co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G05910

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0033494: ferulate metabolic process	0.00E+00
2	GO:0006066: alcohol metabolic process	0.00E+00
3	GO:0045176: apical protein localization	0.00E+00
4	GO:0042493: response to drug	0.00E+00
5	GO:0046620: regulation of organ growth	3.11E-06
6	GO:0009926: auxin polar transport	5.25E-06
7	GO:0010411: xyloglucan metabolic process	2.80E-05
8	GO:0006833: water transport	4.13E-05
9	GO:0005975: carbohydrate metabolic process	8.02E-05
10	GO:0009416: response to light stimulus	8.25E-05
11	GO:0042546: cell wall biogenesis	9.46E-05
12	GO:0042335: cuticle development	1.25E-04
13	GO:0034337: RNA folding	2.06E-04
14	GO:0046520: sphingoid biosynthetic process	2.06E-04
15	GO:0070509: calcium ion import	2.06E-04
16	GO:0007263: nitric oxide mediated signal transduction	2.06E-04
17	GO:0000481: maturation of 5S rRNA	2.06E-04
18	GO:0033481: galacturonate biosynthetic process	2.06E-04
19	GO:0042371: vitamin K biosynthetic process	2.06E-04
20	GO:0048829: root cap development	3.65E-04
21	GO:0000038: very long-chain fatty acid metabolic process	4.23E-04
22	GO:0009773: photosynthetic electron transport in photosystem I	4.23E-04
23	GO:0010024: phytochromobilin biosynthetic process	4.62E-04
24	GO:0010115: regulation of abscisic acid biosynthetic process	4.62E-04
25	GO:0001736: establishment of planar polarity	4.62E-04
26	GO:0071555: cell wall organization	4.80E-04
27	GO:0009725: response to hormone	5.50E-04
28	GO:0006006: glucose metabolic process	5.50E-04
29	GO:0015714: phosphoenolpyruvate transport	7.52E-04
30	GO:0006788: heme oxidation	7.52E-04
31	GO:0015840: urea transport	7.52E-04
32	GO:0003333: amino acid transmembrane transport	1.02E-03
33	GO:0006166: purine ribonucleoside salvage	1.07E-03
34	GO:0051639: actin filament network formation	1.07E-03
35	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.07E-03
36	GO:0009650: UV protection	1.07E-03
37	GO:0006168: adenine salvage	1.07E-03
38	GO:0006810: transport	1.12E-03
39	GO:0006857: oligopeptide transport	1.30E-03
40	GO:0015976: carbon utilization	1.43E-03
41	GO:0051764: actin crosslink formation	1.43E-03
42	GO:0006183: GTP biosynthetic process	1.43E-03
43	GO:2000122: negative regulation of stomatal complex development	1.43E-03
44	GO:0031122: cytoplasmic microtubule organization	1.43E-03
45	GO:0015713: phosphoglycerate transport	1.43E-03
46	GO:0010037: response to carbon dioxide	1.43E-03
47	GO:0034220: ion transmembrane transport	1.54E-03
48	GO:0009414: response to water deprivation	1.68E-03
49	GO:0044209: AMP salvage	1.81E-03
50	GO:0009733: response to auxin	2.22E-03
51	GO:0006751: glutathione catabolic process	2.24E-03
52	GO:0048827: phyllome development	2.24E-03
53	GO:0009913: epidermal cell differentiation	2.24E-03
54	GO:0018258: protein O-linked glycosylation via hydroxyproline	2.24E-03
55	GO:0000741: karyogamy	2.24E-03
56	GO:0035435: phosphate ion transmembrane transport	2.24E-03
57	GO:0006596: polyamine biosynthetic process	2.24E-03
58	GO:0006561: proline biosynthetic process	2.24E-03
59	GO:0048759: xylem vessel member cell differentiation	2.24E-03
60	GO:0010405: arabinogalactan protein metabolic process	2.24E-03
61	GO:0080086: stamen filament development	2.69E-03
62	GO:0042372: phylloquinone biosynthetic process	2.69E-03
63	GO:0009612: response to mechanical stimulus	2.69E-03
64	GO:0006694: steroid biosynthetic process	2.69E-03
65	GO:0009610: response to symbiotic fungus	3.16E-03
66	GO:0030497: fatty acid elongation	3.16E-03
67	GO:0050829: defense response to Gram-negative bacterium	3.16E-03
68	GO:1900057: positive regulation of leaf senescence	3.16E-03
69	GO:0009645: response to low light intensity stimulus	3.16E-03
70	GO:0010444: guard mother cell differentiation	3.16E-03
71	GO:0006633: fatty acid biosynthetic process	3.30E-03
72	GO:0008610: lipid biosynthetic process	3.67E-03
73	GO:0030091: protein repair	3.67E-03
74	GO:0032508: DNA duplex unwinding	3.67E-03
75	GO:0009932: cell tip growth	4.20E-03
