GO Enrichment Analysis of Co-expressed Genes with
AT3G06650
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 2 | GO:0006671: phytosphingosine metabolic process | 0.00E+00 |
| 3 | GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 0.00E+00 |
| 4 | GO:0006428: isoleucyl-tRNA aminoacylation | 0.00E+00 |
| 5 | GO:0051503: adenine nucleotide transport | 0.00E+00 |
| 6 | GO:0006695: cholesterol biosynthetic process | 5.03E-08 |
| 7 | GO:0045337: farnesyl diphosphate biosynthetic process | 1.14E-05 |
| 8 | GO:0033384: geranyl diphosphate biosynthetic process | 1.14E-05 |
| 9 | GO:0042761: very long-chain fatty acid biosynthetic process | 1.41E-05 |
| 10 | GO:0006430: lysyl-tRNA aminoacylation | 2.64E-05 |
| 11 | GO:0006418: tRNA aminoacylation for protein translation | 5.56E-05 |
| 12 | GO:0010270: photosystem II oxygen evolving complex assembly | 6.72E-05 |
| 13 | GO:0006650: glycerophospholipid metabolic process | 6.72E-05 |
| 14 | GO:0010581: regulation of starch biosynthetic process | 1.18E-04 |
| 15 | GO:0046902: regulation of mitochondrial membrane permeability | 1.76E-04 |
| 16 | GO:0016556: mRNA modification | 1.76E-04 |
| 17 | GO:2001141: regulation of RNA biosynthetic process | 1.76E-04 |
| 18 | GO:0048481: plant ovule development | 2.69E-04 |
| 19 | GO:0016123: xanthophyll biosynthetic process | 3.07E-04 |
| 20 | GO:0009247: glycolipid biosynthetic process | 3.07E-04 |
| 21 | GO:0016120: carotene biosynthetic process | 3.07E-04 |
| 22 | GO:0042549: photosystem II stabilization | 3.78E-04 |
| 23 | GO:0006828: manganese ion transport | 3.78E-04 |
| 24 | GO:0009854: oxidative photosynthetic carbon pathway | 4.53E-04 |
| 25 | GO:0006401: RNA catabolic process | 5.30E-04 |
| 26 | GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway | 5.30E-04 |
| 27 | GO:0006402: mRNA catabolic process | 6.10E-04 |
| 28 | GO:0019375: galactolipid biosynthetic process | 6.10E-04 |
| 29 | GO:0071482: cellular response to light stimulus | 6.94E-04 |
| 30 | GO:0019430: removal of superoxide radicals | 6.94E-04 |
| 31 | GO:0010380: regulation of chlorophyll biosynthetic process | 8.68E-04 |
| 32 | GO:0031425: chloroplast RNA processing | 8.68E-04 |
| 33 | GO:0006535: cysteine biosynthetic process from serine | 9.59E-04 |
| 34 | GO:0006816: calcium ion transport | 1.05E-03 |
| 35 | GO:0043085: positive regulation of catalytic activity | 1.05E-03 |
| 36 | GO:0006352: DNA-templated transcription, initiation | 1.05E-03 |
| 37 | GO:0010020: chloroplast fission | 1.35E-03 |
| 38 | GO:0010207: photosystem II assembly | 1.35E-03 |
| 39 | GO:0010025: wax biosynthetic process | 1.56E-03 |
| 40 | GO:0019344: cysteine biosynthetic process | 1.67E-03 |
| 41 | GO:0007010: cytoskeleton organization | 1.67E-03 |
| 42 | GO:0008299: isoprenoid biosynthetic process | 1.78E-03 |
| 43 | GO:0071555: cell wall organization | 2.17E-03 |
| 44 | GO:0008033: tRNA processing | 2.52E-03 |
| 45 | GO:0007018: microtubule-based movement | 2.78E-03 |
| 46 | GO:0008654: phospholipid biosynthetic process | 2.91E-03 |
| 47 | GO:0071805: potassium ion transmembrane transport | 3.62E-03 |
| 48 | GO:0010027: thylakoid membrane organization | 3.91E-03 |
| 49 | GO:0042128: nitrate assimilation | 4.22E-03 |
| 50 | GO:0015995: chlorophyll biosynthetic process | 4.37E-03 |
| 51 | GO:0009637: response to blue light | 5.52E-03 |
| 52 | GO:0009853: photorespiration | 5.52E-03 |
| 53 | GO:0010114: response to red light | 6.57E-03 |
| 54 | GO:0009555: pollen development | 6.74E-03 |
| 55 | GO:0035556: intracellular signal transduction | 7.11E-03 |
| 56 | GO:0006364: rRNA processing | 8.08E-03 |
| 57 | GO:0006813: potassium ion transport | 8.08E-03 |
| 58 | GO:0048367: shoot system development | 9.29E-03 |
| 59 | GO:0048316: seed development | 9.29E-03 |
| 60 | GO:0042744: hydrogen peroxide catabolic process | 1.33E-02 |
| 61 | GO:0009790: embryo development | 1.35E-02 |
| 62 | GO:0016036: cellular response to phosphate starvation | 1.45E-02 |
| 63 | GO:0010468: regulation of gene expression | 1.73E-02 |
| 64 | GO:0045944: positive regulation of transcription from RNA polymerase II promoter | 1.97E-02 |
| 65 | GO:0009658: chloroplast organization | 2.07E-02 |
| 66 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 2.48E-02 |
| 67 | GO:0045454: cell redox homeostasis | 2.75E-02 |
| 68 | GO:0009408: response to heat | 3.19E-02 |
| 69 | GO:0006397: mRNA processing | 3.29E-02 |
| 70 | GO:0048364: root development | 3.29E-02 |
| 71 | GO:0016310: phosphorylation | 3.36E-02 |
| 72 | GO:0009738: abscisic acid-activated signaling pathway | 4.69E-02 |
