co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G07320

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0016553: base conversion or substitution editing	0.00E+00
2	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
3	GO:0042371: vitamin K biosynthetic process	0.00E+00
4	GO:1900000: regulation of anthocyanin catabolic process	0.00E+00
5	GO:0002184: cytoplasmic translational termination	0.00E+00
6	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
7	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
8	GO:0006412: translation	4.77E-07
9	GO:0009658: chloroplast organization	2.13E-05
10	GO:0032544: plastid translation	6.66E-05
11	GO:0010027: thylakoid membrane organization	6.89E-05
12	GO:0043489: RNA stabilization	9.50E-05
13	GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process	9.50E-05
14	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	9.50E-05
15	GO:0006434: seryl-tRNA aminoacylation	9.50E-05
16	GO:0060627: regulation of vesicle-mediated transport	9.50E-05
17	GO:0001736: establishment of planar polarity	2.24E-04
18	GO:0043039: tRNA aminoacylation	2.24E-04
19	GO:0009735: response to cytokinin	2.24E-04
20	GO:0042254: ribosome biogenesis	2.43E-04
21	GO:0090391: granum assembly	3.73E-04
22	GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement	3.73E-04
23	GO:0010239: chloroplast mRNA processing	5.37E-04
24	GO:0051016: barbed-end actin filament capping	5.37E-04
25	GO:0010088: phloem development	5.37E-04
26	GO:0000413: protein peptidyl-prolyl isomerization	5.52E-04
27	GO:0009956: radial pattern formation	7.14E-04
28	GO:0000919: cell plate assembly	7.14E-04
29	GO:0009790: embryo development	7.86E-04
30	GO:0006564: L-serine biosynthetic process	9.02E-04
31	GO:0010236: plastoquinone biosynthetic process	9.02E-04
32	GO:0007094: mitotic spindle assembly checkpoint	9.02E-04
33	GO:0048359: mucilage metabolic process involved in seed coat development	9.02E-04
34	GO:0042549: photosystem II stabilization	1.10E-03
35	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.10E-03
36	GO:0015995: chlorophyll biosynthetic process	1.21E-03
37	GO:0042372: phylloquinone biosynthetic process	1.31E-03
38	GO:0017148: negative regulation of translation	1.31E-03
39	GO:0006694: steroid biosynthetic process	1.31E-03
40	GO:1901259: chloroplast rRNA processing	1.31E-03
41	GO:0007568: aging	1.54E-03
42	GO:0009395: phospholipid catabolic process	1.54E-03
43	GO:0009772: photosynthetic electron transport in photosystem II	1.54E-03
44	GO:0051693: actin filament capping	1.54E-03
45	GO:0010196: nonphotochemical quenching	1.54E-03
46	GO:0071669: plant-type cell wall organization or biogenesis	1.54E-03
47	GO:0030091: protein repair	1.78E-03
48	GO:0009690: cytokinin metabolic process	1.78E-03
49	GO:0006353: DNA-templated transcription, termination	1.78E-03
50	GO:0009808: lignin metabolic process	2.03E-03
51	GO:0000902: cell morphogenesis	2.29E-03
52	GO:0015780: nucleotide-sugar transport	2.29E-03
53	GO:0008643: carbohydrate transport	2.33E-03
54	GO:0007346: regulation of mitotic cell cycle	2.56E-03
55	GO:0045454: cell redox homeostasis	2.73E-03
56	GO:0048829: root cap development	2.85E-03
57	GO:0006949: syncytium formation	2.85E-03
58	GO:0006869: lipid transport	3.07E-03
59	GO:0048765: root hair cell differentiation	3.14E-03
60	GO:0010015: root morphogenesis	3.14E-03
61	GO:0016042: lipid catabolic process	3.43E-03
62	GO:0016024: CDP-diacylglycerol biosynthetic process	3.44E-03
63	GO:0006006: glucose metabolic process	3.76E-03
64	GO:0030036: actin cytoskeleton organization	3.76E-03
65	GO:0010207: photosystem II assembly	4.08E-03
66	GO:0007015: actin filament organization	4.08E-03
67	GO:0010143: cutin biosynthetic process	4.08E-03
68	GO:0009933: meristem structural organization	4.08E-03
69	GO:0019253: reductive pentose-phosphate cycle	4.08E-03
70	GO:0042742: defense response to bacterium	4.21E-03
71	GO:0000027: ribosomal large subunit assembly	5.10E-03
72	GO:0003333: amino acid transmembrane transport	5.83E-03
73	GO:0007005: mitochondrion organization	6.20E-03