76	GO:0009827: plant-type cell wall modification	4.20E-03
77	GO:0009808: lignin metabolic process	4.20E-03
78	GO:0009834: plant-type secondary cell wall biogenesis	4.21E-03
79	GO:0006865: amino acid transport	4.62E-03
80	GO:0009051: pentose-phosphate shunt, oxidative branch	4.75E-03
81	GO:0009734: auxin-activated signaling pathway	5.24E-03
82	GO:0010205: photoinhibition	5.32E-03
83	GO:0009638: phototropism	5.32E-03
84	GO:0019538: protein metabolic process	5.93E-03
85	GO:0009688: abscisic acid biosynthetic process	5.93E-03
86	GO:0043069: negative regulation of programmed cell death	5.93E-03
87	GO:0009826: unidimensional cell growth	6.17E-03
88	GO:1903507: negative regulation of nucleic acid-templated transcription	6.55E-03
89	GO:0009750: response to fructose	6.55E-03
90	GO:0048765: root hair cell differentiation	6.55E-03
91	GO:0010628: positive regulation of gene expression	7.87E-03
92	GO:0010229: inflorescence development	7.87E-03
93	GO:0010540: basipetal auxin transport	8.56E-03
94	GO:0010143: cutin biosynthetic process	8.56E-03
95	GO:0019253: reductive pentose-phosphate cycle	8.56E-03
96	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	8.89E-03
97	GO:0009225: nucleotide-sugar metabolic process	9.27E-03
98	GO:0019762: glucosinolate catabolic process	1.00E-02
99	GO:0010025: wax biosynthetic process	1.00E-02
100	GO:0006636: unsaturated fatty acid biosynthetic process	1.00E-02
101	GO:0055085: transmembrane transport	1.07E-02
102	GO:0009409: response to cold	1.07E-02
103	GO:0006487: protein N-linked glycosylation	1.08E-02
104	GO:0000027: ribosomal large subunit assembly	1.08E-02
105	GO:0051017: actin filament bundle assembly	1.08E-02
106	GO:0005992: trehalose biosynthetic process	1.08E-02
107	GO:0007017: microtubule-based process	1.15E-02
108	GO:0006869: lipid transport	1.21E-02
109	GO:0048511: rhythmic process	1.23E-02
110	GO:0031408: oxylipin biosynthetic process	1.23E-02
111	GO:0016998: cell wall macromolecule catabolic process	1.23E-02
112	GO:0055114: oxidation-reduction process	1.24E-02
113	GO:0030245: cellulose catabolic process	1.32E-02
114	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.32E-02
115	GO:0016042: lipid catabolic process	1.35E-02
116	GO:0009411: response to UV	1.40E-02
117	GO:0006284: base-excision repair	1.48E-02
118	GO:0019722: calcium-mediated signaling	1.48E-02
119	GO:0042127: regulation of cell proliferation	1.48E-02
120	GO:0042391: regulation of membrane potential	1.66E-02
121	GO:0010087: phloem or xylem histogenesis	1.66E-02
122	GO:0045489: pectin biosynthetic process	1.75E-02
123	GO:0009958: positive gravitropism	1.75E-02
124	GO:0010197: polar nucleus fusion	1.75E-02
125	GO:0010182: sugar mediated signaling pathway	1.75E-02
126	GO:0042752: regulation of circadian rhythm	1.84E-02
127	GO:0048825: cotyledon development	1.94E-02
128	GO:0016132: brassinosteroid biosynthetic process	2.03E-02
129	GO:0071554: cell wall organization or biogenesis	2.03E-02
130	GO:0010583: response to cyclopentenone	2.13E-02
131	GO:1901657: glycosyl compound metabolic process	2.23E-02
132	GO:0007267: cell-cell signaling	2.43E-02
133	GO:0016126: sterol biosynthetic process	2.64E-02
134	GO:0009911: positive regulation of flower development	2.64E-02
135	GO:0042128: nitrate assimilation	2.86E-02
136	GO:0016311: dephosphorylation	3.08E-02
137	GO:0030244: cellulose biosynthetic process	3.19E-02
138	GO:0018298: protein-chromophore linkage	3.19E-02
139	GO:0042254: ribosome biogenesis	3.28E-02
140	GO:0010311: lateral root formation	3.31E-02
141	GO:0009407: toxin catabolic process	3.42E-02
142	GO:0010119: regulation of stomatal movement	3.54E-02
143	GO:0009867: jasmonic acid mediated signaling pathway	3.78E-02
144	GO:0080167: response to karrikin	3.98E-02
145	GO:0006631: fatty acid metabolic process	4.27E-02
146	GO:0009744: response to sucrose	4.52E-02
147	GO:0009640: photomorphogenesis	4.52E-02
148	GO:0015979: photosynthesis	4.54E-02
149	GO:0009644: response to high light intensity	4.78E-02
150	GO:0008643: carbohydrate transport	4.78E-02
