Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G06300

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0072660: maintenance of protein location in plasma membrane0.00E+00
2GO:0015690: aluminum cation transport0.00E+00
3GO:0042430: indole-containing compound metabolic process0.00E+00
4GO:0009617: response to bacterium1.04E-06
5GO:0006099: tricarboxylic acid cycle3.43E-06
6GO:0009737: response to abscisic acid1.22E-05
7GO:0000162: tryptophan biosynthetic process4.44E-05
8GO:0042742: defense response to bacterium1.25E-04
9GO:0055114: oxidation-reduction process1.26E-04
10GO:0006468: protein phosphorylation1.48E-04
11GO:0006102: isocitrate metabolic process1.82E-04
12GO:0050832: defense response to fungus1.97E-04
13GO:0000302: response to reactive oxygen species2.02E-04
14GO:0032491: detection of molecule of fungal origin2.13E-04
15GO:0080120: CAAX-box protein maturation2.13E-04
16GO:0034975: protein folding in endoplasmic reticulum2.13E-04
17GO:0071586: CAAX-box protein processing2.13E-04
18GO:0051245: negative regulation of cellular defense response2.13E-04
19GO:0080173: male-female gamete recognition during double fertilization2.13E-04
20GO:0009609: response to symbiotic bacterium2.13E-04
21GO:0033306: phytol metabolic process2.13E-04
22GO:0055081: anion homeostasis2.13E-04
23GO:0010204: defense response signaling pathway, resistance gene-independent2.25E-04
24GO:0009626: plant-type hypersensitive response2.41E-04
25GO:0043069: negative regulation of programmed cell death3.82E-04
26GO:0006032: chitin catabolic process3.82E-04
27GO:0015914: phospholipid transport4.76E-04
28GO:0080151: positive regulation of salicylic acid mediated signaling pathway4.76E-04
29GO:0019521: D-gluconate metabolic process4.76E-04
30GO:0002240: response to molecule of oomycetes origin4.76E-04
31GO:0031349: positive regulation of defense response4.76E-04
32GO:0070588: calcium ion transmembrane transport7.24E-04
33GO:0072661: protein targeting to plasma membrane7.74E-04
34GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway7.74E-04
35GO:0051707: response to other organism8.74E-04
36GO:0016998: cell wall macromolecule catabolic process1.07E-03
37GO:0001676: long-chain fatty acid metabolic process1.10E-03
38GO:0046836: glycolipid transport1.10E-03
39GO:0010116: positive regulation of abscisic acid biosynthetic process1.10E-03
40GO:0019438: aromatic compound biosynthetic process1.10E-03
41GO:0043207: response to external biotic stimulus1.10E-03
42GO:0006612: protein targeting to membrane1.10E-03
43GO:0010148: transpiration1.10E-03
44GO:0031348: negative regulation of defense response1.17E-03
45GO:0071456: cellular response to hypoxia1.17E-03
46GO:0046686: response to cadmium ion1.41E-03
47GO:1901141: regulation of lignin biosynthetic process1.47E-03
48GO:0046345: abscisic acid catabolic process1.47E-03
49GO:0010363: regulation of plant-type hypersensitive response1.47E-03
50GO:0042631: cellular response to water deprivation1.61E-03
51GO:0009620: response to fungus1.76E-03
52GO:0009646: response to absence of light1.86E-03
53GO:0006564: L-serine biosynthetic process1.87E-03
54GO:0009697: salicylic acid biosynthetic process1.87E-03
55GO:0016192: vesicle-mediated transport1.99E-03
56GO:0002238: response to molecule of fungal origin2.31E-03
57GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly2.31E-03
58GO:0006796: phosphate-containing compound metabolic process2.31E-03
59GO:0009117: nucleotide metabolic process2.31E-03
60GO:0009651: response to salt stress2.62E-03
61GO:0071470: cellular response to osmotic stress2.77E-03
62GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response2.77E-03
63GO:0009094: L-phenylalanine biosynthetic process2.77E-03
64GO:0032259: methylation3.13E-03
65GO:1902074: response to salt3.26E-03
66GO:0009610: response to symbiotic fungus3.26E-03
67GO:0009395: phospholipid catabolic process3.26E-03
68GO:0006511: ubiquitin-dependent protein catabolic process3.40E-03
69GO:0009409: response to cold3.53E-03
70GO:0050821: protein stabilization3.78E-03
71GO:0010928: regulation of auxin mediated signaling pathway3.78E-03
