co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G07010

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
2	GO:0016553: base conversion or substitution editing	0.00E+00
3	GO:0042493: response to drug	0.00E+00
4	GO:0042371: vitamin K biosynthetic process	0.00E+00
5	GO:0032544: plastid translation	4.91E-06
6	GO:0090391: granum assembly	7.85E-06
7	GO:0015979: photosynthesis	7.96E-06
8	GO:0009773: photosynthetic electron transport in photosystem I	1.60E-05
9	GO:0010027: thylakoid membrane organization	2.21E-05
10	GO:0042254: ribosome biogenesis	3.17E-05
11	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	9.34E-05
12	GO:0006412: translation	1.08E-04
13	GO:0010196: nonphotochemical quenching	1.42E-04
14	GO:0009772: photosynthetic electron transport in photosystem II	1.42E-04
15	GO:0009733: response to auxin	1.74E-04
16	GO:0046620: regulation of organ growth	1.82E-04
17	GO:0043489: RNA stabilization	2.13E-04
18	GO:0071588: hydrogen peroxide mediated signaling pathway	2.13E-04
19	GO:0009828: plant-type cell wall loosening	2.63E-04
20	GO:0010206: photosystem II repair	2.74E-04
21	GO:0009734: auxin-activated signaling pathway	2.95E-04
22	GO:0009735: response to cytokinin	3.98E-04
23	GO:0015995: chlorophyll biosynthetic process	4.13E-04
24	GO:0006898: receptor-mediated endocytosis	4.76E-04
25	GO:0043255: regulation of carbohydrate biosynthetic process	4.76E-04
26	GO:0010541: acropetal auxin transport	4.76E-04
27	GO:0001736: establishment of planar polarity	4.76E-04
28	GO:0010024: phytochromobilin biosynthetic process	4.76E-04
29	GO:0016024: CDP-diacylglycerol biosynthetic process	5.07E-04
30	GO:0010207: photosystem II assembly	6.47E-04
31	GO:0006788: heme oxidation	7.74E-04
32	GO:0010160: formation of animal organ boundary	7.74E-04
33	GO:0015840: urea transport	7.74E-04
34	GO:0016045: detection of bacterium	7.74E-04
35	GO:0010359: regulation of anion channel activity	7.74E-04
36	GO:0080055: low-affinity nitrate transport	7.74E-04
37	GO:0006833: water transport	8.05E-04
38	GO:0009926: auxin polar transport	8.74E-04
39	GO:0051017: actin filament bundle assembly	8.90E-04
40	GO:0080170: hydrogen peroxide transmembrane transport	1.10E-03
41	GO:0043481: anthocyanin accumulation in tissues in response to UV light	1.10E-03
42	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.10E-03
43	GO:0009650: UV protection	1.10E-03
44	GO:1901332: negative regulation of lateral root development	1.10E-03
45	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.10E-03
46	GO:0051513: regulation of monopolar cell growth	1.10E-03
47	GO:0051639: actin filament network formation	1.10E-03
48	GO:0009664: plant-type cell wall organization	1.16E-03
49	GO:0030104: water homeostasis	1.47E-03
50	GO:0051764: actin crosslink formation	1.47E-03
51	GO:0042335: cuticle development	1.61E-03
52	GO:0034220: ion transmembrane transport	1.61E-03
53	GO:0000413: protein peptidyl-prolyl isomerization	1.61E-03
54	GO:0009958: positive gravitropism	1.73E-03
55	GO:0010236: plastoquinone biosynthetic process	1.87E-03
56	GO:0006655: phosphatidylglycerol biosynthetic process	2.31E-03
57	GO:0060918: auxin transport	2.31E-03
58	GO:0010337: regulation of salicylic acid metabolic process	2.31E-03
59	GO:0006751: glutathione catabolic process	2.31E-03
60	GO:0042549: photosystem II stabilization	2.31E-03
61	GO:0042372: phylloquinone biosynthetic process	2.77E-03
