co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G05180

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0060966: regulation of gene silencing by RNA	0.00E+00
2	GO:1905499: trichome papilla formation	0.00E+00
3	GO:0070829: heterochromatin maintenance	0.00E+00
4	GO:0071360: cellular response to exogenous dsRNA	0.00E+00
5	GO:1900370: positive regulation of RNA interference	0.00E+00
6	GO:0035563: positive regulation of chromatin binding	0.00E+00
7	GO:0090391: granum assembly	9.92E-07
8	GO:0042335: cuticle development	1.15E-05
9	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.28E-05
10	GO:0010196: nonphotochemical quenching	2.32E-05
11	GO:0042759: long-chain fatty acid biosynthetic process	6.74E-05
12	GO:0042371: vitamin K biosynthetic process	6.74E-05
13	GO:0071588: hydrogen peroxide mediated signaling pathway	6.74E-05
14	GO:1900368: regulation of RNA interference	6.74E-05
15	GO:0009735: response to cytokinin	8.72E-05
16	GO:1900111: positive regulation of histone H3-K9 dimethylation	1.62E-04
17	GO:0009736: cytokinin-activated signaling pathway	1.66E-04
18	GO:0010025: wax biosynthetic process	1.68E-04
19	GO:0006869: lipid transport	2.47E-04
20	GO:0032776: DNA methylation on cytosine	2.75E-04
21	GO:0060968: regulation of gene silencing	2.75E-04
22	GO:0009062: fatty acid catabolic process	2.75E-04
23	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.77E-04
24	GO:0016042: lipid catabolic process	2.85E-04
25	GO:0060964: regulation of gene silencing by miRNA	3.98E-04
26	GO:0006166: purine ribonucleoside salvage	3.98E-04
27	GO:0006168: adenine salvage	3.98E-04
28	GO:0009956: radial pattern formation	5.32E-04
29	GO:0045727: positive regulation of translation	5.32E-04
30	GO:0042991: transcription factor import into nucleus	5.32E-04
31	GO:0009828: plant-type cell wall loosening	5.67E-04
32	GO:0010027: thylakoid membrane organization	6.71E-04
33	GO:0006564: L-serine biosynthetic process	6.73E-04
34	GO:0044209: AMP salvage	6.73E-04
35	GO:0006665: sphingolipid metabolic process	6.73E-04
36	GO:0010405: arabinogalactan protein metabolic process	8.23E-04
37	GO:0018258: protein O-linked glycosylation via hydroxyproline	8.23E-04
38	GO:0035435: phosphate ion transmembrane transport	8.23E-04
39	GO:0009913: epidermal cell differentiation	8.23E-04
40	GO:0009826: unidimensional cell growth	8.97E-04
41	GO:0000160: phosphorelay signal transduction system	9.07E-04
42	GO:0010019: chloroplast-nucleus signaling pathway	9.79E-04
43	GO:0006694: steroid biosynthetic process	9.79E-04
44	GO:0007568: aging	9.93E-04
45	GO:0009395: phospholipid catabolic process	1.14E-03
46	GO:0080167: response to karrikin	1.22E-03
47	GO:0031540: regulation of anthocyanin biosynthetic process	1.32E-03
48	GO:0008610: lipid biosynthetic process	1.32E-03
49	GO:0032544: plastid translation	1.50E-03
50	GO:0009808: lignin metabolic process	1.50E-03
51	GO:0090305: nucleic acid phosphodiester bond hydrolysis	1.69E-03
52	GO:0034765: regulation of ion transmembrane transport	1.69E-03
53	GO:0009664: plant-type cell wall organization	1.72E-03
54	GO:0042761: very long-chain fatty acid biosynthetic process	1.89E-03
55	GO:0030422: production of siRNA involved in RNA interference	2.10E-03
56	GO:0006949: syncytium formation	2.10E-03
57	GO:0010015: root morphogenesis	2.31E-03
58	GO:0000038: very long-chain fatty acid metabolic process	2.31E-03
59	GO:0016024: CDP-diacylglycerol biosynthetic process	2.53E-03
60	GO:0010229: inflorescence development	2.76E-03
61	GO:0009725: response to hormone	2.76E-03
62	GO:0048467: gynoecium development	2.99E-03
63	GO:0010143: cutin biosynthetic process	2.99E-03
64	GO:0009933: meristem structural organization	2.99E-03