72GO:0009787: regulation of abscisic acid-activated signaling pathway3.78E-03
73GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline3.78E-03
74GO:0043562: cellular response to nitrogen levels4.33E-03
75GO:0009699: phenylpropanoid biosynthetic process4.33E-03
76GO:0010497: plasmodesmata-mediated intercellular transport4.33E-03
77GO:0010120: camalexin biosynthetic process4.33E-03
78GO:0009407: toxin catabolic process4.41E-03
79GO:0010119: regulation of stomatal movement4.62E-03
80GO:0006754: ATP biosynthetic process4.90E-03
81GO:0046685: response to arsenic-containing substance4.90E-03
82GO:0006098: pentose-phosphate shunt4.90E-03
83GO:0019432: triglyceride biosynthetic process4.90E-03
84GO:2000280: regulation of root development5.50E-03
85GO:0006887: exocytosis6.02E-03
86GO:0009870: defense response signaling pathway, resistance gene-dependent6.12E-03
87GO:0000272: polysaccharide catabolic process6.77E-03
88GO:0048229: gametophyte development6.77E-03
89GO:0009682: induced systemic resistance6.77E-03
90GO:0052544: defense response by callose deposition in cell wall6.77E-03
91GO:0006979: response to oxidative stress6.93E-03
92GO:0009636: response to toxic substance7.34E-03
93GO:0006970: response to osmotic stress7.55E-03
94GO:2000028: regulation of photoperiodism, flowering8.13E-03
95GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process8.13E-03
96GO:0006807: nitrogen compound metabolic process8.13E-03
97GO:0006541: glutamine metabolic process8.84E-03
98GO:0002237: response to molecule of bacterial origin8.84E-03
99GO:0080167: response to karrikin9.04E-03
100GO:0010200: response to chitin9.44E-03
101GO:0046688: response to copper ion9.58E-03
102GO:0046777: protein autophosphorylation9.85E-03
103GO:0000027: ribosomal large subunit assembly1.11E-02
104GO:0009863: salicylic acid mediated signaling pathway1.11E-02
105GO:0080147: root hair cell development1.11E-02
106GO:0045454: cell redox homeostasis1.14E-02
107GO:0006886: intracellular protein transport1.18E-02
108GO:0006825: copper ion transport1.19E-02
109GO:0010431: seed maturation1.27E-02
110GO:0048278: vesicle docking1.27E-02
111GO:0030433: ubiquitin-dependent ERAD pathway1.36E-02
112GO:0009814: defense response, incompatible interaction1.36E-02
113GO:0009625: response to insect1.45E-02
114GO:0070417: cellular response to cold1.62E-02
115GO:0009845: seed germination1.71E-02
116GO:0000413: protein peptidyl-prolyl isomerization1.72E-02
117GO:0042391: regulation of membrane potential1.72E-02
118GO:0010197: polar nucleus fusion1.81E-02
119GO:0071472: cellular response to salt stress1.81E-02
120GO:0010154: fruit development1.81E-02
121GO:0048544: recognition of pollen1.91E-02
122GO:0015986: ATP synthesis coupled proton transport1.91E-02
123GO:0061025: membrane fusion1.91E-02
124GO:0009851: auxin biosynthetic process2.00E-02
125GO:0010193: response to ozone2.10E-02
126GO:0006952: defense response2.16E-02
127GO:0032502: developmental process2.20E-02
128GO:0009630: gravitropism2.20E-02
129GO:0030163: protein catabolic process2.31E-02
130GO:0006464: cellular protein modification process2.41E-02
131GO:0006904: vesicle docking involved in exocytosis2.52E-02
132GO:0009816: defense response to bacterium, incompatible interaction2.84E-02
133GO:0009627: systemic acquired resistance2.95E-02
134GO:0006906: vesicle fusion2.95E-02
135GO:0016310: phosphorylation3.17E-02
136GO:0015031: protein transport3.28E-02
137GO:0009813: flavonoid biosynthetic process3.42E-02
138GO:0042254: ribosome biogenesis3.43E-02
139GO:0010043: response to zinc ion3.66E-02
140GO:0009723: response to ethylene3.89E-02
141GO:0009867: jasmonic acid mediated signaling pathway3.91E-02
142GO:0045087: innate immune response3.91E-02
143GO:0006631: fatty acid metabolic process4.41E-02
144GO:0044550: secondary metabolite biosynthetic process4.53E-02
145GO:0042542: response to hydrogen peroxide4.55E-02
146GO:0000209: protein polyubiquitination4.81E-02
RankGO TermAdjusted P value
1GO:0050269: coniferyl-aldehyde dehydrogenase activity0.00E+00
2GO:0052642: lysophosphatidic acid phosphatase activity0.00E+00