74	GO:0030245: cellulose catabolic process	6.20E-03
75	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	6.58E-03
76	GO:0009409: response to cold	6.66E-03
77	GO:0019722: calcium-mediated signaling	6.98E-03
78	GO:0000271: polysaccharide biosynthetic process	7.79E-03
79	GO:0042631: cellular response to water deprivation	7.79E-03
80	GO:0042335: cuticle development	7.79E-03
81	GO:0009958: positive gravitropism	8.21E-03
82	GO:0010305: leaf vascular tissue pattern formation	8.21E-03
83	GO:0016132: brassinosteroid biosynthetic process	9.51E-03
84	GO:0002229: defense response to oomycetes	9.51E-03
85	GO:0010583: response to cyclopentenone	9.96E-03
86	GO:0009826: unidimensional cell growth	1.05E-02
87	GO:0009828: plant-type cell wall loosening	1.09E-02
88	GO:0007267: cell-cell signaling	1.14E-02
89	GO:0055114: oxidation-reduction process	1.32E-02
90	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.40E-02
91	GO:0048481: plant ovule development	1.49E-02
92	GO:0030244: cellulose biosynthetic process	1.49E-02
93	GO:0009817: defense response to fungus, incompatible interaction	1.49E-02
94	GO:0009832: plant-type cell wall biogenesis	1.54E-02
95	GO:0010311: lateral root formation	1.54E-02
96	GO:0009834: plant-type secondary cell wall biogenesis	1.59E-02
97	GO:0009631: cold acclimation	1.65E-02
98	GO:0006865: amino acid transport	1.70E-02
99	GO:0045087: innate immune response	1.76E-02
100	GO:0006839: mitochondrial transport	1.93E-02
101	GO:0009926: auxin polar transport	2.10E-02
102	GO:0042546: cell wall biogenesis	2.16E-02
103	GO:0009664: plant-type cell wall organization	2.47E-02
104	GO:0042538: hyperosmotic salinity response	2.47E-02
105	GO:0009809: lignin biosynthetic process	2.60E-02
106	GO:0006364: rRNA processing	2.60E-02
107	GO:0006813: potassium ion transport	2.60E-02
108	GO:0006096: glycolytic process	2.93E-02
109	GO:0048367: shoot system development	3.00E-02
110	GO:0048316: seed development	3.00E-02
111	GO:0009740: gibberellic acid mediated signaling pathway	3.20E-02
112	GO:0009624: response to nematode	3.34E-02
113	GO:0006396: RNA processing	3.42E-02
114	GO:0051726: regulation of cell cycle	3.49E-02
115	GO:0009416: response to light stimulus	3.56E-02
116	GO:0051301: cell division	3.88E-02
117	GO:0009058: biosynthetic process	4.07E-02
118	GO:0006457: protein folding	4.59E-02
119	GO:0006633: fatty acid biosynthetic process	4.61E-02
120	GO:0045490: pectin catabolic process	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0047661: amino-acid racemase activity	0.00E+00
2	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
3	GO:0050614: delta24-sterol reductase activity	0.00E+00
4	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
5	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
6	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
7	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
8	GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity	0.00E+00
9	GO:0019843: rRNA binding	3.13E-09
10	GO:0003735: structural constituent of ribosome	3.90E-07
11	GO:0043023: ribosomal large subunit binding	4.33E-06
12	GO:0016788: hydrolase activity, acting on ester bonds	2.23E-05
13	GO:0051920: peroxiredoxin activity	2.96E-05
14	GO:0016209: antioxidant activity	5.25E-05
15	GO:0080062: cytokinin 9-beta-glucosyltransferase activity	9.50E-05
16	GO:0047807: cytokinin 7-beta-glucosyltransferase activity	9.50E-05
17	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	9.50E-05
18	GO:0004828: serine-tRNA ligase activity	9.50E-05
19	GO:0008266: poly(U) RNA binding	2.13E-04
20	GO:0004617: phosphoglycerate dehydrogenase activity	2.24E-04
21	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	2.24E-04
22	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	2.24E-04
23	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	3.73E-04
24	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	3.73E-04
25	GO:0016851: magnesium chelatase activity	5.37E-04
26	GO:0046527: glucosyltransferase activity	7.14E-04
27	GO:0004659: prenyltransferase activity	7.14E-04
28	GO:0010011: auxin binding	7.14E-04
