GO Enrichment Analysis of Co-expressed Genes with
AT3G04940
Rank | GO Term | Adjusted P value |
---|---|---|
1 | GO:0070272: proton-transporting ATP synthase complex biogenesis | 0.00E+00 |
2 | GO:0051503: adenine nucleotide transport | 0.00E+00 |
3 | GO:0006437: tyrosyl-tRNA aminoacylation | 0.00E+00 |
4 | GO:0006671: phytosphingosine metabolic process | 0.00E+00 |
5 | GO:0010270: photosystem II oxygen evolving complex assembly | 9.95E-07 |
6 | GO:0009773: photosynthetic electron transport in photosystem I | 2.49E-04 |
7 | GO:0006695: cholesterol biosynthetic process | 3.25E-04 |
8 | GO:0006650: glycerophospholipid metabolic process | 3.25E-04 |
9 | GO:1900111: positive regulation of histone H3-K9 dimethylation | 3.25E-04 |
10 | GO:0048587: regulation of short-day photoperiodism, flowering | 3.25E-04 |
11 | GO:0043039: tRNA aminoacylation | 3.25E-04 |
12 | GO:0006810: transport | 3.36E-04 |
13 | GO:0010581: regulation of starch biosynthetic process | 5.33E-04 |
14 | GO:0032922: circadian regulation of gene expression | 5.33E-04 |
15 | GO:0006696: ergosterol biosynthetic process | 5.33E-04 |
16 | GO:0006760: folic acid-containing compound metabolic process | 5.33E-04 |
17 | GO:0046902: regulation of mitochondrial membrane permeability | 7.63E-04 |
18 | GO:0009855: determination of bilateral symmetry | 7.63E-04 |
19 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 7.63E-04 |
20 | GO:0016117: carotenoid biosynthetic process | 8.61E-04 |
21 | GO:0006085: acetyl-CoA biosynthetic process | 1.01E-03 |
22 | GO:2000122: negative regulation of stomatal complex development | 1.01E-03 |
23 | GO:0006546: glycine catabolic process | 1.01E-03 |
24 | GO:0046656: folic acid biosynthetic process | 1.01E-03 |
25 | GO:0010037: response to carbon dioxide | 1.01E-03 |
26 | GO:0015976: carbon utilization | 1.01E-03 |
27 | GO:0009247: glycolipid biosynthetic process | 1.28E-03 |
28 | GO:0010236: plastoquinone biosynthetic process | 1.28E-03 |
29 | GO:0010583: response to cyclopentenone | 1.30E-03 |
30 | GO:0006555: methionine metabolic process | 1.57E-03 |
31 | GO:0010358: leaf shaping | 1.57E-03 |
32 | GO:0016554: cytidine to uridine editing | 1.57E-03 |
33 | GO:0006828: manganese ion transport | 1.57E-03 |
34 | GO:0010190: cytochrome b6f complex assembly | 1.57E-03 |
35 | GO:0042549: photosystem II stabilization | 1.57E-03 |
36 | GO:0009955: adaxial/abaxial pattern specification | 1.88E-03 |
37 | GO:0080060: integument development | 1.88E-03 |
38 | GO:0010014: meristem initiation | 1.88E-03 |
39 | GO:0046654: tetrahydrofolate biosynthetic process | 1.88E-03 |
40 | GO:0009854: oxidative photosynthetic carbon pathway | 1.88E-03 |
41 | GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway | 2.21E-03 |
42 | GO:0009645: response to low light intensity stimulus | 2.21E-03 |
43 | GO:0007155: cell adhesion | 2.56E-03 |
44 | GO:0009690: cytokinin metabolic process | 2.56E-03 |
45 | GO:0019375: galactolipid biosynthetic process | 2.56E-03 |
46 | GO:0045010: actin nucleation | 2.56E-03 |
47 | GO:0010119: regulation of stomatal movement | 2.61E-03 |
48 | GO:0009657: plastid organization | 2.93E-03 |
49 | GO:0019430: removal of superoxide radicals | 2.93E-03 |
50 | GO:0009932: cell tip growth | 2.93E-03 |
51 | GO:0006098: pentose-phosphate shunt | 3.31E-03 |
52 | GO:0045337: farnesyl diphosphate biosynthetic process | 3.31E-03 |
53 | GO:0033384: geranyl diphosphate biosynthetic process | 3.31E-03 |
54 | GO:0000902: cell morphogenesis | 3.31E-03 |
55 | GO:0035999: tetrahydrofolate interconversion | 3.71E-03 |
56 | GO:1900865: chloroplast RNA modification | 3.71E-03 |
57 | GO:0010380: regulation of chlorophyll biosynthetic process | 3.71E-03 |
