GO Enrichment Analysis of Co-expressed Genes with
AT3G04790
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006437: tyrosyl-tRNA aminoacylation | 0.00E+00 |
| 2 | GO:0070272: proton-transporting ATP synthase complex biogenesis | 0.00E+00 |
| 3 | GO:0015882: L-ascorbic acid transport | 0.00E+00 |
| 4 | GO:0009946: proximal/distal axis specification | 0.00E+00 |
| 5 | GO:0051881: regulation of mitochondrial membrane potential | 0.00E+00 |
| 6 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 4.79E-07 |
| 7 | GO:0019253: reductive pentose-phosphate cycle | 4.80E-06 |
| 8 | GO:0006096: glycolytic process | 2.80E-05 |
| 9 | GO:0010028: xanthophyll cycle | 9.50E-05 |
| 10 | GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process | 9.50E-05 |
| 11 | GO:0046686: response to cadmium ion | 9.67E-05 |
| 12 | GO:0000272: polysaccharide catabolic process | 1.41E-04 |
| 13 | GO:0009767: photosynthetic electron transport chain | 1.88E-04 |
| 14 | GO:0010020: chloroplast fission | 2.13E-04 |
| 15 | GO:0080183: response to photooxidative stress | 2.24E-04 |
| 16 | GO:0043039: tRNA aminoacylation | 2.24E-04 |
| 17 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 2.24E-04 |
| 18 | GO:0009662: etioplast organization | 2.24E-04 |
| 19 | GO:1904143: positive regulation of carotenoid biosynthetic process | 2.24E-04 |
| 20 | GO:0009658: chloroplast organization | 2.36E-04 |
| 21 | GO:0010338: leaf formation | 3.73E-04 |
| 22 | GO:2000082: regulation of L-ascorbic acid biosynthetic process | 3.73E-04 |
| 23 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 5.37E-04 |
| 24 | GO:0010239: chloroplast mRNA processing | 5.37E-04 |
| 25 | GO:0033014: tetrapyrrole biosynthetic process | 5.37E-04 |
| 26 | GO:0043572: plastid fission | 5.37E-04 |
| 27 | GO:2001141: regulation of RNA biosynthetic process | 5.37E-04 |
| 28 | GO:0006479: protein methylation | 7.14E-04 |
| 29 | GO:0019676: ammonia assimilation cycle | 7.14E-04 |
| 30 | GO:0019464: glycine decarboxylation via glycine cleavage system | 7.14E-04 |
| 31 | GO:0045088: regulation of innate immune response | 7.14E-04 |
| 32 | GO:0006546: glycine catabolic process | 7.14E-04 |
| 33 | GO:0009902: chloroplast relocation | 7.14E-04 |
| 34 | GO:0006542: glutamine biosynthetic process | 7.14E-04 |
| 35 | GO:0010236: plastoquinone biosynthetic process | 9.02E-04 |
| 36 | GO:0042793: transcription from plastid promoter | 1.10E-03 |
| 37 | GO:0042026: protein refolding | 1.31E-03 |
| 38 | GO:1901259: chloroplast rRNA processing | 1.31E-03 |
| 39 | GO:0006458: 'de novo' protein folding | 1.31E-03 |
| 40 | GO:0009416: response to light stimulus | 1.44E-03 |
| 41 | GO:0000105: histidine biosynthetic process | 1.78E-03 |
| 42 | GO:0048564: photosystem I assembly | 1.78E-03 |
| 43 | GO:0008610: lipid biosynthetic process | 1.78E-03 |
| 44 | GO:0005978: glycogen biosynthetic process | 1.78E-03 |
| 45 | GO:0006810: transport | 1.84E-03 |
| 46 | GO:0071482: cellular response to light stimulus | 2.03E-03 |
| 47 | GO:0048193: Golgi vesicle transport | 2.03E-03 |
