GO Enrichment Analysis of Co-expressed Genes with
AT3G06500
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1903428: positive regulation of reactive oxygen species biosynthetic process | 0.00E+00 |
| 2 | GO:0070584: mitochondrion morphogenesis | 0.00E+00 |
| 3 | GO:0009768: photosynthesis, light harvesting in photosystem I | 1.10E-16 |
| 4 | GO:0018298: protein-chromophore linkage | 6.59E-12 |
| 5 | GO:0015979: photosynthesis | 4.39E-10 |
| 6 | GO:0009645: response to low light intensity stimulus | 1.58E-08 |
| 7 | GO:0010218: response to far red light | 1.29E-07 |
| 8 | GO:0010114: response to red light | 3.17E-07 |
| 9 | GO:0009644: response to high light intensity | 3.79E-07 |
| 10 | GO:0009769: photosynthesis, light harvesting in photosystem II | 5.50E-06 |
| 11 | GO:0009409: response to cold | 5.83E-06 |
| 12 | GO:0097054: L-glutamate biosynthetic process | 7.01E-05 |
| 13 | GO:0051170: nuclear import | 7.01E-05 |
| 14 | GO:0009416: response to light stimulus | 1.10E-04 |
| 15 | GO:0006598: polyamine catabolic process | 1.23E-04 |
| 16 | GO:0006537: glutamate biosynthetic process | 1.83E-04 |
| 17 | GO:0031936: negative regulation of chromatin silencing | 1.83E-04 |
| 18 | GO:0050482: arachidonic acid secretion | 1.83E-04 |
| 19 | GO:0030104: water homeostasis | 2.48E-04 |
| 20 | GO:0019676: ammonia assimilation cycle | 2.48E-04 |
| 21 | GO:0009765: photosynthesis, light harvesting | 2.48E-04 |
| 22 | GO:0010600: regulation of auxin biosynthetic process | 2.48E-04 |
| 23 | GO:0015995: chlorophyll biosynthetic process | 2.56E-04 |
| 24 | GO:0080167: response to karrikin | 2.86E-04 |
| 25 | GO:0009637: response to blue light | 3.60E-04 |
| 26 | GO:0009635: response to herbicide | 3.92E-04 |
| 27 | GO:0010244: response to low fluence blue light stimulus by blue low-fluence system | 4.69E-04 |
| 28 | GO:0010161: red light signaling pathway | 5.49E-04 |
| 29 | GO:0010196: nonphotochemical quenching | 5.49E-04 |
| 30 | GO:0080111: DNA demethylation | 5.49E-04 |
| 31 | GO:0009704: de-etiolation | 6.32E-04 |
| 32 | GO:0006644: phospholipid metabolic process | 6.32E-04 |
| 33 | GO:0010928: regulation of auxin mediated signaling pathway | 6.32E-04 |
| 34 | GO:0010099: regulation of photomorphogenesis | 7.18E-04 |
| 35 | GO:0007186: G-protein coupled receptor signaling pathway | 7.18E-04 |
| 36 | GO:0090333: regulation of stomatal closure | 8.07E-04 |
| 37 | GO:0048589: developmental growth | 8.07E-04 |
| 38 | GO:0009641: shade avoidance | 9.92E-04 |
| 39 | GO:0046856: phosphatidylinositol dephosphorylation | 1.09E-03 |
| 40 | GO:0009718: anthocyanin-containing compound biosynthetic process | 1.29E-03 |
| 41 | GO:0019853: L-ascorbic acid biosynthetic process | 1.50E-03 |
| 42 | GO:0006636: unsaturated fatty acid biosynthetic process | 1.62E-03 |
| 43 | GO:0006874: cellular calcium ion homeostasis | 1.85E-03 |
| 44 | GO:0048511: rhythmic process | 1.97E-03 |
| 45 | GO:0061077: chaperone-mediated protein folding | 1.97E-03 |
| 46 | GO:0009269: response to desiccation | 1.97E-03 |
| 47 | GO:0010017: red or far-red light signaling pathway | 2.09E-03 |
| 48 | GO:0006012: galactose metabolic process | 2.22E-03 |
| 49 | GO:0071215: cellular response to abscisic acid stimulus | 2.22E-03 |
| 50 | GO:0008284: positive regulation of cell proliferation | 2.48E-03 |