62	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	2.77E-03
63	GO:0010019: chloroplast-nucleus signaling pathway	2.77E-03
64	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	2.77E-03
65	GO:0006869: lipid transport	2.80E-03
66	GO:0016042: lipid catabolic process	3.20E-03
67	GO:1900056: negative regulation of leaf senescence	3.26E-03
68	GO:1900057: positive regulation of leaf senescence	3.26E-03
69	GO:0009627: systemic acquired resistance	3.43E-03
70	GO:0006605: protein targeting	3.78E-03
71	GO:0045490: pectin catabolic process	3.95E-03
72	GO:0010311: lateral root formation	4.20E-03
73	GO:0009631: cold acclimation	4.62E-03
74	GO:0009245: lipid A biosynthetic process	4.90E-03
75	GO:0010205: photoinhibition	5.50E-03
76	GO:0009638: phototropism	5.50E-03
77	GO:0030001: metal ion transport	5.77E-03
78	GO:0006032: chitin catabolic process	6.12E-03
79	GO:0048829: root cap development	6.12E-03
80	GO:0006949: syncytium formation	6.12E-03
81	GO:0009826: unidimensional cell growth	6.55E-03
82	GO:0052544: defense response by callose deposition in cell wall	6.77E-03
83	GO:0048765: root hair cell differentiation	6.77E-03
84	GO:0010015: root morphogenesis	6.77E-03
85	GO:0009658: chloroplast organization	6.87E-03
86	GO:0008361: regulation of cell size	7.44E-03
87	GO:2000012: regulation of auxin polar transport	8.13E-03
88	GO:0010102: lateral root morphogenesis	8.13E-03
89	GO:0009785: blue light signaling pathway	8.13E-03
90	GO:0010628: positive regulation of gene expression	8.13E-03
91	GO:0006006: glucose metabolic process	8.13E-03
92	GO:0009725: response to hormone	8.13E-03
93	GO:0010143: cutin biosynthetic process	8.84E-03
94	GO:0019253: reductive pentose-phosphate cycle	8.84E-03
95	GO:0010540: basipetal auxin transport	8.84E-03
96	GO:0080167: response to karrikin	9.04E-03
97	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	9.44E-03
98	GO:0009825: multidimensional cell growth	9.58E-03
99	GO:0010167: response to nitrate	9.58E-03
100	GO:0010030: positive regulation of seed germination	9.58E-03
101	GO:0010053: root epidermal cell differentiation	9.58E-03
102	GO:0006636: unsaturated fatty acid biosynthetic process	1.03E-02
103	GO:0019762: glucosinolate catabolic process	1.03E-02
104	GO:0000027: ribosomal large subunit assembly	1.11E-02
105	GO:0007017: microtubule-based process	1.19E-02
106	GO:0009624: response to nematode	1.26E-02
107	GO:0003333: amino acid transmembrane transport	1.27E-02
108	GO:0016998: cell wall macromolecule catabolic process	1.27E-02
109	GO:0048511: rhythmic process	1.27E-02
110	GO:0009411: response to UV	1.45E-02
111	GO:0048443: stamen development	1.53E-02
112	GO:0006284: base-excision repair	1.53E-02
113	GO:0009306: protein secretion	1.53E-02
114	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.62E-02
115	GO:0042631: cellular response to water deprivation	1.72E-02
116	GO:0080022: primary root development	1.72E-02
117	GO:0015986: ATP synthesis coupled proton transport	1.91E-02
118	GO:0042752: regulation of circadian rhythm	1.91E-02
119	GO:0006633: fatty acid biosynthetic process	1.98E-02
120	GO:0040008: regulation of growth	2.08E-02
121	GO:0000302: response to reactive oxygen species	2.10E-02
122	GO:0016032: viral process	2.20E-02
123	GO:0009630: gravitropism	2.20E-02
124	GO:0030163: protein catabolic process	2.31E-02
125	GO:0042742: defense response to bacterium	2.31E-02
126	GO:0009639: response to red or far red light	2.41E-02
