co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G06540

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046109: uridine biosynthetic process	0.00E+00
2	GO:0010793: regulation of mRNA export from nucleus	0.00E+00
3	GO:0045185: maintenance of protein location	0.00E+00
4	GO:0032780: negative regulation of ATPase activity	0.00E+00
5	GO:0017186: peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase	0.00E+00
6	GO:2001253: regulation of histone H3-K36 trimethylation	0.00E+00
7	GO:0006144: purine nucleobase metabolic process	4.74E-05
8	GO:0019628: urate catabolic process	4.74E-05
9	GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process	6.88E-05
10	GO:0019441: tryptophan catabolic process to kynurenine	1.17E-04
11	GO:0050684: regulation of mRNA processing	1.17E-04
12	GO:0051258: protein polymerization	1.17E-04
13	GO:0032784: regulation of DNA-templated transcription, elongation	2.00E-04
14	GO:0009052: pentose-phosphate shunt, non-oxidative branch	2.94E-04
15	GO:0006542: glutamine biosynthetic process	3.94E-04
16	GO:0033320: UDP-D-xylose biosynthetic process	3.94E-04
17	GO:0098719: sodium ion import across plasma membrane	5.00E-04
18	GO:0006014: D-ribose metabolic process	6.13E-04
19	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	6.13E-04
20	GO:0070814: hydrogen sulfide biosynthetic process	6.13E-04
21	GO:0042732: D-xylose metabolic process	6.13E-04
22	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	8.54E-04
23	GO:0000209: protein polyubiquitination	9.27E-04
24	GO:0006605: protein targeting	9.81E-04
25	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	1.07E-03
26	GO:0007389: pattern specification process	1.11E-03
27	GO:0051453: regulation of intracellular pH	1.40E-03
28	GO:0007064: mitotic sister chromatid cohesion	1.55E-03
29	GO:0000103: sulfate assimilation	1.55E-03
30	GO:0043069: negative regulation of programmed cell death	1.55E-03
31	GO:0048829: root cap development	1.55E-03
32	GO:0006468: protein phosphorylation	1.82E-03
33	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	1.86E-03
34	GO:0071365: cellular response to auxin stimulus	1.86E-03
35	GO:0048467: gynoecium development	2.20E-03
36	GO:0009225: nucleotide-sugar metabolic process	2.38E-03
37	GO:0007031: peroxisome organization	2.38E-03
38	GO:0034976: response to endoplasmic reticulum stress	2.56E-03
39	GO:0030433: ubiquitin-dependent ERAD pathway	3.32E-03
40	GO:0006814: sodium ion transport	4.59E-03
41	GO:0019252: starch biosynthetic process	4.81E-03
42	GO:0080156: mitochondrial mRNA modification	5.04E-03
43	GO:0010583: response to cyclopentenone	5.28E-03
44	GO:0006914: autophagy	5.75E-03
45	GO:0071805: potassium ion transmembrane transport	6.00E-03
46	GO:0009816: defense response to bacterium, incompatible interaction	6.75E-03
47	GO:0042128: nitrate assimilation	7.01E-03
48	GO:0030244: cellulose biosynthetic process	7.81E-03
49	GO:0006499: N-terminal protein myristoylation	8.37E-03
50	GO:0016051: carbohydrate biosynthetic process	9.22E-03
51	GO:0046686: response to cadmium ion	9.83E-03
52	GO:0009734: auxin-activated signaling pathway	1.13E-02
53	GO:0018105: peptidyl-serine phosphorylation	1.78E-02
54	GO:0009742: brassinosteroid mediated signaling pathway	1.82E-02
55	GO:0006633: fatty acid biosynthetic process	2.41E-02
56	GO:0006470: protein dephosphorylation	2.83E-02
57	GO:0010468: regulation of gene expression	2.92E-02
58	GO:0009733: response to auxin	3.24E-02
59	GO:0080167: response to karrikin	4.09E-02
60	GO:0016192: vesicle-mediated transport	4.24E-02
61	GO:0046777: protein autophosphorylation	4.30E-02
62	GO:0045454: cell redox homeostasis	4.65E-02

Rank	GO Term	Adjusted P value
1	GO:0042030: ATPase inhibitor activity	0.00E+00
2	GO:0016603: glutaminyl-peptide cyclotransferase activity	0.00E+00
3	GO:0004846: urate oxidase activity	0.00E+00
4	GO:0005524: ATP binding	2.73E-05