| 48 | GO:0009744: response to sucrose | 2.16E-03 |
| 49 | GO:0098656: anion transmembrane transport | 2.29E-03 |
| 50 | GO:0006783: heme biosynthetic process | 2.29E-03 |
| 51 | GO:0006779: porphyrin-containing compound biosynthetic process | 2.56E-03 |
| 52 | GO:0008356: asymmetric cell division | 2.56E-03 |
| 53 | GO:0051555: flavonol biosynthetic process | 2.85E-03 |
| 54 | GO:0019684: photosynthesis, light reaction | 3.14E-03 |
| 55 | GO:0006352: DNA-templated transcription, initiation | 3.14E-03 |
| 56 | GO:0018119: peptidyl-cysteine S-nitrosylation | 3.14E-03 |
| 57 | GO:0006006: glucose metabolic process | 3.76E-03 |
| 58 | GO:0008152: metabolic process | 4.03E-03 |
| 59 | GO:0042343: indole glucosinolate metabolic process | 4.41E-03 |
| 60 | GO:0000162: tryptophan biosynthetic process | 4.75E-03 |
| 61 | GO:0009944: polarity specification of adaxial/abaxial axis | 5.10E-03 |
| 62 | GO:0006418: tRNA aminoacylation for protein translation | 5.46E-03 |
| 63 | GO:0007017: microtubule-based process | 5.46E-03 |
| 64 | GO:0098542: defense response to other organism | 5.83E-03 |
| 65 | GO:0061077: chaperone-mediated protein folding | 5.83E-03 |
| 66 | GO:0006730: one-carbon metabolic process | 6.20E-03 |
| 67 | GO:0009735: response to cytokinin | 6.58E-03 |
| 68 | GO:0009409: response to cold | 6.66E-03 |
| 69 | GO:0016117: carotenoid biosynthetic process | 7.38E-03 |
| 70 | GO:0006342: chromatin silencing | 8.21E-03 |
| 71 | GO:0009741: response to brassinosteroid | 8.21E-03 |
| 72 | GO:0009646: response to absence of light | 8.63E-03 |
| 73 | GO:0019252: starch biosynthetic process | 9.06E-03 |
| 74 | GO:0048510: regulation of timing of transition from vegetative to reproductive phase | 9.51E-03 |
| 75 | GO:0032502: developmental process | 9.96E-03 |
| 76 | GO:0010286: heat acclimation | 1.14E-02 |
| 77 | GO:0009615: response to virus | 1.23E-02 |
| 78 | GO:0048573: photoperiodism, flowering | 1.38E-02 |
| 79 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 1.40E-02 |
| 80 | GO:0009817: defense response to fungus, incompatible interaction | 1.49E-02 |
| 81 | GO:0018298: protein-chromophore linkage | 1.49E-02 |
| 82 | GO:0009407: toxin catabolic process | 1.59E-02 |
| 83 | GO:0007568: aging | 1.65E-02 |
| 84 | GO:0009637: response to blue light | 1.76E-02 |
| 85 | GO:0009853: photorespiration | 1.76E-02 |
| 86 | GO:0034599: cellular response to oxidative stress | 1.81E-02 |
| 87 | GO:0006839: mitochondrial transport | 1.93E-02 |
| 88 | GO:0006629: lipid metabolic process | 2.01E-02 |
| 89 | GO:0009636: response to toxic substance | 2.29E-02 |
| 90 | GO:0009965: leaf morphogenesis | 2.29E-02 |
| 91 | GO:0042538: hyperosmotic salinity response | 2.47E-02 |
| 92 | GO:0009742: brassinosteroid mediated signaling pathway | 3.49E-02 |
| 93 | GO:0009790: embryo development | 4.38E-02 |
| 94 | GO:0006457: protein folding | 4.59E-02 |
| 95 | GO:0006633: fatty acid biosynthetic process | 4.61E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity | 0.00E+00 |
| 2 | GO:0009974: zeinoxanthin epsilon hydroxylase activity | 0.00E+00 |
