Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G04640

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0030149: sphingolipid catabolic process0.00E+00
2GO:0010200: response to chitin1.28E-05
3GO:0070370: cellular heat acclimation2.32E-05
4GO:0009816: defense response to bacterium, incompatible interaction3.72E-05
5GO:0009617: response to bacterium6.66E-05
6GO:1902478: negative regulation of defense response to bacterium, incompatible interaction6.74E-05
7GO:0051245: negative regulation of cellular defense response6.74E-05
8GO:0033306: phytol metabolic process6.74E-05
9GO:0034605: cellular response to heat1.31E-04
10GO:0019752: carboxylic acid metabolic process1.62E-04
11GO:0009814: defense response, incompatible interaction2.53E-04
12GO:0035428: hexose transmembrane transport2.53E-04
13GO:0034051: negative regulation of plant-type hypersensitive response2.75E-04
14GO:0010447: response to acidic pH2.75E-04
15GO:0046323: glucose import3.82E-04
16GO:0006612: protein targeting to membrane3.98E-04
17GO:0048530: fruit morphogenesis3.98E-04
18GO:0034219: carbohydrate transmembrane transport3.98E-04
19GO:0002679: respiratory burst involved in defense response3.98E-04
20GO:0080037: negative regulation of cytokinin-activated signaling pathway5.32E-04
21GO:0046345: abscisic acid catabolic process5.32E-04
22GO:0010363: regulation of plant-type hypersensitive response5.32E-04
23GO:0010508: positive regulation of autophagy5.32E-04
24GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process6.30E-04
25GO:0006952: defense response6.69E-04
26GO:2000762: regulation of phenylpropanoid metabolic process6.73E-04
27GO:0010337: regulation of salicylic acid metabolic process8.23E-04
28GO:0009117: nucleotide metabolic process8.23E-04
29GO:0009759: indole glucosinolate biosynthetic process8.23E-04
30GO:0010199: organ boundary specification between lateral organs and the meristem9.79E-04
31GO:0009094: L-phenylalanine biosynthetic process9.79E-04
32GO:0006970: response to osmotic stress1.03E-03
33GO:0010044: response to aluminum ion1.14E-03
34GO:0006955: immune response1.14E-03
35GO:0009061: anaerobic respiration1.32E-03
36GO:0030162: regulation of proteolysis1.32E-03
37GO:0010262: somatic embryogenesis1.50E-03
38GO:0010120: camalexin biosynthetic process1.50E-03
39GO:0043562: cellular response to nitrogen levels1.50E-03
40GO:0051865: protein autoubiquitination1.69E-03
41GO:0019432: triglyceride biosynthetic process1.69E-03
42GO:0030042: actin filament depolymerization1.89E-03
43GO:0006032: chitin catabolic process2.10E-03
44GO:0043069: negative regulation of programmed cell death2.10E-03
45GO:0000272: polysaccharide catabolic process2.31E-03
46GO:0048229: gametophyte development2.31E-03
47GO:0009682: induced systemic resistance2.31E-03
48GO:0052544: defense response by callose deposition in cell wall2.31E-03
49GO:0015770: sucrose transport2.31E-03
50GO:0009626: plant-type hypersensitive response2.32E-03
51GO:0046688: response to copper ion3.23E-03
52GO:0070588: calcium ion transmembrane transport3.23E-03
53GO:0010053: root epidermal cell differentiation3.23E-03
54GO:0009833: plant-type primary cell wall biogenesis3.48E-03
55GO:0009651: response to salt stress3.48E-03
56GO:0009863: salicylic acid mediated signaling pathway3.73E-03
57GO:0006825: copper ion transport3.99E-03
58GO:0016998: cell wall macromolecule catabolic process4.26E-03
59GO:0048278: vesicle docking4.26E-03
60GO:0016226: iron-sulfur cluster assembly4.53E-03