29	GO:0010328: auxin influx transmembrane transporter activity	7.14E-04
30	GO:0004040: amidase activity	9.02E-04
31	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	1.10E-03
32	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.10E-03
33	GO:0051753: mannan synthase activity	1.31E-03
34	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	1.31E-03
35	GO:0052747: sinapyl alcohol dehydrogenase activity	1.78E-03
36	GO:0043621: protein self-association	2.33E-03
37	GO:0052689: carboxylic ester hydrolase activity	2.47E-03
38	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.51E-03
39	GO:0051287: NAD binding	2.60E-03
40	GO:0045551: cinnamyl-alcohol dehydrogenase activity	3.44E-03
41	GO:0004565: beta-galactosidase activity	3.76E-03
42	GO:0008289: lipid binding	5.41E-03
43	GO:0008324: cation transmembrane transporter activity	5.46E-03
44	GO:0030570: pectate lyase activity	6.58E-03
45	GO:0008810: cellulase activity	6.58E-03
46	GO:0016760: cellulose synthase (UDP-forming) activity	6.58E-03
47	GO:0008514: organic anion transmembrane transporter activity	6.98E-03
48	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	8.21E-03
49	GO:0008080: N-acetyltransferase activity	8.21E-03
50	GO:0051015: actin filament binding	1.04E-02
51	GO:0016791: phosphatase activity	1.09E-02
52	GO:0004601: peroxidase activity	1.09E-02
53	GO:0016722: oxidoreductase activity, oxidizing metal ions	1.14E-02
54	GO:0016597: amino acid binding	1.18E-02
55	GO:0030145: manganese ion binding	1.65E-02
56	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.65E-02
57	GO:0003993: acid phosphatase activity	1.81E-02
58	GO:0050661: NADP binding	1.93E-02
59	GO:0003924: GTPase activity	2.01E-02
60	GO:0015293: symporter activity	2.29E-02
61	GO:0015171: amino acid transmembrane transporter activity	2.80E-02
62	GO:0045735: nutrient reservoir activity	2.93E-02
63	GO:0080043: quercetin 3-O-glucosyltransferase activity	3.14E-02
64	GO:0080044: quercetin 7-O-glucosyltransferase activity	3.14E-02
65	GO:0030599: pectinesterase activity	3.20E-02
66	GO:0016746: transferase activity, transferring acyl groups	3.42E-02
67	GO:0016829: lyase activity	4.15E-02
68	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.68E-02

Rank	GO Term	Adjusted P value
1	GO:0009570: chloroplast stroma	6.81E-16
2	GO:0009941: chloroplast envelope	2.91E-09
3	GO:0009507: chloroplast	3.19E-09
4	GO:0009579: thylakoid	3.88E-07
5	GO:0005840: ribosome	3.36E-06
6	GO:0048046: apoplast	5.56E-06
7	GO:0009515: granal stacked thylakoid	9.50E-05
8	GO:0009547: plastid ribosome	9.50E-05
9	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	9.50E-05
10	GO:0000311: plastid large ribosomal subunit	1.63E-04
11	GO:0046658: anchored component of plasma membrane	1.81E-04
12	GO:0008290: F-actin capping protein complex	2.24E-04
13	GO:0010007: magnesium chelatase complex	3.73E-04
14	GO:0031225: anchored component of membrane	6.00E-04
15	GO:0005828: kinetochore microtubule	7.14E-04
16	GO:0000776: kinetochore	9.02E-04
17	GO:0010319: stromule	9.27E-04
18	GO:0009535: chloroplast thylakoid membrane	1.01E-03
19	GO:0000793: condensed chromosome	1.10E-03
20	GO:0000777: condensed chromosome kinetochore	1.31E-03
21	GO:0010369: chromocenter	1.31E-03
22	GO:0009536: plastid	1.34E-03
23	GO:0009505: plant-type cell wall	1.40E-03
24	GO:0009986: cell surface	1.54E-03
25	GO:0000794: condensed nuclear chromosome	1.54E-03
26	GO:0009534: chloroplast thylakoid	1.92E-03
27	GO:0031977: thylakoid lumen	1.99E-03
28	GO:0005876: spindle microtubule	2.56E-03
29	GO:0005884: actin filament	3.14E-03
30	GO:0005576: extracellular region	3.18E-03
31	GO:0016020: membrane	4.75E-03
32	GO:0009543: chloroplast thylakoid lumen	5.12E-03
33	GO:0022626: cytosolic ribosome	6.96E-03
34	GO:0005886: plasma membrane	9.79E-03
35	GO:0005618: cell wall	1.05E-02
36	GO:0030529: intracellular ribonucleoprotein complex	1.23E-02
37	GO:0031969: chloroplast membrane	1.36E-02
38	GO:0022625: cytosolic large ribosomal subunit	1.43E-02
39	GO:0005635: nuclear envelope	2.73E-02
40	GO:0009706: chloroplast inner membrane	3.34E-02