: nucleoid	3.48E-03
19	GO:0019005: SCF ubiquitin ligase complex	4.52E-03
20	GO:0000502: proteasome complex	7.78E-03
21	GO:0009706: chloroplast inner membrane	9.95E-03
22	GO:0010287: plastoglobule	1.12E-02
23	GO:0009941: chloroplast envelope	1.43E-02
24	GO:0009705: plant-type vacuole membrane	1.46E-02
25	GO:0005886: plasma membrane	1.51E-02
26	GO:0009536: plastid	1.59E-02
27	GO:0005789: endoplasmic reticulum membrane	1.98E-02
28	GO:0016021: integral component of membrane	2.95E-02
29	GO:0005887: integral component of plasma membrane	3.82E-02