co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G07110

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009967: positive regulation of signal transduction	0.00E+00
2	GO:0071731: response to nitric oxide	0.00E+00
3	GO:0006412: translation	2.96E-95
4	GO:0042254: ribosome biogenesis	1.14E-34
5	GO:0000027: ribosomal large subunit assembly	1.34E-13
6	GO:0009955: adaxial/abaxial pattern specification	3.45E-07
7	GO:0006364: rRNA processing	1.80E-06
8	GO:0002181: cytoplasmic translation	2.91E-06
9	GO:0009735: response to cytokinin	7.23E-06
10	GO:0044205: 'de novo' UMP biosynthetic process	1.29E-05
11	GO:0042274: ribosomal small subunit biogenesis	1.29E-05
12	GO:0071215: cellular response to abscisic acid stimulus	2.89E-05
13	GO:0000028: ribosomal small subunit assembly	7.88E-05
14	GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.23E-04
15	GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.23E-04
16	GO:0006900: membrane budding	1.23E-04
17	GO:1990258: histone glutamine methylation	1.23E-04
18	GO:0006407: rRNA export from nucleus	1.23E-04
19	GO:1990542: mitochondrial transmembrane transport	1.23E-04
20	GO:0000494: box C/D snoRNA 3'-end processing	1.23E-04
21	GO:0055129: L-proline biosynthetic process	2.86E-04
22	GO:0009220: pyrimidine ribonucleotide biosynthetic process	2.86E-04
23	GO:0048569: post-embryonic animal organ development	2.86E-04
24	GO:0009965: leaf morphogenesis	3.88E-04
25	GO:1902626: assembly of large subunit precursor of preribosome	4.72E-04
26	GO:0010476: gibberellin mediated signaling pathway	4.72E-04
27	GO:0042256: mature ribosome assembly	4.72E-04
28	GO:0090506: axillary shoot meristem initiation	4.72E-04
29	GO:0040007: growth	6.14E-04
30	GO:0006520: cellular amino acid metabolic process	8.35E-04
31	GO:2000032: regulation of secondary shoot formation	8.97E-04
32	GO:0006414: translational elongation	1.04E-03
33	GO:0009845: seed germination	1.11E-03
34	GO:0071493: cellular response to UV-B	1.13E-03
35	GO:0031167: rRNA methylation	1.13E-03
36	GO:0009651: response to salt stress	1.38E-03
37	GO:0006561: proline biosynthetic process	1.39E-03
38	GO:0000470: maturation of LSU-rRNA	1.39E-03
39	GO:0000911: cytokinesis by cell plate formation	1.66E-03
40	GO:0009088: threonine biosynthetic process	1.66E-03
41	GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process	1.95E-03
42	GO:0010043: response to zinc ion	2.17E-03
43	GO:0009793: embryo development ending in seed dormancy	2.20E-03
44	GO:0001510: RNA methylation	2.58E-03
45	GO:0009097: isoleucine biosynthetic process	2.58E-03
46	GO:0006526: arginine biosynthetic process	2.58E-03
47	GO:0008283: cell proliferation	3.06E-03
48	GO:0009086: methionine biosynthetic process	3.26E-03
49	GO:0046686: response to cadmium ion	3.85E-03
50	GO:0006913: nucleocytoplasmic transport	4.00E-03
51	GO:0009089: lysine biosynthetic process via diaminopimelate	4.00E-03
52	GO:0010015: root morphogenesis	4.00E-03
53	GO:0006820: anion transport	4.39E-03
54	GO:0006417: regulation of translation	4.54E-03
55	GO:0010102: lateral root morphogenesis	4.79E-03
56	GO:0006626: protein targeting to mitochondrion	4.79E-03
57	GO:0010229: inflorescence development	4.79E-03
58	GO:0048367: shoot system development	5.00E-03
59	GO:0048467: gynoecium development	5.20E-03
60	GO:0030150: protein import into mitochondrial matrix	6.51E-03
61	GO:0007005: mitochondrion organization	7.93E-03
62	GO:0016036: cellular response to phosphate starvation	9.39E-03
63	GO:0051028: mRNA transport	9.45E-03
64	GO:0008033: tRNA processing	9.99E-03
65	GO:0010501: RNA secondary structure unwinding	9.99E-03
66	GO:0000413: protein peptidyl-prolyl isomerization	9.99E-03
67	GO:0009409: response to cold	1.15E-02
68	GO:0009791: post-embryonic development	1.16E-02
69	GO:0009749: response to glucose	1.16E-02
70	GO:0032502: developmental process	1.28E-02
71	GO:0010090: trichome morphogenesis	1.34E-02
72	GO:0010252: auxin homeostasis	1.40E-02
73	GO:0016049: cell growth	1.85E-02
74	GO:0006811: ion transport	2.05E-02
75	GO:0048527: lateral root development	2.12E-02
76	GO:0009853: photorespiration	2.26E-02
77	GO:0009644: response to high light intensity	2.87E-02
78	GO:0000154: rRNA modification	2.95E-02
79	GO:0048364: root development	2.99E-02
80	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	3.11E-02
81	GO:0009620: response to fungus	4.04E-02
82	GO:0000398: mRNA splicing, via spliceosome	4.77E-02