58 | GO:0042761: very long-chain fatty acid biosynthetic process | 3.71E-03 |
59 | GO:0016573: histone acetylation | 3.71E-03 |
60 | GO:0043069: negative regulation of programmed cell death | 4.12E-03 |
61 | GO:0009409: response to cold | 4.20E-03 |
62 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 4.53E-03 |
63 | GO:0006816: calcium ion transport | 4.55E-03 |
64 | GO:0006415: translational termination | 4.55E-03 |
65 | GO:0019684: photosynthesis, light reaction | 4.55E-03 |
66 | GO:0010072: primary shoot apical meristem specification | 4.55E-03 |
67 | GO:0009089: lysine biosynthetic process via diaminopimelate | 4.55E-03 |
68 | GO:0043085: positive regulation of catalytic activity | 4.55E-03 |
69 | GO:0018119: peptidyl-cysteine S-nitrosylation | 4.55E-03 |
70 | GO:0000038: very long-chain fatty acid metabolic process | 4.55E-03 |
71 | GO:0006790: sulfur compound metabolic process | 4.99E-03 |
72 | GO:0015979: photosynthesis | 5.13E-03 |
73 | GO:0006094: gluconeogenesis | 5.45E-03 |
74 | GO:0009767: photosynthetic electron transport chain | 5.45E-03 |
75 | GO:0006096: glycolytic process | 5.85E-03 |
76 | GO:0010020: chloroplast fission | 5.92E-03 |
77 | GO:0019253: reductive pentose-phosphate cycle | 5.92E-03 |
78 | GO:0010207: photosystem II assembly | 5.92E-03 |
79 | GO:0046854: phosphatidylinositol phosphorylation | 6.41E-03 |
80 | GO:0010025: wax biosynthetic process | 6.91E-03 |
81 | GO:0006338: chromatin remodeling | 7.42E-03 |
82 | GO:0009944: polarity specification of adaxial/abaxial axis | 7.42E-03 |
83 | GO:0006418: tRNA aminoacylation for protein translation | 7.95E-03 |
84 | GO:0007017: microtubule-based process | 7.95E-03 |
85 | GO:0009768: photosynthesis, light harvesting in photosystem I | 7.95E-03 |
86 | GO:0061077: chaperone-mediated protein folding | 8.49E-03 |
87 | GO:0006730: one-carbon metabolic process | 9.05E-03 |
88 | GO:0080092: regulation of pollen tube growth | 9.05E-03 |
89 | GO:0006633: fatty acid biosynthetic process | 1.11E-02 |
90 | GO:0000226: microtubule cytoskeleton organization | 1.14E-02 |
91 | GO:0042335: cuticle development | 1.14E-02 |
92 | GO:0000271: polysaccharide biosynthetic process | 1.14E-02 |
93 | GO:0045489: pectin biosynthetic process | 1.20E-02 |
94 | GO:0009741: response to brassinosteroid | 1.20E-02 |
95 | GO:0010268: brassinosteroid homeostasis | 1.20E-02 |
96 | GO:0008654: phospholipid biosynthetic process | 1.33E-02 |
97 | GO:0016132: brassinosteroid biosynthetic process | 1.39E-02 |
98 | GO:0007264: small GTPase mediated signal transduction | 1.46E-02 |
99 | GO:0032502: developmental process | 1.46E-02 |
100 | GO:0009416: response to light stimulus | 1.47E-02 |
101 | GO:0010090: trichome morphogenesis | 1.53E-02 |
102 | GO:0016125: sterol metabolic process | 1.60E-02 |
103 | GO:0016126: sterol biosynthetic process | 1.81E-02 |
104 | GO:0001666: response to hypoxia | 1.81E-02 |
105 | GO:0010027: thylakoid membrane organization | 1.81E-02 |
106 | GO:0042128: nitrate assimilation | 1.96E-02 |
107 | GO:0009860: pollen tube growth | 2.04E-02 |
108 | GO:0009817: defense response to fungus, incompatible interaction | 2.19E-02 |
109 | GO:0018298: protein-chromophore linkage | 2.19E-02 |
110 | GO:0009853: photorespiration | 2.59E-02 |
111 | GO:0009867: jasmonic acid mediated signaling pathway | 2.59E-02 |
112 | GO:0016051: carbohydrate biosynthetic process | 2.59E-02 |
113 | GO:0006631: fatty acid metabolic process | 2.93E-02 |
114 | GO:0009644: response to high light intensity | 3.28E-02 |
115 | GO:0048364: root development | 3.61E-02 |
116 | GO:0051603: proteolysis involved in cellular protein catabolic process | 3.93E-02 |
117 | GO:0006417: regulation of translation | 4.12E-02 |
118 | GO:0048316: seed development | 4.42E-02 |