| 51 | GO:0006814: sodium ion transport | 2.88E-03 |
| 52 | GO:1901657: glycosyl compound metabolic process | 3.45E-03 |
| 53 | GO:0042128: nitrate assimilation | 4.38E-03 |
| 54 | GO:0000160: phosphorelay signal transduction system | 5.04E-03 |
| 55 | GO:0006811: ion transport | 5.21E-03 |
| 56 | GO:0010119: regulation of stomatal movement | 5.38E-03 |
| 57 | GO:0009631: cold acclimation | 5.38E-03 |
| 58 | GO:0009735: response to cytokinin | 6.51E-03 |
| 59 | GO:0051707: response to other organism | 6.82E-03 |
| 60 | GO:0009640: photomorphogenesis | 6.82E-03 |
| 61 | GO:0006351: transcription, DNA-templated | 7.49E-03 |
| 62 | GO:0006812: cation transport | 7.99E-03 |
| 63 | GO:0042538: hyperosmotic salinity response | 7.99E-03 |
| 64 | GO:0009585: red, far-red light phototransduction | 8.40E-03 |
| 65 | GO:0055085: transmembrane transport | 9.04E-03 |
| 66 | GO:0043086: negative regulation of catalytic activity | 9.44E-03 |
| 67 | GO:0009624: response to nematode | 1.07E-02 |
| 68 | GO:0009845: seed germination | 1.33E-02 |
| 69 | GO:0009414: response to water deprivation | 1.41E-02 |
| 70 | GO:0007623: circadian rhythm | 1.58E-02 |
| 71 | GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process | 1.71E-02 |
| 72 | GO:0006355: regulation of transcription, DNA-templated | 1.79E-02 |
| 73 | GO:0045944: positive regulation of transcription from RNA polymerase II promoter | 2.04E-02 |
| 74 | GO:0055114: oxidation-reduction process | 2.08E-02 |
| 75 | GO:0009658: chloroplast organization | 2.16E-02 |
| 76 | GO:0005975: carbohydrate metabolic process | 2.20E-02 |
| 77 | GO:0007049: cell cycle | 2.33E-02 |
| 78 | GO:0009723: response to ethylene | 2.39E-02 |
| 79 | GO:0010200: response to chitin | 2.58E-02 |
| 80 | GO:0045892: negative regulation of transcription, DNA-templated | 2.89E-02 |
| 81 | GO:0016042: lipid catabolic process | 3.25E-02 |
| 82 | GO:0006629: lipid metabolic process | 3.32E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0016040: glutamate synthase (NADH) activity | 0.00E+00 |
| 2 | GO:0080082: esculin beta-glucosidase activity | 0.00E+00 |
| 3 | GO:0102985: Delta12-fatty-acid desaturase activity | 0.00E+00 |
| 4 | GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity | 0.00E+00 |
| 5 | GO:0047668: amygdalin beta-glucosidase activity | 0.00E+00 |
| 6 | GO:0080083: beta-gentiobiose beta-glucosidase activity | 0.00E+00 |
| 7 | GO:0016720: delta12-fatty acid dehydrogenase activity | 0.00E+00 |
| 8 | GO:0030504: inorganic diphosphate transmembrane transporter activity | 0.00E+00 |
| 9 | GO:0010349: L-galactose dehydrogenase activity | 0.00E+00 |
| 10 | GO:0004567: beta-mannosidase activity | 0.00E+00 |
| 11 | GO:0031409: pigment binding | 4.60E-17 |
| 12 | GO:0016168: chlorophyll binding | 1.68E-14 |
| 13 | GO:0080079: cellobiose glucosidase activity | 2.76E-05 |
| 14 | GO:0045485: omega-6 fatty acid desaturase activity | 2.76E-05 |
| 15 | GO:0016630: protochlorophyllide reductase activity | 7.01E-05 |
| 16 | GO:0046592: polyamine oxidase activity | 1.23E-04 |
| 17 | GO:0004930: G-protein coupled receptor activity | 2.48E-04 |
| 18 | GO:0046872: metal ion binding | 2.53E-04 |
| 19 | GO:0004623: phospholipase A2 activity | 3.18E-04 |
| 20 | GO:0051538: 3 iron, 4 sulfur cluster binding | 3.18E-04 |
| 21 | GO:0015562: efflux transmembrane transporter activity | 3.92E-04 |