65	GO:0080188: RNA-directed DNA methylation	3.23E-03
66	GO:0042023: DNA endoreduplication	3.48E-03
67	GO:0042744: hydrogen peroxide catabolic process	3.70E-03
68	GO:0007010: cytoskeleton organization	3.73E-03
69	GO:0005975: carbohydrate metabolic process	3.93E-03
70	GO:0019953: sexual reproduction	3.99E-03
71	GO:0009695: jasmonic acid biosynthetic process	3.99E-03
72	GO:0016998: cell wall macromolecule catabolic process	4.26E-03
73	GO:0006306: DNA methylation	4.26E-03
74	GO:0031408: oxylipin biosynthetic process	4.26E-03
75	GO:0007623: circadian rhythm	4.48E-03
76	GO:0030245: cellulose catabolic process	4.53E-03
77	GO:0010017: red or far-red light signaling pathway	4.53E-03
78	GO:0010091: trichome branching	5.09E-03
79	GO:0080022: primary root development	5.68E-03
80	GO:0042391: regulation of membrane potential	5.68E-03
81	GO:0010305: leaf vascular tissue pattern formation	5.98E-03
82	GO:0042752: regulation of circadian rhythm	6.28E-03
83	GO:0048825: cotyledon development	6.60E-03
84	GO:0006635: fatty acid beta-oxidation	6.91E-03
85	GO:0016132: brassinosteroid biosynthetic process	6.91E-03
86	GO:0000302: response to reactive oxygen species	6.91E-03
87	GO:0010252: auxin homeostasis	7.90E-03
88	GO:0071805: potassium ion transmembrane transport	8.24E-03
89	GO:0010411: xyloglucan metabolic process	1.00E-02
90	GO:0071555: cell wall organization	1.01E-02
91	GO:0009834: plant-type secondary cell wall biogenesis	1.15E-02
92	GO:0009631: cold acclimation	1.19E-02
93	GO:0034599: cellular response to oxidative stress	1.31E-02
94	GO:0006468: protein phosphorylation	1.48E-02
95	GO:0010114: response to red light	1.52E-02
96	GO:0009744: response to sucrose	1.52E-02
97	GO:0008283: cell proliferation	1.52E-02
98	GO:0042546: cell wall biogenesis	1.57E-02
99	GO:0008643: carbohydrate transport	1.61E-02
100	GO:0009809: lignin biosynthetic process	1.88E-02
101	GO:0006364: rRNA processing	1.88E-02
102	GO:0009416: response to light stimulus	2.26E-02
103	GO:0045893: positive regulation of transcription, DNA-templated	2.59E-02
104	GO:0006633: fatty acid biosynthetic process	3.33E-02
105	GO:0009451: RNA modification	3.63E-02
106	GO:0006979: response to oxidative stress	4.58E-02
107	GO:0009658: chloroplast organization	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
2	GO:0050614: delta24-sterol reductase activity	0.00E+00
3	GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity	0.00E+00
4	GO:0052689: carboxylic ester hydrolase activity	7.59E-07
5	GO:0016788: hydrolase activity, acting on ester bonds	7.27E-06
6	GO:0008809: carnitine racemase activity	6.74E-05
7	GO:0004560: alpha-L-fucosidase activity	6.74E-05
8	GO:0004321: fatty-acyl-CoA synthase activity	6.74E-05
9	GO:0004565: beta-galactosidase activity	1.15E-04
10	GO:0004617: phosphoglycerate dehydrogenase activity	1.62E-04
11	GO:0016746: transferase activity, transferring acyl groups	2.81E-04
12	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	3.98E-04
13	GO:0004165: dodecenoyl-CoA delta-isomerase activity	3.98E-04
14	GO:0001872: (1->3)-beta-D-glucan binding	3.98E-04
15	GO:0003999: adenine phosphoribosyltransferase activity	3.98E-04
16	GO:0008289: lipid binding	5.01E-04
17	GO:0052793: pectin acetylesterase activity	5.32E-04
18	GO:0000156: phosphorelay response regulator activity	5.33E-04
19	GO:0009922: fatty acid elongase activity	6.73E-04
20	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	8.23E-04
21	GO:1990714: hydroxyproline O-galactosyltransferase activity	8.23E-04
22	GO:0004130: cytochrome-c peroxidase activity	8.23E-04
23	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	8.23E-04