119 | GO:0048367: shoot system development | 4.42E-02 |
120 | GO:0055114: oxidation-reduction process | 4.93E-02 |
Rank | GO Term | Adjusted P value |
---|---|---|
1 | GO:0046905: phytoene synthase activity | 0.00E+00 |
2 | GO:0008887: glycerate kinase activity | 0.00E+00 |
3 | GO:0050613: delta14-sterol reductase activity | 0.00E+00 |
4 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
5 | GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity | 0.00E+00 |
6 | GO:0009974: zeinoxanthin epsilon hydroxylase activity | 0.00E+00 |
7 | GO:0005528: FK506 binding | 2.11E-05 |
8 | GO:0080132: fatty acid alpha-hydroxylase activity | 1.42E-04 |
9 | GO:0004831: tyrosine-tRNA ligase activity | 1.42E-04 |
10 | GO:0051996: squalene synthase activity | 1.42E-04 |
11 | GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity | 1.42E-04 |
12 | GO:0010012: steroid 22-alpha hydroxylase activity | 1.42E-04 |
13 | GO:0046912: transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer | 1.42E-04 |
14 | GO:0004150: dihydroneopterin aldolase activity | 3.25E-04 |
15 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 3.25E-04 |
16 | GO:0004310: farnesyl-diphosphate farnesyltransferase activity | 3.25E-04 |
17 | GO:0004618: phosphoglycerate kinase activity | 3.25E-04 |
18 | GO:0004047: aminomethyltransferase activity | 3.25E-04 |
19 | GO:0102083: 7,8-dihydromonapterin aldolase activity | 3.25E-04 |
20 | GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity | 3.25E-04 |
21 | GO:0031072: heat shock protein binding | 3.27E-04 |
22 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 5.18E-04 |
23 | GO:0017050: D-erythro-sphingosine kinase activity | 5.33E-04 |
24 | GO:0003878: ATP citrate synthase activity | 7.63E-04 |
25 | GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | 7.63E-04 |
26 | GO:0035250: UDP-galactosyltransferase activity | 7.63E-04 |
27 | GO:0016149: translation release factor activity, codon specific | 7.63E-04 |
28 | GO:0004045: aminoacyl-tRNA hydrolase activity | 1.01E-03 |
29 | GO:0004659: prenyltransferase activity | 1.01E-03 |
30 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 1.01E-03 |
31 | GO:0008374: O-acyltransferase activity | 1.28E-03 |
32 | GO:0005471: ATP:ADP antiporter activity | 1.28E-03 |
33 | GO:0004332: fructose-bisphosphate aldolase activity | 1.57E-03 |
34 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 1.88E-03 |
35 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 1.88E-03 |
36 | GO:0004143: diacylglycerol kinase activity | 2.21E-03 |
37 | GO:0035064: methylated histone binding | 2.56E-03 |
38 | GO:0003951: NAD+ kinase activity | 2.93E-03 |
39 | GO:0004337: geranyltranstransferase activity | 3.31E-03 |
40 | GO:0003747: translation release factor activity | 3.31E-03 |
41 | GO:0005384: manganese ion transmembrane transporter activity | 3.71E-03 |
42 | GO:0051537: 2 iron, 2 sulfur cluster binding | 3.98E-03 |
43 | GO:0008047: enzyme activator activity | 4.12E-03 |
44 | GO:0005198: structural molecule activity | 4.13E-03 |
45 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 4.55E-03 |
46 | GO:0004161: dimethylallyltranstransferase activity | 4.55E-03 |
47 | GO:0004089: carbonate dehydratase activity | 5.45E-03 |
48 | GO:0015095: magnesium ion transmembrane transporter activity | 5.45E-03 |
49 | GO:0102336: 3-oxo-arachidoyl-CoA synthase activity | 6.91E-03 |
50 | GO:0102337: 3-oxo-cerotoyl-CoA synthase activity | 6.91E-03 |
51 | GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity | 6.91E-03 |
52 | GO:0031409: pigment binding | 6.91E-03 |
53 | GO:0051082: unfolded protein binding | 7.04E-03 |
54 | GO:0003924: GTPase activity | 7.11E-03 |
55 | GO:0016746: transferase activity, transferring acyl groups | 7.24E-03 |