151	GO:0009636: response to toxic substance	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0050614: delta24-sterol reductase activity	0.00E+00
2	GO:0005222: intracellular cAMP activated cation channel activity	0.00E+00
3	GO:0046577: long-chain-alcohol oxidase activity	0.00E+00
4	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
5	GO:0010487: thermospermine synthase activity	0.00E+00
6	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
7	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
8	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
9	GO:0019146: arabinose-5-phosphate isomerase activity	0.00E+00
10	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	3.64E-06
11	GO:0016762: xyloglucan:xyloglucosyl transferase activity	9.24E-06
12	GO:0004565: beta-galactosidase activity	2.33E-05
13	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.80E-05
14	GO:0010328: auxin influx transmembrane transporter activity	3.11E-05
15	GO:0004871: signal transducer activity	8.26E-05
16	GO:0000170: sphingosine hydroxylase activity	2.06E-04
17	GO:0030794: (S)-coclaurine-N-methyltransferase activity	2.06E-04
18	GO:0080132: fatty acid alpha-hydroxylase activity	2.06E-04
19	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	2.06E-04
20	GO:0008568: microtubule-severing ATPase activity	2.06E-04
21	GO:0015200: methylammonium transmembrane transporter activity	2.06E-04
22	GO:0016768: spermine synthase activity	2.06E-04
23	GO:0004328: formamidase activity	2.06E-04
24	GO:0005221: intracellular cyclic nucleotide activated cation channel activity	2.06E-04
25	GO:0015250: water channel activity	3.13E-04
26	GO:0003839: gamma-glutamylcyclotransferase activity	4.62E-04
27	GO:0003938: IMP dehydrogenase activity	4.62E-04
28	GO:0042284: sphingolipid delta-4 desaturase activity	4.62E-04
29	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	4.62E-04
30	GO:0003993: acid phosphatase activity	6.35E-04
31	GO:0050734: hydroxycinnamoyltransferase activity	7.52E-04
32	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	7.52E-04
33	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	7.70E-04
34	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	7.70E-04
35	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	7.70E-04
36	GO:0005528: FK506 binding	8.52E-04
37	GO:0015293: symporter activity	9.53E-04
38	GO:0001872: (1->3)-beta-D-glucan binding	1.07E-03
39	GO:0003999: adenine phosphoribosyltransferase activity	1.07E-03
40	GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity	1.07E-03
41	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	1.07E-03
42	GO:0010011: auxin binding	1.43E-03
43	GO:0004345: glucose-6-phosphate dehydrogenase activity	1.43E-03
44	GO:0052793: pectin acetylesterase activity	1.43E-03
45	GO:0004506: squalene monooxygenase activity	1.43E-03
46	GO:0050378: UDP-glucuronate 4-epimerase activity	1.43E-03
47	GO:0004392: heme oxygenase (decyclizing) activity	1.43E-03
48	GO:0015204: urea transmembrane transporter activity	1.43E-03
49	GO:0015120: phosphoglycerate transmembrane transporter activity	1.43E-03
50	GO:0008725: DNA-3-methyladenine glycosylase activity	1.81E-03
51	GO:0009922: fatty acid elongase activity	1.81E-03
52	GO:0005215: transporter activity	2.15E-03
53	GO:1990714: hydroxyproline O-galactosyltransferase activity	2.24E-03
54	GO:0004629: phospholipase C activity	2.24E-03
55	GO:0035673: oligopeptide transmembrane transporter activity	2.24E-03
56	GO:0016208: AMP binding	2.24E-03
57	GO:0008519: ammonium transmembrane transporter activity	2.24E-03
58	GO:0016722: oxidoreductase activity, oxidizing metal ions	2.62E-03
59	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.69E-03
60	GO:0051753: mannan synthase activity	2.69E-03
61	GO:0005261: cation channel activity	2.69E-03
62	GO:0004435: phosphatidylinositol phospholipase C activity	2.69E-03
63	GO:0005242: inward rectifier potassium channel activity	2.69E-03
64	GO:0016413: O-acetyltransferase activity	2.77E-03
65	GO:0102483: scopolin beta-glucosidase activity	3.45E-03