127	GO:0009739: response to gibberellin	2.44E-02
128	GO:0009416: response to light stimulus	3.05E-02
129	GO:0030244: cellulose biosynthetic process	3.30E-02
130	GO:0010218: response to far red light	3.54E-02
131	GO:0009409: response to cold	3.60E-02
132	GO:0048527: lateral root development	3.66E-02
133	GO:0006865: amino acid transport	3.78E-02
134	GO:0045087: innate immune response	3.91E-02
135	GO:0009637: response to blue light	3.91E-02
136	GO:0034599: cellular response to oxidative stress	4.03E-02
137	GO:0006810: transport	4.04E-02
138	GO:0055085: transmembrane transport	4.10E-02
139	GO:0005975: carbohydrate metabolic process	4.24E-02
140	GO:0009640: photomorphogenesis	4.68E-02
141	GO:0010114: response to red light	4.68E-02
142	GO:0045454: cell redox homeostasis	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
2	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
3	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
4	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
5	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.29E-08
6	GO:0005528: FK506 binding	2.09E-08
7	GO:0019843: rRNA binding	1.80E-07
8	GO:0003735: structural constituent of ribosome	1.35E-06
9	GO:0016851: magnesium chelatase activity	1.79E-05
10	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	7.77E-05
11	GO:0045485: omega-6 fatty acid desaturase activity	2.13E-04
12	GO:0015200: methylammonium transmembrane transporter activity	2.13E-04
13	GO:0016788: hydrolase activity, acting on ester bonds	2.50E-04
14	GO:0015250: water channel activity	3.33E-04
15	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	4.76E-04
16	GO:0003839: gamma-glutamylcyclotransferase activity	4.76E-04
17	GO:0090729: toxin activity	7.74E-04
18	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	7.74E-04
19	GO:0080054: low-affinity nitrate transmembrane transporter activity	7.74E-04
20	GO:0001872: (1->3)-beta-D-glucan binding	1.10E-03
21	GO:0030570: pectate lyase activity	1.27E-03
22	GO:0010328: auxin influx transmembrane transporter activity	1.47E-03
23	GO:0004392: heme oxygenase (decyclizing) activity	1.47E-03
24	GO:0015204: urea transmembrane transporter activity	1.47E-03
25	GO:0004659: prenyltransferase activity	1.47E-03
26	GO:0010011: auxin binding	1.47E-03
27	GO:0008725: DNA-3-methyladenine glycosylase activity	1.87E-03
28	GO:0052689: carboxylic ester hydrolase activity	2.15E-03
29	GO:0004130: cytochrome-c peroxidase activity	2.31E-03
30	GO:0031177: phosphopantetheine binding	2.31E-03
31	GO:0016688: L-ascorbate peroxidase activity	2.31E-03
32	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	2.31E-03
33	GO:0008519: ammonium transmembrane transporter activity	2.31E-03
34	GO:0051015: actin filament binding	2.43E-03
35	GO:0016791: phosphatase activity	2.58E-03
36	GO:0016832: aldehyde-lyase activity	2.77E-03
37	GO:0000035: acyl binding	2.77E-03
38	GO:0016829: lyase activity	2.90E-03
39	GO:0030247: polysaccharide binding	3.61E-03
40	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	3.78E-03
41	GO:0008289: lipid binding	5.52E-03
42	GO:0004568: chitinase activity	6.12E-03
43	GO:0008794: arsenate reductase (glutaredoxin) activity	6.77E-03
44	GO:0008378: galactosyltransferase activity	7.44E-03
45	GO:0010329: auxin efflux transmembrane transporter activity	8.13E-03
46	GO:0031072: heat shock protein binding	8.13E-03
47	GO:0008266: poly(U) RNA binding	8.84E-03
