co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G04910

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0051513: regulation of monopolar cell growth	3.79E-07
2	GO:0010206: photosystem II repair	9.14E-06
3	GO:0031338: regulation of vesicle fusion	2.30E-05
4	GO:0010028: xanthophyll cycle	2.30E-05
5	GO:0010541: acropetal auxin transport	5.89E-05
6	GO:0016122: xanthophyll metabolic process	5.89E-05
7	GO:0006898: receptor-mediated endocytosis	5.89E-05
8	GO:0016045: detection of bacterium	1.04E-04
9	GO:0010359: regulation of anion channel activity	1.04E-04
10	GO:0080055: low-affinity nitrate transport	1.04E-04
11	GO:0045493: xylan catabolic process	1.04E-04
12	GO:0090630: activation of GTPase activity	1.04E-04
13	GO:0010160: formation of animal organ boundary	1.04E-04
14	GO:0043481: anthocyanin accumulation in tissues in response to UV light	1.55E-04
15	GO:0015995: chlorophyll biosynthetic process	2.02E-04
16	GO:0015994: chlorophyll metabolic process	2.12E-04
17	GO:0060918: auxin transport	3.37E-04
18	GO:0009926: auxin polar transport	3.70E-04
19	GO:0009942: longitudinal axis specification	4.04E-04
20	GO:0009664: plant-type cell wall organization	4.63E-04
21	GO:0007389: pattern specification process	6.21E-04
22	GO:0009638: phototropism	7.77E-04
23	GO:1903507: negative regulation of nucleic acid-templated transcription	9.42E-04
24	GO:0009684: indoleacetic acid biosynthetic process	9.42E-04
25	GO:0010015: root morphogenesis	9.42E-04
26	GO:0052544: defense response by callose deposition in cell wall	9.42E-04
27	GO:0008361: regulation of cell size	1.03E-03
28	GO:0030048: actin filament-based movement	1.12E-03
29	GO:0009785: blue light signaling pathway	1.12E-03
30	GO:0010207: photosystem II assembly	1.20E-03
31	GO:0010540: basipetal auxin transport	1.20E-03
32	GO:2000377: regulation of reactive oxygen species metabolic process	1.49E-03
33	GO:0007017: microtubule-based process	1.59E-03
34	GO:0071555: cell wall organization	1.74E-03
35	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.80E-03
36	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.91E-03
37	GO:0048443: stamen development	2.02E-03
38	GO:0009958: positive gravitropism	2.36E-03
39	GO:0015979: photosynthesis	2.50E-03
40	GO:0010583: response to cyclopentenone	2.84E-03
41	GO:0016032: viral process	2.84E-03
42	GO:0030163: protein catabolic process	2.96E-03
43	GO:0009639: response to red or far red light	3.09E-03
44	GO:0009828: plant-type cell wall loosening	3.09E-03
45	GO:0010252: auxin homeostasis	3.09E-03
46	GO:0048364: root development	3.35E-03
47	GO:0010411: xyloglucan metabolic process	3.89E-03
48	GO:0010218: response to far red light	4.46E-03
49	GO:0009734: auxin-activated signaling pathway	4.51E-03
50	GO:0048527: lateral root development	4.60E-03
51	GO:0009637: response to blue light	4.90E-03
52	GO:0006631: fatty acid metabolic process	5.52E-03
53	GO:0009640: photomorphogenesis	5.84E-03
54	GO:0031347: regulation of defense response	6.66E-03
55	GO:0055085: transmembrane transport	7.19E-03
56	GO:0006857: oligopeptide transport	7.52E-03
57	GO:0009740: gibberellic acid mediated signaling pathway	8.79E-03
58	GO:0009739: response to gibberellin	1.46E-02
59	GO:0007166: cell surface receptor signaling pathway	1.48E-02
60	GO:0005975: carbohydrate metabolic process	1.75E-02
61	GO:0009826: unidimensional cell growth	1.79E-02
62	GO:0009658: chloroplast organization	1.84E-02
63	GO:0080167: response to karrikin	2.14E-02
64	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.19E-02
65	GO:0007165: signal transduction	2.40E-02
66	GO:0006886: intracellular protein transport	2.49E-02
67	GO:0032259: methylation	2.74E-02
68	GO:0009408: response to heat	2.83E-02
69	GO:0009416: response to light stimulus	4.25E-02
70	GO:0009611: response to wounding	4.32E-02