56 | GO:0004707: MAP kinase activity | 8.49E-03 |
57 | GO:0019706: protein-cysteine S-palmitoyltransferase activity | 8.49E-03 |
58 | GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity | 9.05E-03 |
59 | GO:0003756: protein disulfide isomerase activity | 1.02E-02 |
60 | GO:0004812: aminoacyl-tRNA ligase activity | 1.08E-02 |
61 | GO:0004791: thioredoxin-disulfide reductase activity | 1.26E-02 |
62 | GO:0048038: quinone binding | 1.39E-02 |
63 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.53E-02 |
64 | GO:0042802: identical protein binding | 1.55E-02 |
65 | GO:0008483: transaminase activity | 1.67E-02 |
66 | GO:0016722: oxidoreductase activity, oxidizing metal ions | 1.67E-02 |
67 | GO:0005200: structural constituent of cytoskeleton | 1.67E-02 |
68 | GO:0016168: chlorophyll binding | 1.88E-02 |
69 | GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding | 2.11E-02 |
70 | GO:0008236: serine-type peptidase activity | 2.11E-02 |
71 | GO:0052689: carboxylic ester hydrolase activity | 2.59E-02 |
72 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 2.67E-02 |
73 | GO:0005525: GTP binding | 2.76E-02 |
74 | GO:0016787: hydrolase activity | 3.01E-02 |
75 | GO:0004185: serine-type carboxypeptidase activity | 3.10E-02 |
76 | GO:0005509: calcium ion binding | 3.23E-02 |
77 | GO:0003824: catalytic activity | 4.00E-02 |
78 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 4.42E-02 |
79 | GO:0022857: transmembrane transporter activity | 4.72E-02 |
Rank | GO Term | Adjusted P value |
---|---|---|
1 | GO:0031224: intrinsic component of membrane | 0.00E+00 |
2 | GO:0009507: chloroplast | 3.89E-15 |
3 | GO:0009535: chloroplast thylakoid membrane | 6.61E-12 |
4 | GO:0009543: chloroplast thylakoid lumen | 7.14E-10 |
5 | GO:0009941: chloroplast envelope | 1.36E-09 |
6 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 2.55E-06 |
7 | GO:0009570: chloroplast stroma | 4.43E-06 |
8 | GO:0009654: photosystem II oxygen evolving complex | 2.49E-05 |
9 | GO:0031977: thylakoid lumen | 2.76E-05 |
10 | GO:0009534: chloroplast thylakoid | 3.08E-05 |
11 | GO:0019898: extrinsic component of membrane | 7.99E-05 |
12 | GO:0009782: photosystem I antenna complex | 1.42E-04 |
13 | GO:0009344: nitrite reductase complex [NAD(P)H] | 1.42E-04 |
14 | GO:0009579: thylakoid | 2.03E-04 |
15 | GO:0030095: chloroplast photosystem II | 3.70E-04 |
16 | GO:0031519: PcG protein complex | 5.33E-04 |
17 | GO:0009346: citrate lyase complex | 7.63E-04 |
18 | GO:0031209: SCAR complex | 1.57E-03 |
19 | GO:0000123: histone acetyltransferase complex | 2.21E-03 |
20 | GO:0005677: chromatin silencing complex | 2.93E-03 |
21 | GO:0045298: tubulin complex | 3.31E-03 |
22 | GO:0016324: apical plasma membrane | 4.12E-03 |
23 | GO:0031969: chloroplast membrane | 4.34E-03 |
24 | GO:0009508: plastid chromosome | 5.45E-03 |
25 | GO:0030659: cytoplasmic vesicle membrane | 5.92E-03 |
26 | GO:0030176: integral component of endoplasmic reticulum membrane | 6.41E-03 |
27 | GO:0030076: light-harvesting complex | 6.41E-03 |
28 | GO:0005875: microtubule associated complex | 6.91E-03 |
29 | GO:0042651: thylakoid membrane | 7.95E-03 |
30 | GO:0010287: plastoglobule | 8.35E-03 |
31 | GO:0009532: plastid stroma | 8.49E-03 |
32 | GO:0009523: photosystem II | 1.33E-02 |
33 | GO:0009295: nucleoid | 1.67E-02 |
34 | GO:0005778: peroxisomal membrane | 1.67E-02 |
35 | GO:0010319: stromule | 1.67E-02 |
36 | GO:0030529: intracellular ribonucleoprotein complex | 1.81E-02 |
37 | GO:0005874: microtubule | 2.27E-02 |
38 | GO:0005829: cytosol | 3.32E-02 |
39 | GO:0005856: cytoskeleton | 3.37E-02 |
40 | GO:0005773: vacuole | 4.33E-02 |
41 | GO:0009706: chloroplast inner membrane | 4.92E-02 |