66	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	4.20E-03
67	GO:0008422: beta-glucosidase activity	5.28E-03
68	GO:0050661: NADP binding	5.51E-03
69	GO:0004805: trehalose-phosphatase activity	5.93E-03
70	GO:0008794: arsenate reductase (glutaredoxin) activity	6.55E-03
71	GO:0016788: hydrolase activity, acting on ester bonds	6.64E-03
72	GO:0015198: oligopeptide transporter activity	7.20E-03
73	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	7.27E-03
74	GO:0003824: catalytic activity	7.41E-03
75	GO:0050660: flavin adenine dinucleotide binding	7.80E-03
76	GO:0005262: calcium channel activity	7.87E-03
77	GO:0015114: phosphate ion transmembrane transporter activity	7.87E-03
78	GO:0008081: phosphoric diester hydrolase activity	7.87E-03
79	GO:0004022: alcohol dehydrogenase (NAD) activity	7.87E-03
80	GO:0004089: carbonate dehydratase activity	7.87E-03
81	GO:0030552: cAMP binding	9.27E-03
82	GO:0030553: cGMP binding	9.27E-03
83	GO:0015171: amino acid transmembrane transporter activity	9.31E-03
84	GO:0052689: carboxylic ester hydrolase activity	9.68E-03
85	GO:0016491: oxidoreductase activity	1.02E-02
86	GO:0003714: transcription corepressor activity	1.08E-02
87	GO:0022857: transmembrane transporter activity	1.13E-02
88	GO:0043424: protein histidine kinase binding	1.15E-02
89	GO:0005216: ion channel activity	1.15E-02
90	GO:0030246: carbohydrate binding	1.17E-02
91	GO:0004722: protein serine/threonine phosphatase activity	1.21E-02
92	GO:0016746: transferase activity, transferring acyl groups	1.23E-02
93	GO:0022891: substrate-specific transmembrane transporter activity	1.40E-02
94	GO:0008810: cellulase activity	1.40E-02
95	GO:0008514: organic anion transmembrane transporter activity	1.48E-02
96	GO:0030551: cyclic nucleotide binding	1.66E-02
97	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.94E-02
98	GO:0004872: receptor activity	1.94E-02
99	GO:0008289: lipid binding	2.12E-02
100	GO:0051015: actin filament binding	2.23E-02
101	GO:0005200: structural constituent of cytoskeleton	2.43E-02
102	GO:0042802: identical protein binding	2.64E-02
103	GO:0016168: chlorophyll binding	2.75E-02
104	GO:0008375: acetylglucosaminyltransferase activity	2.86E-02
105	GO:0030247: polysaccharide binding	2.97E-02
106	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	3.42E-02
107	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.54E-02
108	GO:0004364: glutathione transferase activity	4.40E-02
109	GO:0005516: calmodulin binding	4.76E-02
110	GO:0051537: 2 iron, 2 sulfur cluster binding	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0048046: apoplast	8.26E-08
2	GO:0005886: plasma membrane	3.17E-07
3	GO:0009505: plant-type cell wall	6.60E-06
4	GO:0005576: extracellular region	8.03E-05
5	GO:0016020: membrane	1.15E-04
6	GO:0005618: cell wall	1.20E-04
7	GO:0031225: anchored component of membrane	2.60E-04
8	GO:0046658: anchored component of plasma membrane	9.84E-04
9	GO:0015630: microtubule cytoskeleton	1.07E-03
10	GO:0032432: actin filament bundle	1.07E-03
11	GO:0005887: integral component of plasma membrane	1.14E-03
12	GO:0016021: integral component of membrane	1.40E-03
13	GO:0009506: plasmodesma	2.05E-03
14	GO:0042807: central vacuole	3.16E-03
15	GO:0009986: cell surface	3.16E-03
16	GO:0000326: protein storage vacuole	4.20E-03
17	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.75E-03
18	GO:0008180: COP9 signalosome	4.75E-03
19	GO:0009507: chloroplast	6.47E-03
20	GO:0005884: actin filament	6.55E-03
21	GO:0005773: vacuole	6.91E-03
22	GO:0032040: small-subunit processome	7.20E-03
23	GO:0031969: chloroplast membrane	8.52E-03
24	GO:0009543: chloroplast thylakoid lumen	1.50E-02
25	GO:0005770: late endosome	1.75E-02
26	GO:0009523: photosystem II	1.94E-02
27	GO:0032580: Golgi cisterna membrane	2.33E-02
28	GO:0005778: peroxisomal membrane	2.43E-02
29	GO:0005794: Golgi apparatus	2.46E-02
30	GO:0019005: SCF ubiquitin ligase complex	3.19E-02
31	GO:0005777: peroxisome	3.42E-02
32	GO:0009941: chloroplast envelope	3.51E-02
33	GO:0005789: endoplasmic reticulum membrane	4.00E-02