| 73 | GO:0009416: response to light stimulus | 4.80E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
| 2 | GO:0004822: isoleucine-tRNA ligase activity | 0.00E+00 |
| 3 | GO:0008887: glycerate kinase activity | 0.00E+00 |
| 4 | GO:0004337: geranyltranstransferase activity | 1.14E-05 |
| 5 | GO:0004161: dimethylallyltranstransferase activity | 2.07E-05 |
| 6 | GO:0004654: polyribonucleotide nucleotidyltransferase activity | 2.64E-05 |
| 7 | GO:0004824: lysine-tRNA ligase activity | 2.64E-05 |
| 8 | GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity | 6.72E-05 |
| 9 | GO:0050017: L-3-cyanoalanine synthase activity | 6.72E-05 |
| 10 | GO:0004812: aminoacyl-tRNA ligase activity | 9.19E-05 |
| 11 | GO:0017050: D-erythro-sphingosine kinase activity | 1.18E-04 |
| 12 | GO:0002161: aminoacyl-tRNA editing activity | 1.18E-04 |
| 13 | GO:0035250: UDP-galactosyltransferase activity | 1.76E-04 |
| 14 | GO:0001053: plastid sigma factor activity | 2.39E-04 |
| 15 | GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed | 2.39E-04 |
| 16 | GO:0016987: sigma factor activity | 2.39E-04 |
| 17 | GO:0005471: ATP:ADP antiporter activity | 3.07E-04 |
| 18 | GO:0008374: O-acyltransferase activity | 3.07E-04 |
| 19 | GO:0004124: cysteine synthase activity | 4.53E-04 |
| 20 | GO:0004143: diacylglycerol kinase activity | 5.30E-04 |
| 21 | GO:0003951: NAD+ kinase activity | 6.94E-04 |
| 22 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 7.08E-04 |
| 23 | GO:0005384: manganese ion transmembrane transporter activity | 8.68E-04 |
| 24 | GO:0008047: enzyme activator activity | 9.59E-04 |
| 25 | GO:0000049: tRNA binding | 1.15E-03 |
| 26 | GO:0016740: transferase activity | 1.15E-03 |
| 27 | GO:0015095: magnesium ion transmembrane transporter activity | 1.25E-03 |
| 28 | GO:0031072: heat shock protein binding | 1.25E-03 |
| 29 | GO:0000175: 3'-5'-exoribonuclease activity | 1.25E-03 |
| 30 | GO:0008017: microtubule binding | 1.44E-03 |
| 31 | GO:0005528: FK506 binding | 1.67E-03 |
| 32 | GO:0015079: potassium ion transmembrane transporter activity | 1.78E-03 |
| 33 | GO:0019706: protein-cysteine S-palmitoyltransferase activity | 1.90E-03 |
| 34 | GO:0004707: MAP kinase activity | 1.90E-03 |
| 35 | GO:0005524: ATP binding | 1.94E-03 |
| 36 | GO:0004791: thioredoxin-disulfide reductase activity | 2.78E-03 |
| 37 | GO:0050662: coenzyme binding | 2.78E-03 |
| 38 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 3.33E-03 |
| 39 | GO:0008236: serine-type peptidase activity | 4.53E-03 |
| 40 | GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding | 4.53E-03 |
| 41 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 5.69E-03 |
| 42 | GO:0051537: 2 iron, 2 sulfur cluster binding | 6.94E-03 |
| 43 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 7.31E-03 |
| 44 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 8.08E-03 |
| 45 | GO:0003777: microtubule motor activity | 8.68E-03 |
| 46 | GO:0051082: unfolded protein binding | 1.03E-02 |
| 47 | GO:0016746: transferase activity, transferring acyl groups | 1.06E-02 |
| 48 | GO:0030170: pyridoxal phosphate binding | 1.30E-02 |
| 49 | GO:0008194: UDP-glycosyltransferase activity | 1.65E-02 |
| 50 | GO:0046872: metal ion binding | 2.55E-02 |
| 51 | GO:0042803: protein homodimerization activity | 2.84E-02 |
| 52 | GO:0004871: signal transducer activity | 2.84E-02 |
| 53 | GO:0016787: hydrolase activity | 2.94E-02 |
| 54 | GO:0004519: endonuclease activity | 3.39E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0031224: intrinsic component of membrane | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 1.06E-04 |
| 3 | GO:0009535: chloroplast thylakoid membrane | 1.85E-04 |
| 4 | GO:0009941: chloroplast envelope | 7.26E-04 |
| 5 | GO:0009706: chloroplast inner membrane | 8.20E-04 |
| 6 | GO:0009543: chloroplast thylakoid lumen | 1.01E-03 |
| 7 | GO:0030659: cytoplasmic vesicle membrane | 1.35E-03 |
| 8 | GO:0005875: microtubule associated complex | 1.56E-03 |
| 9 | GO:0005871: kinesin complex | 2.39E-03 |
| 10 | GO:0005874: microtubule | 2.51E-03 |
| 11 | GO:0009523: photosystem II | 2.91E-03 |
| 12 | GO:0000325: plant-type vacuole | 5.18E-03 |
| 13 | GO:0009570: chloroplast stroma | 5.65E-03 |
| 14 | GO:0031977: thylakoid lumen | 6.21E-03 |
| 15 | GO:0009536: plastid | 1.68E-02 |
| 16 | GO:0031969: chloroplast membrane | 2.42E-02 |
| 17 | GO:0005743: mitochondrial inner membrane | 3.03E-02 |
| 18 | GO:0043231: intracellular membrane-bounded organelle | 3.42E-02 |
| 19 | GO:0005739: mitochondrion | 3.86E-02 |