5	GO:0031624: ubiquitin conjugating enzyme binding	7.90E-05
6	GO:0004061: arylformamidase activity	1.17E-04
7	GO:0004751: ribose-5-phosphate isomerase activity	2.00E-04
8	GO:0004781: sulfate adenylyltransferase (ATP) activity	2.00E-04
9	GO:0004180: carboxypeptidase activity	2.00E-04
10	GO:0005047: signal recognition particle binding	2.00E-04
11	GO:0035198: miRNA binding	2.94E-04
12	GO:0004356: glutamate-ammonia ligase activity	5.00E-04
13	GO:0005546: phosphatidylinositol-4,5-bisphosphate binding	5.00E-04
14	GO:0036402: proteasome-activating ATPase activity	6.13E-04
15	GO:0048040: UDP-glucuronate decarboxylase activity	6.13E-04
16	GO:0070403: NAD+ binding	7.31E-04
17	GO:0004012: phospholipid-translocating ATPase activity	7.31E-04
18	GO:0004747: ribokinase activity	7.31E-04
19	GO:0008865: fructokinase activity	9.81E-04
20	GO:0004630: phospholipase D activity	1.11E-03
21	GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity	1.11E-03
22	GO:0047617: acyl-CoA hydrolase activity	1.40E-03
23	GO:0004713: protein tyrosine kinase activity	1.55E-03
24	GO:0015386: potassium:proton antiporter activity	1.70E-03
25	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	2.03E-03
26	GO:0017025: TBP-class protein binding	2.38E-03
27	GO:0016301: kinase activity	2.65E-03
28	GO:0043130: ubiquitin binding	2.74E-03
29	GO:0003756: protein disulfide isomerase activity	3.73E-03
30	GO:0008080: N-acetyltransferase activity	4.37E-03
31	GO:0016853: isomerase activity	4.59E-03
32	GO:0015385: sodium:proton antiporter activity	5.52E-03
33	GO:0061630: ubiquitin protein ligase activity	5.70E-03
34	GO:0009931: calcium-dependent protein serine/threonine kinase activity	7.01E-03
35	GO:0004683: calmodulin-dependent protein kinase activity	7.28E-03
36	GO:0008236: serine-type peptidase activity	7.54E-03
37	GO:0003924: GTPase activity	7.99E-03
38	GO:0003697: single-stranded DNA binding	9.22E-03
39	GO:0004712: protein serine/threonine/tyrosine kinase activity	9.80E-03
40	GO:0004674: protein serine/threonine kinase activity	1.15E-02
41	GO:0043621: protein self-association	1.16E-02
42	GO:0016887: ATPase activity	1.24E-02
43	GO:0016874: ligase activity	1.67E-02
44	GO:0005507: copper ion binding	2.03E-02
45	GO:0005516: calmodulin binding	2.14E-02
46	GO:0005525: GTP binding	2.34E-02
47	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	3.05E-02
48	GO:0003824: catalytic activity	3.17E-02
49	GO:0000287: magnesium ion binding	3.47E-02
50	GO:0016788: hydrolase activity, acting on ester bonds	3.56E-02
51	GO:0003682: chromatin binding	3.66E-02
52	GO:0004842: ubiquitin-protein transferase activity	3.98E-02
53	GO:0004672: protein kinase activity	4.23E-02
54	GO:0003729: mRNA binding	4.28E-02
55	GO:0004722: protein serine/threonine phosphatase activity	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0005785: signal recognition particle receptor complex	0.00E+00
2	GO:0005886: plasma membrane	1.06E-04
3	GO:0032580: Golgi cisterna membrane	3.63E-04
4	GO:0000151: ubiquitin ligase complex	5.59E-04
5	GO:0031597: cytosolic proteasome complex	7.31E-04
6	GO:0031595: nuclear proteasome complex	8.54E-04
7	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	1.11E-03
8	GO:0000502: proteasome complex	1.18E-03
9	GO:0008540: proteasome regulatory particle, base subcomplex	1.40E-03
10	GO:0090404: pollen tube tip	1.70E-03
11	GO:0005768: endosome	4.90E-03
12	GO:0005788: endoplasmic reticulum lumen	6.75E-03
13	GO:0031902: late endosome membrane	1.04E-02
14	GO:0005747: mitochondrial respiratory chain complex I	1.57E-02
15	GO:0010008: endosome membrane	1.57E-02
16	GO:0005777: peroxisome	1.63E-02
17	GO:0005802: trans-Golgi network	2.28E-02
18	GO:0005618: cell wall	3.19E-02
19	GO:0005789: endoplasmic reticulum membrane	4.39E-02
20	GO:0005773: vacuole	4.57E-02
21	GO:0016021: integral component of membrane	4.69E-02
22	GO:0009506: plasmodesma	4.95E-02