co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G06940

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006105: succinate metabolic process	0.00E+00
2	GO:0019481: L-alanine catabolic process, by transamination	0.00E+00
3	GO:0019484: beta-alanine catabolic process	0.00E+00
4	GO:0006182: cGMP biosynthetic process	0.00E+00
5	GO:0009448: gamma-aminobutyric acid metabolic process	0.00E+00
6	GO:0098755: maintenance of seed dormancy by absisic acid	0.00E+00
7	GO:0046686: response to cadmium ion	6.83E-06
8	GO:0048194: Golgi vesicle budding	7.04E-06
9	GO:0010184: cytokinin transport	1.25E-04
10	GO:0071366: cellular response to indolebutyric acid stimulus	1.25E-04
11	GO:0009865: pollen tube adhesion	1.25E-04
12	GO:0006540: glutamate decarboxylation to succinate	1.25E-04
13	GO:0042759: long-chain fatty acid biosynthetic process	1.25E-04
14	GO:0035266: meristem growth	1.25E-04
15	GO:0009450: gamma-aminobutyric acid catabolic process	1.25E-04
16	GO:0007292: female gamete generation	1.25E-04
17	GO:0052544: defense response by callose deposition in cell wall	2.10E-04
18	GO:0055046: microgametogenesis	2.77E-04
19	GO:0051788: response to misfolded protein	2.90E-04
20	GO:0009727: detection of ethylene stimulus	2.90E-04
21	GO:0051258: protein polymerization	2.90E-04
22	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	2.90E-04
23	GO:0046488: phosphatidylinositol metabolic process	2.90E-04
24	GO:0042325: regulation of phosphorylation	2.90E-04
25	GO:0010033: response to organic substance	2.90E-04
26	GO:0010498: proteasomal protein catabolic process	4.78E-04
27	GO:0042344: indole glucosinolate catabolic process	4.78E-04
28	GO:0006954: inflammatory response	4.78E-04
29	GO:1900140: regulation of seedling development	4.78E-04
30	GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway	4.78E-04
31	GO:0060968: regulation of gene silencing	4.78E-04
32	GO:0048367: shoot system development	6.47E-04
33	GO:0009561: megagametogenesis	6.80E-04
34	GO:0009306: protein secretion	6.80E-04
35	GO:0009399: nitrogen fixation	6.85E-04
36	GO:0006882: cellular zinc ion homeostasis	6.85E-04
37	GO:0046513: ceramide biosynthetic process	6.85E-04
38	GO:0006020: inositol metabolic process	6.85E-04
39	GO:2001289: lipid X metabolic process	6.85E-04
40	GO:0070301: cellular response to hydrogen peroxide	6.85E-04
41	GO:0006536: glutamate metabolic process	9.08E-04
42	GO:0006878: cellular copper ion homeostasis	9.08E-04
43	GO:0006542: glutamine biosynthetic process	9.08E-04
44	GO:0033320: UDP-D-xylose biosynthetic process	9.08E-04
45	GO:0048364: root development	1.15E-03
46	GO:0048015: phosphatidylinositol-mediated signaling	1.15E-03
47	GO:0005513: detection of calcium ion	1.15E-03
48	GO:0006914: autophagy	1.25E-03
49	GO:0010358: leaf shaping	1.41E-03
50	GO:0002238: response to molecule of fungal origin	1.41E-03
51	GO:0050665: hydrogen peroxide biosynthetic process	1.41E-03
52	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	1.41E-03
53	GO:0015691: cadmium ion transport	1.41E-03
54	GO:0048827: phyllome development	1.41E-03
55	GO:0048232: male gamete generation	1.41E-03
56	GO:0043248: proteasome assembly	1.41E-03
57	GO:0042732: D-xylose metabolic process	1.41E-03
58	GO:0009612: response to mechanical stimulus	1.68E-03
59	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.77E-03
60	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	1.98E-03
61	GO:0046470: phosphatidylcholine metabolic process	1.98E-03
62	GO:0006499: N-terminal protein myristoylation	2.12E-03
63	GO:0010119: regulation of stomatal movement	2.22E-03
64	GO:0006491: N-glycan processing	2.29E-03
65	GO:0009690: cytokinin metabolic process	2.29E-03