24	GO:0016688: L-ascorbate peroxidase activity	8.23E-04
25	GO:0005242: inward rectifier potassium channel activity	9.79E-04
26	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.10E-03
27	GO:0052747: sinapyl alcohol dehydrogenase activity	1.32E-03
28	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	1.69E-03
29	GO:0016207: 4-coumarate-CoA ligase activity	1.69E-03
30	GO:0004674: protein serine/threonine kinase activity	1.90E-03
31	GO:0045551: cinnamyl-alcohol dehydrogenase activity	2.53E-03
32	GO:0015114: phosphate ion transmembrane transporter activity	2.76E-03
33	GO:0008266: poly(U) RNA binding	2.99E-03
34	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	3.48E-03
35	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	3.48E-03
36	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	3.48E-03
37	GO:0005528: FK506 binding	3.73E-03
38	GO:0004672: protein kinase activity	3.74E-03
39	GO:0008810: cellulase activity	4.81E-03
40	GO:0005249: voltage-gated potassium channel activity	5.68E-03
41	GO:0042802: identical protein binding	5.68E-03
42	GO:0030551: cyclic nucleotide binding	5.68E-03
43	GO:0050662: coenzyme binding	6.28E-03
44	GO:0004872: receptor activity	6.60E-03
45	GO:0016762: xyloglucan:xyloglucosyl transferase activity	6.91E-03
46	GO:0004518: nuclease activity	7.24E-03
47	GO:0016791: phosphatase activity	7.90E-03
48	GO:0016722: oxidoreductase activity, oxidizing metal ions	8.24E-03
49	GO:0016597: amino acid binding	8.59E-03
50	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.00E-02
51	GO:0030247: polysaccharide binding	1.00E-02
52	GO:0003824: catalytic activity	1.13E-02
53	GO:0030145: manganese ion binding	1.19E-02
54	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.19E-02
55	GO:0003993: acid phosphatase activity	1.31E-02
56	GO:0009055: electron carrier activity	1.36E-02
57	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.70E-02
58	GO:0051287: NAD binding	1.74E-02
59	GO:0016298: lipase activity	1.93E-02
60	GO:0045735: nutrient reservoir activity	2.12E-02
61	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	2.17E-02
62	GO:0016874: ligase activity	2.31E-02
63	GO:0030599: pectinesterase activity	2.31E-02
64	GO:0004386: helicase activity	2.57E-02
65	GO:0016758: transferase activity, transferring hexosyl groups	2.78E-02
66	GO:0019843: rRNA binding	2.84E-02
67	GO:0030246: carbohydrate binding	3.04E-02
68	GO:0005507: copper ion binding	3.21E-02
69	GO:0008017: microtubule binding	3.68E-02
70	GO:0004601: peroxidase activity	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0090577: RNA polymerase IV transcription factor complex	0.00E+00
2	GO:0031618: nuclear pericentric heterochromatin	0.00E+00
3	GO:0009515: granal stacked thylakoid	0.00E+00
4	GO:0048046: apoplast	5.00E-09
5	GO:0009505: plant-type cell wall	7.83E-08
6	GO:0046658: anchored component of plasma membrane	1.76E-07
7	GO:0005576: extracellular region	1.01E-06
8	GO:0031225: anchored component of membrane	2.75E-06
9	GO:0009923: fatty acid elongase complex	6.74E-05
10	GO:0005618: cell wall	3.11E-04
11	GO:0009534: chloroplast thylakoid	9.60E-04
12	GO:0005886: plasma membrane	1.22E-03
13	GO:0005578: proteinaceous extracellular matrix	2.76E-03
14	GO:0000419: DNA-directed RNA polymerase V complex	3.48E-03
15	GO:0009506: plasmodesma	4.44E-03
16	GO:0009579: thylakoid	5.16E-03
17	GO:0005783: endoplasmic reticulum	1.25E-02
18	GO:0005789: endoplasmic reticulum membrane	1.72E-02
19	GO:0005773: vacuole	2.59E-02
20	GO:0005777: peroxisome	2.59E-02
21	GO:0010287: plastoglobule	2.73E-02
22	GO:0009535: chloroplast thylakoid membrane	2.79E-02
23	GO:0009543: chloroplast thylakoid lumen	2.84E-02
24	GO:0016020: membrane	3.63E-02