3GO:0047720: indoleacetaldoxime dehydratase activity0.00E+00
4GO:0004674: protein serine/threonine kinase activity4.21E-06
5GO:0005507: copper ion binding4.31E-05
6GO:0004298: threonine-type endopeptidase activity7.11E-05
7GO:0051287: NAD binding1.35E-04
8GO:0008320: protein transmembrane transporter activity1.42E-04
9GO:0016301: kinase activity1.43E-04
10GO:0005524: ATP binding1.59E-04
11GO:0004425: indole-3-glycerol-phosphate synthase activity2.13E-04
12GO:0033984: indole-3-glycerol-phosphate lyase activity2.13E-04
13GO:0004591: oxoglutarate dehydrogenase (succinyl-transferring) activity2.13E-04
14GO:0008233: peptidase activity3.51E-04
15GO:0004568: chitinase activity3.82E-04
16GO:0008171: O-methyltransferase activity3.82E-04
17GO:0004450: isocitrate dehydrogenase (NADP+) activity4.76E-04
18GO:0004385: guanylate kinase activity4.76E-04
19GO:0004776: succinate-CoA ligase (GDP-forming) activity4.76E-04
20GO:0004634: phosphopyruvate hydratase activity4.76E-04
21GO:0004617: phosphoglycerate dehydrogenase activity4.76E-04
22GO:0004775: succinate-CoA ligase (ADP-forming) activity4.76E-04
23GO:0005388: calcium-transporting ATPase activity5.75E-04
24GO:0004049: anthranilate synthase activity7.74E-04
25GO:0004324: ferredoxin-NADP+ reductase activity7.74E-04
26GO:0016531: copper chaperone activity7.74E-04
27GO:0004148: dihydrolipoyl dehydrogenase activity7.74E-04
28GO:0005516: calmodulin binding1.08E-03
29GO:0017089: glycolipid transporter activity1.10E-03
30GO:0008276: protein methyltransferase activity1.10E-03
31GO:0035529: NADH pyrophosphatase activity1.10E-03
32GO:0004449: isocitrate dehydrogenase (NAD+) activity1.10E-03
33GO:0047769: arogenate dehydratase activity1.47E-03
34GO:0004834: tryptophan synthase activity1.47E-03
35GO:0004664: prephenate dehydratase activity1.47E-03
36GO:0051861: glycolipid binding1.47E-03
37GO:0043495: protein anchor1.47E-03
38GO:0047631: ADP-ribose diphosphatase activity1.87E-03
39GO:0045431: flavonol synthase activity1.87E-03
40GO:0010294: abscisic acid glucosyltransferase activity1.87E-03
41GO:0036402: proteasome-activating ATPase activity2.31E-03
42GO:0030976: thiamine pyrophosphate binding2.31E-03
43GO:0000210: NAD+ diphosphatase activity2.31E-03
44GO:0004029: aldehyde dehydrogenase (NAD) activity2.31E-03
45GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity2.31E-03
46GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity2.31E-03
47GO:0008237: metallopeptidase activity2.74E-03
48GO:0004656: procollagen-proline 4-dioxygenase activity2.77E-03
49GO:0051920: peroxiredoxin activity2.77E-03
50GO:0102391: decanoate--CoA ligase activity2.77E-03
51GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity2.77E-03
52GO:0004144: diacylglycerol O-acyltransferase activity2.77E-03
53GO:0016597: amino acid binding2.90E-03
54GO:0004467: long-chain fatty acid-CoA ligase activity3.26E-03
55GO:0008121: ubiquinol-cytochrome-c reductase activity3.26E-03
56GO:0004683: calmodulin-dependent protein kinase activity3.61E-03
57GO:0016209: antioxidant activity3.78E-03
58GO:0008757: S-adenosylmethionine-dependent methyltransferase activity3.81E-03
59GO:0050897: cobalt ion binding4.62E-03
60GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity5.50E-03
61GO:0004364: glutathione transferase activity6.27E-03
62GO:0008168: methyltransferase activity6.55E-03
63GO:0000287: magnesium ion binding6.71E-03
64GO:0004129: cytochrome-c oxidase activity6.77E-03
65GO:0005262: calcium channel activity8.13E-03
66GO:0031624: ubiquitin conjugating enzyme binding8.84E-03
67GO:0004175: endopeptidase activity8.84E-03
68GO:0004190: aspartic-type endopeptidase activity9.58E-03
69GO:0030552: cAMP binding9.58E-03
70GO:0030553: cGMP binding9.58E-03
71GO:0017025: TBP-class protein binding9.58E-03
72GO:0008061: chitin binding9.58E-03
73GO:0003712: transcription cofactor activity9.58E-03
74GO:0016491: oxidoreductase activity1.10E-02
75GO:0031418: L-ascorbic acid binding1.11E-02
76GO:0005216: ion channel activity1.19E-02
77GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen1.25E-02
78GO:0030246: carbohydrate binding1.25E-02