66	GO:0006605: protein targeting	2.29E-03
67	GO:0010078: maintenance of root meristem identity	2.29E-03
68	GO:0045087: innate immune response	2.43E-03
69	GO:0010262: somatic embryogenesis	2.61E-03
70	GO:0009051: pentose-phosphate shunt, oxidative branch	2.95E-03
71	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	3.31E-03
72	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.66E-03
73	GO:0006535: cysteine biosynthetic process from serine	3.68E-03
74	GO:0048829: root cap development	3.68E-03
75	GO:0016192: vesicle-mediated transport	3.74E-03
76	GO:0031347: regulation of defense response	3.77E-03
77	GO:0010015: root morphogenesis	4.06E-03
78	GO:0010105: negative regulation of ethylene-activated signaling pathway	4.45E-03
79	GO:0000266: mitochondrial fission	4.45E-03
80	GO:0006006: glucose metabolic process	4.86E-03
81	GO:0006541: glutamine metabolic process	5.28E-03
82	GO:0002237: response to molecule of bacterial origin	5.28E-03
83	GO:0009933: meristem structural organization	5.28E-03
84	GO:0007030: Golgi organization	5.71E-03
85	GO:0005985: sucrose metabolic process	5.71E-03
86	GO:0090351: seedling development	5.71E-03
87	GO:0009969: xyloglucan biosynthetic process	5.71E-03
88	GO:0009225: nucleotide-sugar metabolic process	5.71E-03
89	GO:0006863: purine nucleobase transport	6.15E-03
90	GO:0000162: tryptophan biosynthetic process	6.15E-03
91	GO:0006487: protein N-linked glycosylation	6.61E-03
92	GO:0019344: cysteine biosynthetic process	6.61E-03
93	GO:0016998: cell wall macromolecule catabolic process	7.56E-03
94	GO:0030433: ubiquitin-dependent ERAD pathway	8.05E-03
95	GO:0031348: negative regulation of defense response	8.05E-03
96	GO:0009845: seed germination	8.07E-03
97	GO:0001944: vasculature development	8.56E-03
98	GO:0009625: response to insect	8.56E-03
99	GO:0006012: galactose metabolic process	8.56E-03
100	GO:0006468: protein phosphorylation	8.84E-03
101	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	9.60E-03
102	GO:0042391: regulation of membrane potential	1.01E-02
103	GO:0000413: protein peptidyl-prolyl isomerization	1.01E-02
104	GO:0010150: leaf senescence	1.03E-02
105	GO:0010154: fruit development	1.07E-02
106	GO:0006885: regulation of pH	1.07E-02
107	GO:0010182: sugar mediated signaling pathway	1.07E-02
108	GO:0015031: protein transport	1.08E-02
109	GO:0048544: recognition of pollen	1.12E-02
110	GO:0010183: pollen tube guidance	1.18E-02
111	GO:0006891: intra-Golgi vesicle-mediated transport	1.24E-02
112	GO:0010583: response to cyclopentenone	1.30E-02
113	GO:0071281: cellular response to iron ion	1.36E-02
114	GO:0006904: vesicle docking involved in exocytosis	1.48E-02
115	GO:0001666: response to hypoxia	1.61E-02
116	GO:0010029: regulation of seed germination	1.67E-02
117	GO:0009627: systemic acquired resistance	1.74E-02
118	GO:0042128: nitrate assimilation	1.74E-02
119	GO:0009817: defense response to fungus, incompatible interaction	1.94E-02
120	GO:0048481: plant ovule development	1.94E-02
121	GO:0010311: lateral root formation	2.01E-02
122	GO:0006811: ion transport	2.08E-02
123	GO:0046777: protein autophosphorylation	2.12E-02
124	GO:0010043: response to zinc ion	2.15E-02
125	GO:0006099: tricarboxylic acid cycle	2.37E-02
126	GO:0006886: intracellular protein transport	2.45E-02
127	GO:0006631: fatty acid metabolic process	2.60E-02
128	GO:0051707: response to other organism	2.75E-02
129	GO:0000209: protein polyubiquitination	2.83E-02
130	GO:0016042: lipid catabolic process	2.85E-02
131	GO:0042742: defense response to bacterium	2.90E-02
132	GO:0009644: response to high light intensity	2.91E-02
133	GO:0009408: response to heat	2.93E-02