48	GO:0004650: polygalacturonase activity	1.15E-02
49	GO:0003756: protein disulfide isomerase activity	1.53E-02
50	GO:0004252: serine-type endopeptidase activity	1.75E-02
51	GO:0008080: N-acetyltransferase activity	1.81E-02
52	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.81E-02
53	GO:0019901: protein kinase binding	2.00E-02
54	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.03E-02
55	GO:0004518: nuclease activity	2.20E-02
56	GO:0005200: structural constituent of cytoskeleton	2.52E-02
57	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	2.77E-02
58	GO:0102483: scopolin beta-glucosidase activity	3.07E-02
59	GO:0008236: serine-type peptidase activity	3.18E-02
60	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.30E-02
61	GO:0016491: oxidoreductase activity	3.45E-02
62	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	3.54E-02
63	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.66E-02
64	GO:0003993: acid phosphatase activity	4.03E-02
65	GO:0008422: beta-glucosidase activity	4.16E-02
66	GO:0050661: NADP binding	4.29E-02
67	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.30E-02
68	GO:0046872: metal ion binding	4.59E-02
69	GO:0051537: 2 iron, 2 sulfur cluster binding	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0044391: ribosomal subunit	0.00E+00
2	GO:0009515: granal stacked thylakoid	0.00E+00
3	GO:0009579: thylakoid	2.91E-18
4	GO:0009507: chloroplast	1.68E-16
5	GO:0009941: chloroplast envelope	2.25E-16
6	GO:0009570: chloroplast stroma	8.71E-16
7	GO:0009535: chloroplast thylakoid membrane	2.52E-15
8	GO:0009543: chloroplast thylakoid lumen	6.52E-15
9	GO:0009534: chloroplast thylakoid	2.92E-14
10	GO:0031977: thylakoid lumen	5.34E-09
11	GO:0005840: ribosome	4.54E-08
12	GO:0010007: magnesium chelatase complex	7.85E-06
13	GO:0042807: central vacuole	1.42E-04
14	GO:0005618: cell wall	1.42E-04
15	GO:0016020: membrane	1.52E-04
16	GO:0043674: columella	2.13E-04
17	GO:0008180: COP9 signalosome	2.74E-04
18	GO:0030093: chloroplast photosystem I	4.76E-04
19	GO:0005576: extracellular region	9.24E-04
20	GO:0009654: photosystem II oxygen evolving complex	9.78E-04
21	GO:0032432: actin filament bundle	1.10E-03
22	GO:0015630: microtubule cytoskeleton	1.10E-03
23	GO:0019898: extrinsic component of membrane	1.99E-03
24	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	2.31E-03
25	GO:0009295: nucleoid	2.74E-03
26	GO:0005886: plasma membrane	2.87E-03
27	GO:0009505: plant-type cell wall	3.03E-03
28	GO:0048046: apoplast	3.17E-03
29	GO:0009533: chloroplast stromal thylakoid	3.26E-03
30	GO:0009986: cell surface	3.26E-03
31	GO:0019005: SCF ubiquitin ligase complex	4.00E-03
32	GO:0000326: protein storage vacuole	4.33E-03
33	GO:0005884: actin filament	6.77E-03
34	GO:0090404: pollen tube tip	6.77E-03
35	GO:0009508: plastid chromosome	8.13E-03
36	GO:0000502: proteasome complex	8.80E-03
37	GO:0030095: chloroplast photosystem II	8.84E-03
38	GO:0000312: plastid small ribosomal subunit	8.84E-03
39	GO:0015629: actin cytoskeleton	1.45E-02
40	GO:0031225: anchored component of membrane	1.56E-02
41	GO:0009523: photosystem II	2.00E-02
42	GO:0009705: plant-type vacuole membrane	2.18E-02
43	GO:0005887: integral component of plasma membrane	2.18E-02
44	GO:0010319: stromule	2.52E-02
45	GO:0030529: intracellular ribonucleoprotein complex	2.73E-02
46	GO:0015934: large ribosomal subunit	3.66E-02
47	GO:0031969: chloroplast membrane	4.17E-02