| 22 | GO:0004033: aldo-keto reductase (NADP) activity | 6.32E-04 |
| 23 | GO:0000989: transcription factor activity, transcription factor binding | 8.07E-04 |
| 24 | GO:0044183: protein binding involved in protein folding | 1.09E-03 |
| 25 | GO:0047372: acylglycerol lipase activity | 1.09E-03 |
| 26 | GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity | 1.19E-03 |
| 27 | GO:0005315: inorganic phosphate transmembrane transporter activity | 1.29E-03 |
| 28 | GO:0004565: beta-galactosidase activity | 1.29E-03 |
| 29 | GO:0008131: primary amine oxidase activity | 1.40E-03 |
| 30 | GO:0005217: intracellular ligand-gated ion channel activity | 1.50E-03 |
| 31 | GO:0004970: ionotropic glutamate receptor activity | 1.50E-03 |
| 32 | GO:0005216: ion channel activity | 1.85E-03 |
| 33 | GO:0008324: cation transmembrane transporter activity | 1.85E-03 |
| 34 | GO:0008514: organic anion transmembrane transporter activity | 2.35E-03 |
| 35 | GO:0003682: chromatin binding | 2.35E-03 |
| 36 | GO:0008536: Ran GTPase binding | 2.74E-03 |
| 37 | GO:0010181: FMN binding | 2.88E-03 |
| 38 | GO:0000156: phosphorelay response regulator activity | 3.45E-03 |
| 39 | GO:0102483: scopolin beta-glucosidase activity | 4.54E-03 |
| 40 | GO:0008422: beta-glucosidase activity | 6.09E-03 |
| 41 | GO:0016787: hydrolase activity | 6.09E-03 |
| 42 | GO:0042393: histone binding | 6.27E-03 |
| 43 | GO:0015293: symporter activity | 7.40E-03 |
| 44 | GO:0005198: structural molecule activity | 7.40E-03 |
| 45 | GO:0005515: protein binding | 1.27E-02 |
| 46 | GO:0015144: carbohydrate transmembrane transporter activity | 1.43E-02 |
| 47 | GO:0046910: pectinesterase inhibitor activity | 1.51E-02 |
| 48 | GO:0005351: sugar:proton symporter activity | 1.56E-02 |
| 49 | GO:0003700: transcription factor activity, sequence-specific DNA binding | 2.03E-02 |
| 50 | GO:0050660: flavin adenine dinucleotide binding | 2.39E-02 |
| 51 | GO:0061630: ubiquitin protein ligase activity | 2.61E-02 |
| 52 | GO:0003677: DNA binding | 2.72E-02 |
| 53 | GO:0016887: ATPase activity | 4.53E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009534: chloroplast thylakoid | 2.74E-13 |
| 2 | GO:0009522: photosystem I | 4.64E-13 |
| 3 | GO:0030076: light-harvesting complex | 5.40E-12 |
| 4 | GO:0010287: plastoglobule | 5.91E-12 |
| 5 | GO:0009579: thylakoid | 4.89E-10 |
| 6 | GO:0009535: chloroplast thylakoid membrane | 4.75E-09 |
| 7 | GO:0009523: photosystem II | 1.98E-08 |
| 8 | GO:0009941: chloroplast envelope | 1.70E-06 |
| 9 | GO:0009783: photosystem II antenna complex | 2.76E-05 |
| 10 | GO:0009507: chloroplast | 1.44E-04 |
| 11 | GO:0009517: PSII associated light-harvesting complex II | 2.48E-04 |
| 12 | GO:0031090: organelle membrane | 8.07E-04 |
| 13 | GO:0042651: thylakoid membrane | 1.85E-03 |
| 14 | GO:0031410: cytoplasmic vesicle | 2.09E-03 |
| 15 | GO:0016020: membrane | 2.22E-03 |
| 16 | GO:0016021: integral component of membrane | 3.82E-03 |
| 17 | GO:0005667: transcription factor complex | 4.38E-03 |
| 18 | GO:0009707: chloroplast outer membrane | 4.87E-03 |
| 19 | GO:0016607: nuclear speck | 9.65E-03 |
| 20 | GO:0005623: cell | 1.28E-02 |
| 21 | GO:0009505: plant-type cell wall | 1.81E-02 |
| 22 | GO:0022626: cytosolic ribosome | 4.84E-02 |
| 23 | GO:0005774: vacuolar membrane | 4.99E-02 |