| 3 | GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity | 0.00E+00 |
| 4 | GO:0008962: phosphatidylglycerophosphatase activity | 0.00E+00 |
| 5 | GO:0015229: L-ascorbic acid transporter activity | 0.00E+00 |
| 6 | GO:0003858: 3-hydroxybutyrate dehydrogenase activity | 0.00E+00 |
| 7 | GO:0004618: phosphoglycerate kinase activity | 4.79E-07 |
| 8 | GO:0031072: heat shock protein binding | 3.85E-06 |
| 9 | GO:0102229: amylopectin maltohydrolase activity | 2.08E-05 |
| 10 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 2.96E-05 |
| 11 | GO:0016161: beta-amylase activity | 2.96E-05 |
| 12 | GO:0051082: unfolded protein binding | 4.02E-05 |
| 13 | GO:0004831: tyrosine-tRNA ligase activity | 9.50E-05 |
| 14 | GO:0004325: ferrochelatase activity | 9.50E-05 |
| 15 | GO:0004326: tetrahydrofolylpolyglutamate synthase activity | 2.24E-04 |
| 16 | GO:0004047: aminomethyltransferase activity | 2.24E-04 |
| 17 | GO:0004312: fatty acid synthase activity | 2.24E-04 |
| 18 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 2.24E-04 |
| 19 | GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity | 3.73E-04 |
| 20 | GO:0003913: DNA photolyase activity | 3.73E-04 |
| 21 | GO:0004148: dihydrolipoyl dehydrogenase activity | 3.73E-04 |
| 22 | GO:0030267: glyoxylate reductase (NADP) activity | 3.73E-04 |
| 23 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 4.01E-04 |
| 24 | GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity | 5.37E-04 |
| 25 | GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity | 5.37E-04 |
| 26 | GO:0008276: protein methyltransferase activity | 5.37E-04 |
| 27 | GO:0004375: glycine dehydrogenase (decarboxylating) activity | 5.37E-04 |
| 28 | GO:0001053: plastid sigma factor activity | 7.14E-04 |
| 29 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 7.14E-04 |
| 30 | GO:0016987: sigma factor activity | 7.14E-04 |
| 31 | GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity | 7.14E-04 |
| 32 | GO:0008878: glucose-1-phosphate adenylyltransferase activity | 7.14E-04 |
| 33 | GO:0004356: glutamate-ammonia ligase activity | 9.02E-04 |
| 34 | GO:0008374: O-acyltransferase activity | 9.02E-04 |
| 35 | GO:0080030: methyl indole-3-acetate esterase activity | 1.10E-03 |
| 36 | GO:0008194: UDP-glycosyltransferase activity | 1.11E-03 |
| 37 | GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity | 1.31E-03 |
| 38 | GO:0009881: photoreceptor activity | 1.54E-03 |
| 39 | GO:0043295: glutathione binding | 1.54E-03 |
| 40 | GO:0004714: transmembrane receptor protein tyrosine kinase activity | 1.78E-03 |
| 41 | GO:0005198: structural molecule activity | 2.42E-03 |
| 42 | GO:0051287: NAD binding | 2.60E-03 |
| 43 | GO:0044183: protein binding involved in protein folding | 3.14E-03 |
| 44 | GO:0008327: methyl-CpG binding | 3.14E-03 |
| 45 | GO:0080043: quercetin 3-O-glucosyltransferase activity | 3.74E-03 |
| 46 | GO:0080044: quercetin 7-O-glucosyltransferase activity | 3.74E-03 |
| 47 | GO:0008081: phosphoric diester hydrolase activity | 3.76E-03 |
| 48 | GO:0005315: inorganic phosphate transmembrane transporter activity | 3.76E-03 |