Rank	GO Term	Adjusted P value
1	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
2	GO:0043864: indoleacetamide hydrolase activity	0.00E+00
3	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
4	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
5	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
6	GO:0010329: auxin efflux transmembrane transporter activity	2.34E-05
7	GO:0080054: low-affinity nitrate transmembrane transporter activity	1.04E-04
8	GO:0016851: magnesium chelatase activity	1.55E-04
9	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	2.12E-04
10	GO:0009044: xylan 1,4-beta-xylosidase activity	2.12E-04
11	GO:0046556: alpha-L-arabinofuranosidase activity	2.12E-04
12	GO:0005096: GTPase activator activity	2.37E-04
13	GO:0017137: Rab GTPase binding	2.73E-04
14	GO:0004040: amidase activity	2.73E-04
15	GO:0004650: polygalacturonase activity	6.38E-04
16	GO:0009672: auxin:proton symporter activity	7.77E-04
17	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.09E-03
18	GO:0031072: heat shock protein binding	1.12E-03
19	GO:0003774: motor activity	1.20E-03
20	GO:0003714: transcription corepressor activity	1.49E-03
21	GO:0003756: protein disulfide isomerase activity	2.02E-03
22	GO:0004518: nuclease activity	2.84E-03
23	GO:0005200: structural constituent of cytoskeleton	3.22E-03
24	GO:0008236: serine-type peptidase activity	4.03E-03
25	GO:0016301: kinase activity	4.89E-03
26	GO:0004712: protein serine/threonine/tyrosine kinase activity	5.21E-03
27	GO:0005515: protein binding	7.14E-03
28	GO:0003777: microtubule motor activity	7.70E-03
29	GO:0051082: unfolded protein binding	9.17E-03
30	GO:0016829: lyase activity	1.14E-02
31	GO:0004252: serine-type endopeptidase activity	1.16E-02
32	GO:0005215: transporter activity	1.27E-02
33	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.60E-02
34	GO:0004871: signal transducer activity	2.52E-02
35	GO:0003924: GTPase activity	2.83E-02
36	GO:0005524: ATP binding	2.88E-02

Rank	GO Term	Adjusted P value
1	GO:0009534: chloroplast thylakoid	1.01E-04
2	GO:0010007: magnesium chelatase complex	1.04E-04
3	GO:0009531: secondary cell wall	1.55E-04
4	GO:0009533: chloroplast stromal thylakoid	4.74E-04
5	GO:0045298: tubulin complex	6.98E-04
6	GO:0009535: chloroplast thylakoid membrane	8.55E-04
7	GO:0016459: myosin complex	8.59E-04
8	GO:0009543: chloroplast thylakoid lumen	8.61E-04
9	GO:0030095: chloroplast photosystem II	1.20E-03
10	GO:0005886: plasma membrane	1.62E-03
11	GO:0009505: plant-type cell wall	2.31E-03
12	GO:0009522: photosystem I	2.48E-03
13	GO:0009507: chloroplast	3.04E-03
14	GO:0009570: chloroplast stroma	4.32E-03
15	GO:0031977: thylakoid lumen	5.52E-03
16	GO:0010008: endosome membrane	8.24E-03
17	GO:0012505: endomembrane system	8.98E-03
18	GO:0005618: cell wall	9.92E-03
19	GO:0009506: plasmodesma	1.25E-02
20	GO:0005874: microtubule	2.09E-02
21	GO:0031969: chloroplast membrane	2.14E-02
22	GO:0005576: extracellular region	3.46E-02
23	GO:0016020: membrane	3.55E-02