79GO:0016746: transferase activity, transferring acyl groups1.29E-02
80GO:0004672: protein kinase activity1.33E-02
81GO:0003756: protein disulfide isomerase activity1.53E-02
82GO:0004499: N,N-dimethylaniline monooxygenase activity1.53E-02
83GO:0005249: voltage-gated potassium channel activity1.72E-02
84GO:0030551: cyclic nucleotide binding1.72E-02
85GO:0046933: proton-transporting ATP synthase activity, rotational mechanism1.81E-02
86GO:0005506: iron ion binding2.25E-02
87GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.31E-02
88GO:0008194: UDP-glycosyltransferase activity2.44E-02
89GO:0016887: ATPase activity2.58E-02
90GO:0009931: calcium-dependent protein serine/threonine kinase activity2.95E-02
91GO:0030247: polysaccharide binding3.07E-02
92GO:0015238: drug transmembrane transporter activity3.42E-02
93GO:0004222: metalloendopeptidase activity3.54E-02
94GO:0030145: manganese ion binding3.66E-02
95GO:0050660: flavin adenine dinucleotide binding3.89E-02
96GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors3.91E-02
97GO:0003746: translation elongation factor activity3.91E-02
98GO:0003993: acid phosphatase activity4.03E-02
99GO:0000149: SNARE binding4.16E-02
100GO:0004497: monooxygenase activity4.17E-02
101GO:0050661: NADP binding4.29E-02
102GO:0061630: ubiquitin protein ligase activity4.38E-02
103GO:0020037: heme binding4.48E-02
104GO:0005484: SNAP receptor activity4.68E-02
105GO:0019825: oxygen binding4.71E-02
106GO:0051537: 2 iron, 2 sulfur cluster binding4.94E-02
RankGO TermAdjusted P value
1GO:0019822: P4 peroxisome0.00E+00
2GO:0005886: plasma membrane1.79E-06
3GO:0030134: ER to Golgi transport vesicle2.14E-06
4GO:0005783: endoplasmic reticulum5.77E-06
5GO:0000502: proteasome complex1.25E-05
6GO:0005829: cytosol4.20E-05
7GO:0005839: proteasome core complex7.11E-05
8GO:0045273: respiratory chain complex II1.82E-04
9GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)1.82E-04
10GO:0032783: ELL-EAF complex2.13E-04
11GO:0019773: proteasome core complex, alpha-subunit complex2.25E-04
12GO:0005789: endoplasmic reticulum membrane3.94E-04
13GO:0000015: phosphopyruvate hydratase complex4.76E-04
14GO:0005901: caveola4.76E-04
15GO:0005782: peroxisomal matrix7.74E-04
16GO:0005773: vacuole1.07E-03
17GO:0070062: extracellular exosome1.10E-03
18GO:0030658: transport vesicle membrane1.10E-03
19GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)1.47E-03
20GO:0030660: Golgi-associated vesicle membrane1.47E-03
21GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane1.47E-03
22GO:0005746: mitochondrial respiratory chain1.87E-03
23GO:0000164: protein phosphatase type 1 complex1.87E-03
24GO:0032580: Golgi cisterna membrane2.58E-03
25GO:0031597: cytosolic proteasome complex2.77E-03
26GO:0005801: cis-Golgi network2.77E-03
27GO:0005774: vacuolar membrane2.82E-03
28GO:0031595: nuclear proteasome complex3.26E-03
29GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane3.78E-03
30GO:0008540: proteasome regulatory particle, base subcomplex5.50E-03
31GO:0016020: membrane6.07E-03
32GO:0005740: mitochondrial envelope6.12E-03
33GO:0005765: lysosomal membrane6.77E-03
34GO:0008541: proteasome regulatory particle, lid subcomplex6.77E-03
35GO:0022626: cytosolic ribosome7.47E-03
36GO:0016021: integral component of membrane8.56E-03
37GO:0005750: mitochondrial respiratory chain complex III8.84E-03
38GO:0005753: mitochondrial proton-transporting ATP synthase complex9.58E-03
39GO:0030176: integral component of endoplasmic reticulum membrane9.58E-03
40GO:0022625: cytosolic large ribosomal subunit9.64E-03
41GO:0005758: mitochondrial intermembrane space1.11E-02
42GO:0005741: mitochondrial outer membrane1.27E-02
43GO:0005759: mitochondrial matrix1.98E-02
44GO:0009504: cell plate2.00E-02
45GO:0005887: integral component of plasma membrane2.18E-02
46GO:0000145: exocyst2.20E-02
47GO:0005794: Golgi apparatus2.77E-02
48GO:0000151: ubiquitin ligase complex3.30E-02
49GO:0009507: chloroplast3.45E-02
50GO:0005777: peroxisome3.62E-02
51GO:0005819: spindle4.16E-02
52GO:0031201: SNARE complex4.41E-02
53GO:0031902: late endosome membrane4.41E-02
Gene type



Gene DE type