| 49 | GO:0022857: transmembrane transporter activity | 3.86E-03 |
| 50 | GO:0005528: FK506 binding | 5.10E-03 |
| 51 | GO:0008514: organic anion transmembrane transporter activity | 6.98E-03 |
| 52 | GO:0003756: protein disulfide isomerase activity | 6.98E-03 |
| 53 | GO:0004812: aminoacyl-tRNA ligase activity | 7.38E-03 |
| 54 | GO:0016740: transferase activity | 9.49E-03 |
| 55 | GO:0048038: quinone binding | 9.51E-03 |
| 56 | GO:0008483: transaminase activity | 1.14E-02 |
| 57 | GO:0016597: amino acid binding | 1.18E-02 |
| 58 | GO:0005509: calcium ion binding | 1.63E-02 |
| 59 | GO:0050897: cobalt ion binding | 1.65E-02 |
| 60 | GO:0005524: ATP binding | 1.80E-02 |
| 61 | GO:0050661: NADP binding | 1.93E-02 |
| 62 | GO:0004364: glutathione transferase activity | 2.05E-02 |
| 63 | GO:0043621: protein self-association | 2.23E-02 |
| 64 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.35E-02 |
| 65 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 2.60E-02 |
| 66 | GO:0016758: transferase activity, transferring hexosyl groups | 3.85E-02 |
| 67 | GO:0019843: rRNA binding | 3.92E-02 |
| 68 | GO:0016787: hydrolase activity | 4.65E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0030931: heterotetrameric ADPG pyrophosphorylase complex | 0.00E+00 |
| 2 | GO:0009344: nitrite reductase complex [NAD(P)H] | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 1.04E-17 |
| 4 | GO:0009570: chloroplast stroma | 1.37E-13 |
| 5 | GO:0009941: chloroplast envelope | 2.60E-10 |
| 6 | GO:0009535: chloroplast thylakoid membrane | 5.02E-09 |
| 7 | GO:0010319: stromule | 5.77E-05 |
| 8 | GO:0009543: chloroplast thylakoid lumen | 6.17E-05 |
| 9 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 8.24E-05 |
| 10 | GO:0030095: chloroplast photosystem II | 2.13E-04 |
| 11 | GO:0045254: pyruvate dehydrogenase complex | 2.24E-04 |
| 12 | GO:0009654: photosystem II oxygen evolving complex | 3.32E-04 |
| 13 | GO:0009579: thylakoid | 3.72E-04 |
| 14 | GO:0005960: glycine cleavage complex | 5.37E-04 |
| 15 | GO:0019898: extrinsic component of membrane | 6.82E-04 |
| 16 | GO:0055035: plastid thylakoid membrane | 9.02E-04 |
| 17 | GO:0009295: nucleoid | 9.27E-04 |
| 18 | GO:0000793: condensed chromosome | 1.10E-03 |
| 19 | GO:0009534: chloroplast thylakoid | 1.92E-03 |
| 20 | GO:0042644: chloroplast nucleoid | 2.29E-03 |
| 21 | GO:0048046: apoplast | 2.63E-03 |
| 22 | GO:0009508: plastid chromosome | 3.76E-03 |
| 23 | GO:0043231: intracellular membrane-bounded organelle | 4.03E-03 |
| 24 | GO:0005759: mitochondrial matrix | 6.42E-03 |
| 25 | GO:0000790: nuclear chromatin | 7.38E-03 |
| 26 | GO:0005778: peroxisomal membrane | 1.14E-02 |
| 27 | GO:0031969: chloroplast membrane | 1.36E-02 |
| 28 | GO:0000786: nucleosome | 1.70E-02 |
| 29 | GO:0031977: thylakoid lumen | 1.99E-02 |
| 30 | GO:0009536: plastid | 2.33E-02 |
| 31 | GO:0005747: mitochondrial respiratory chain complex I | 3.00E-02 |
| 32 | GO:0009706: chloroplast inner membrane | 3.34E-02 |
| 33 | GO:0022626: cytosolic ribosome | 3.41E-02 |