Rank	GO Term	Adjusted P value
1	GO:0004735: pyrroline-5-carboxylate reductase activity	0.00E+00
2	GO:0004073: aspartate-semialdehyde dehydrogenase activity	0.00E+00
3	GO:0005078: MAP-kinase scaffold activity	0.00E+00
4	GO:0004070: aspartate carbamoyltransferase activity	0.00E+00
5	GO:0016018: cyclosporin A binding	0.00E+00
6	GO:0003735: structural constituent of ribosome	1.30E-114
7	GO:0003729: mRNA binding	5.92E-31
8	GO:0019843: rRNA binding	3.28E-10
9	GO:0008097: 5S rRNA binding	6.84E-06
10	GO:0030515: snoRNA binding	6.07E-05
11	GO:0004088: carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity	1.23E-04
12	GO:1990259: histone-glutamine methyltransferase activity	1.23E-04
13	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	1.23E-04
14	GO:0016743: carboxyl- or carbamoyltransferase activity	2.86E-04
15	GO:0003723: RNA binding	3.42E-04
16	GO:0032947: protein complex scaffold	4.72E-04
17	GO:0070181: small ribosomal subunit rRNA binding	4.72E-04
18	GO:0008649: rRNA methyltransferase activity	4.72E-04
19	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	4.72E-04
20	GO:0070180: large ribosomal subunit rRNA binding	4.72E-04
21	GO:0000166: nucleotide binding	5.16E-04
22	GO:0017077: oxidative phosphorylation uncoupler activity	6.76E-04
23	GO:0015288: porin activity	2.26E-03
24	GO:0003746: translation elongation factor activity	2.38E-03
25	GO:0008308: voltage-gated anion channel activity	2.58E-03
26	GO:0004871: signal transducer activity	4.55E-03
27	GO:0015266: protein channel activity	4.79E-03
28	GO:0016597: amino acid binding	1.52E-02
29	GO:0004004: ATP-dependent RNA helicase activity	1.78E-02
30	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.91E-02
31	GO:0050661: NADP binding	2.48E-02
32	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.03E-02
33	GO:0051287: NAD binding	3.11E-02
34	GO:0008026: ATP-dependent helicase activity	4.49E-02

Rank	GO Term	Adjusted P value
1	GO:0022626: cytosolic ribosome	1.75E-97
2	GO:0022625: cytosolic large ribosomal subunit	1.36E-76
3	GO:0005840: ribosome	4.28E-62
4	GO:0005730: nucleolus	3.17E-50
5	GO:0022627: cytosolic small ribosomal subunit	1.27E-37
6	GO:0005829: cytosol	3.53E-34
7	GO:0005737: cytoplasm	1.56E-25
8	GO:0009506: plasmodesma	3.19E-23
9	GO:0015934: large ribosomal subunit	1.63E-22
10	GO:0016020: membrane	1.32E-18
11	GO:0005773: vacuole	7.18E-12
12	GO:0005618: cell wall	8.43E-12
13	GO:0005774: vacuolar membrane	3.71E-11
14	GO:0015935: small ribosomal subunit	3.87E-07
15	GO:0009507: chloroplast	5.31E-07
16	GO:0031428: box C/D snoRNP complex	3.20E-05
17	GO:0005951: carbamoyl-phosphate synthase complex	1.23E-04
18	GO:0030686: 90S preribosome	1.23E-04
19	GO:0015030: Cajal body	1.48E-04
20	GO:0032040: small-subunit processome	2.37E-04
21	GO:0005886: plasma membrane	3.00E-04
22	GO:0005853: eukaryotic translation elongation factor 1 complex	4.72E-04
23	GO:0005834: heterotrimeric G-protein complex	6.55E-04
24	GO:0005682: U5 snRNP	8.97E-04
25	GO:0005687: U4 snRNP	1.13E-03
26	GO:0071004: U2-type prespliceosome	2.26E-03
27	GO:0046540: U4/U6 x U5 tri-snRNP complex	2.58E-03
28	GO:0005742: mitochondrial outer membrane translocase complex	2.58E-03
29	GO:0046930: pore complex	2.58E-03
30	GO:0005685: U1 snRNP	2.91E-03
31	GO:0005686: U2 snRNP	3.62E-03
32	GO:0071013: catalytic step 2 spliceosome	4.00E-03
33	GO:0005635: nuclear envelope	4.39E-03
34	GO:0019013: viral nucleocapsid	4.79E-03
35	GO:0005741: mitochondrial outer membrane	7.45E-03
36	GO:0005643: nuclear pore	1.91E-02
37	GO:0005622: intracellular	2.40E-02
38	GO:0005743: mitochondrial inner membrane	2.67E-02
39	GO:0005747: mitochondrial respiratory chain complex I	3.86E-02
40	GO:0005732: small nucleolar ribonucleoprotein complex	4.58E-02
41	GO:0005654: nucleoplasm	4.95E-02