134	GO:0009965: leaf morphogenesis	2.99E-02
135	GO:0006855: drug transmembrane transport	3.07E-02
136	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	3.15E-02
137	GO:0006812: cation transport	3.24E-02
138	GO:0009846: pollen germination	3.24E-02
139	GO:0006486: protein glycosylation	3.40E-02
140	GO:0006813: potassium ion transport	3.40E-02
141	GO:0009873: ethylene-activated signaling pathway	3.78E-02
142	GO:0006096: glycolytic process	3.83E-02
143	GO:0048316: seed development	3.92E-02
144	GO:0009626: plant-type hypersensitive response	4.01E-02
145	GO:0009620: response to fungus	4.10E-02
146	GO:0018105: peptidyl-serine phosphorylation	4.47E-02
147	GO:0006396: RNA processing	4.47E-02
148	GO:0051726: regulation of cell cycle	4.56E-02
149	GO:0006810: transport	4.66E-02
150	GO:0000398: mRNA splicing, via spliceosome	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0034387: 4-aminobutyrate:pyruvate transaminase activity	0.00E+00
2	GO:0015211: purine nucleoside transmembrane transporter activity	0.00E+00
3	GO:0005548: phospholipid transporter activity	0.00E+00
4	GO:0004012: phospholipid-translocating ATPase activity	1.37E-09
5	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	8.62E-08
6	GO:0004383: guanylate cyclase activity	2.99E-06
7	GO:0005524: ATP binding	4.71E-06
8	GO:0000287: magnesium ion binding	4.88E-05
9	GO:0003867: 4-aminobutyrate transaminase activity	1.25E-04
10	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	1.25E-04
11	GO:0038199: ethylene receptor activity	2.90E-04
12	GO:0050291: sphingosine N-acyltransferase activity	2.90E-04
13	GO:0004674: protein serine/threonine kinase activity	3.27E-04
14	GO:0016805: dipeptidase activity	4.78E-04
15	GO:0005047: signal recognition particle binding	4.78E-04
16	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	6.85E-04
17	GO:0015086: cadmium ion transmembrane transporter activity	6.85E-04
18	GO:0051740: ethylene binding	6.85E-04
19	GO:0004571: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity	6.85E-04
20	GO:0001653: peptide receptor activity	6.85E-04
21	GO:0004576: oligosaccharyl transferase activity	9.08E-04
22	GO:0004834: tryptophan synthase activity	9.08E-04
23	GO:0004345: glucose-6-phosphate dehydrogenase activity	9.08E-04
24	GO:0005546: phosphatidylinositol-4,5-bisphosphate binding	1.15E-03
25	GO:0005496: steroid binding	1.15E-03
26	GO:0004356: glutamate-ammonia ligase activity	1.15E-03
27	GO:0042578: phosphoric ester hydrolase activity	1.41E-03
28	GO:0036402: proteasome-activating ATPase activity	1.41E-03
29	GO:0048040: UDP-glucuronate decarboxylase activity	1.41E-03
30	GO:0004559: alpha-mannosidase activity	1.68E-03
31	GO:0004124: cysteine synthase activity	1.68E-03
32	GO:0070403: NAD+ binding	1.68E-03
33	GO:0004620: phospholipase activity	1.98E-03
34	GO:0008235: metalloexopeptidase activity	1.98E-03
35	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	2.08E-03
36	GO:0004869: cysteine-type endopeptidase inhibitor activity	2.29E-03
37	GO:0004525: ribonuclease III activity	2.29E-03
38	GO:0004714: transmembrane receptor protein tyrosine kinase activity	2.29E-03
39	GO:0004034: aldose 1-epimerase activity	2.29E-03
40	GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity	2.61E-03
41	GO:0004630: phospholipase D activity	2.61E-03
42	GO:0030955: potassium ion binding	3.31E-03
43	GO:0004743: pyruvate kinase activity	3.31E-03
44	GO:0004672: protein kinase activity	3.61E-03
45	GO:0004713: protein tyrosine kinase activity	3.68E-03
46	GO:0004673: protein histidine kinase activity	3.68E-03
47	GO:0004177: aminopeptidase activity	4.06E-03
48	GO:0005516: calmodulin binding	4.78E-03
49	GO:0004022: alcohol dehydrogenase (NAD) activity	4.86E-03
50	GO:0000155: phosphorelay sensor kinase activity	4.86E-03
51	GO:0019888: protein phosphatase regulator activity	4.86E-03
52	GO:0017025: TBP-class protein binding	5.71E-03
53	GO:0030552: cAMP binding	5.71E-03
54	GO:0004867: serine-type endopeptidase inhibitor activity	5.71E-03
55	GO:0030553: cGMP binding	5.71E-03
56	GO:0043130: ubiquitin binding	6.61E-03
57	GO:0005509: calcium ion binding	6.63E-03
58	GO:0005345: purine nucleobase transmembrane transporter activity	7.08E-03
59	GO:0005216: ion channel activity	7.08E-03
60	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	7.66E-03
61	GO:0030170: pyridoxal phosphate binding	8.28E-03
62	GO:0008565: protein transporter activity	8.93E-03
63	GO:0016887: ATPase activity	1.00E-02
64	GO:0030551: cyclic nucleotide binding	1.01E-02
65	GO:0005451: monovalent cation:proton antiporter activity	1.01E-02
66	GO:0005249: voltage-gated potassium channel activity	1.01E-02
67	GO:0015299: solute:proton antiporter activity	1.12E-02
68	GO:0016853: isomerase activity	1.12E-02
69	GO:0000156: phosphorelay response regulator activity	1.36E-02
70	GO:0015385: sodium:proton antiporter activity	1.36E-02
71	GO:0030246: carbohydrate binding	1.74E-02
72	GO:0009931: calcium-dependent protein serine/threonine kinase activity	1.74E-02
73	GO:0030247: polysaccharide binding	1.81E-02
74	GO:0004683: calmodulin-dependent protein kinase activity	1.81E-02
75	GO:0016301: kinase activity	1.90E-02
76	GO:0004497: monooxygenase activity	1.99E-02
77	GO:0005096: GTPase activator activity	2.01E-02
78	GO:0061630: ubiquitin protein ligase activity	2.09E-02
79	GO:0050897: cobalt ion binding	2.15E-02
80	GO:0030145: manganese ion binding	2.15E-02
81	GO:0008422: beta-glucosidase activity	2.45E-02
82	GO:0050661: NADP binding	2.52E-02
83	GO:0003924: GTPase activity	2.93E-02
84	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.07E-02
85	GO:0015171: amino acid transmembrane transporter activity	3.66E-02
86	GO:0045735: nutrient reservoir activity	3.83E-02
87	GO:0016746: transferase activity, transferring acyl groups	4.47E-02

Rank	GO Term	Adjusted P value
1	GO:0005785: signal recognition particle receptor complex	0.00E+00
2	GO:0005886: plasma membrane	9.35E-06
3	GO:0005783: endoplasmic reticulum	6.79E-05
4	GO:0045252: oxoglutarate dehydrogenase complex	1.25E-04
5	GO:0005789: endoplasmic reticulum membrane	2.47E-04
6	GO:0005802: trans-Golgi network	2.66E-04
7	GO:0016602: CCAAT-binding factor complex	2.77E-04
8	GO:0016021: integral component of membrane	3.03E-04
9	GO:0005794: Golgi apparatus	5.53E-04
10	GO:0005776: autophagosome	9.08E-04
11	GO:0005768: endosome	1.53E-03
12	GO:0005774: vacuolar membrane	1.55E-03
13	GO:0031597: cytosolic proteasome complex	1.68E-03
14	GO:0030173: integral component of Golgi membrane	1.68E-03
15	GO:0031595: nuclear proteasome complex	1.98E-03
16	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	2.61E-03
17	GO:0031901: early endosome membrane	2.95E-03
18	GO:0008540: proteasome regulatory particle, base subcomplex	3.31E-03
19	GO:0010008: endosome membrane	5.11E-03
20	GO:0005795: Golgi stack	5.71E-03
21	GO:0031410: cytoplasmic vesicle	8.05E-03
22	GO:0030136: clathrin-coated vesicle	9.60E-03
23	GO:0005770: late endosome	1.07E-02
24	GO:0031902: late endosome membrane	2.60E-02
25	GO:0009506: plasmodesma	2.72E-02
26	GO:0031966: mitochondrial membrane	3.24E-02
27	GO:0000502: proteasome complex	3.40E-02
28	GO:0009505: plant-type cell wall	3.83E-02
29	GO:0005887: integral component of plasma membrane	3.97E-02
30	GO:0005829: cytosol	4.04E-02
31	GO:0000139: Golgi membrane	4.22E-02