61GO:0009625: response to insect4.81E-03
62GO:0010091: trichome branching5.09E-03
63GO:0007166: cell surface receptor signaling pathway5.11E-03
64GO:0000271: polysaccharide biosynthetic process5.68E-03
65GO:0006520: cellular amino acid metabolic process5.98E-03
66GO:0061025: membrane fusion6.28E-03
67GO:0009737: response to abscisic acid6.57E-03
68GO:0006464: cellular protein modification process7.90E-03
69GO:0051607: defense response to virus8.59E-03
70GO:0001666: response to hypoxia8.93E-03
71GO:0006906: vesicle fusion9.65E-03
72GO:0009414: response to water deprivation9.77E-03
73GO:0006950: response to stress1.00E-02
74GO:0042742: defense response to bacterium1.01E-02
75GO:0045454: cell redox homeostasis1.03E-02
76GO:0030244: cellulose biosynthetic process1.08E-02
77GO:0008219: cell death1.08E-02
78GO:0009407: toxin catabolic process1.15E-02
79GO:0009733: response to auxin1.17E-02
80GO:0009751: response to salicylic acid1.25E-02
81GO:0009867: jasmonic acid mediated signaling pathway1.27E-02
82GO:0009753: response to jasmonic acid1.36E-02
83GO:0008152: metabolic process1.40E-02
84GO:0006887: exocytosis1.44E-02
85GO:0008643: carbohydrate transport1.61E-02
86GO:0009636: response to toxic substance1.65E-02
87GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process1.74E-02
88GO:0051603: proteolysis involved in cellular protein catabolic process1.93E-02
89GO:0009611: response to wounding2.31E-02
90GO:0016569: covalent chromatin modification2.31E-02
91GO:0035556: intracellular signal transduction2.38E-02
92GO:0018105: peptidyl-serine phosphorylation2.47E-02
93GO:0000398: mRNA splicing, via spliceosome2.68E-02
94GO:0040008: regulation of growth3.45E-02
95GO:0009739: response to gibberellin3.86E-02
96GO:0006470: protein dephosphorylation3.92E-02
97GO:0050832: defense response to fungus3.95E-02
98GO:0016567: protein ubiquitination4.07E-02
99GO:0006468: protein phosphorylation4.47E-02
100GO:0006979: response to oxidative stress4.58E-02
RankGO TermAdjusted P value
1GO:0008117: sphinganine-1-phosphate aldolase activity0.00E+00
2GO:0004385: guanylate kinase activity1.62E-04
3GO:0050403: trans-zeatin O-beta-D-glucosyltransferase activity1.62E-04
4GO:0050502: cis-zeatin O-beta-D-glucosyltransferase activity1.62E-04
5GO:0016531: copper chaperone activity2.75E-04
6GO:0005355: glucose transmembrane transporter activity4.10E-04
7GO:0047769: arogenate dehydratase activity5.32E-04
8GO:0004664: prephenate dehydratase activity5.32E-04
9GO:0008194: UDP-glycosyltransferase activity6.30E-04
10GO:0031386: protein tag6.73E-04
11GO:0010294: abscisic acid glucosyltransferase activity6.73E-04
12GO:0015145: monosaccharide transmembrane transporter activity6.73E-04
13GO:0004144: diacylglycerol O-acyltransferase activity9.79E-04
14GO:0016831: carboxy-lyase activity1.14E-03
15GO:0008506: sucrose:proton symporter activity1.14E-03
16GO:0035064: methylated histone binding1.32E-03
17GO:0004871: signal transducer activity1.62E-03
18GO:0005509: calcium ion binding1.85E-03
19GO:0004568: chitinase activity2.10E-03
20GO:0015020: glucuronosyltransferase activity2.10E-03
21GO:0004713: protein tyrosine kinase activity2.10E-03
22GO:0008794: arsenate reductase (glutaredoxin) activity2.31E-03
23GO:0080043: quercetin 3-O-glucosyltransferase activity2.39E-03
24GO:0080044: quercetin 7-O-glucosyltransferase activity2.39E-03
25GO:0005262: calcium channel activity2.76E-03
26GO:0005388: calcium-transporting ATPase activity2.76E-03
27GO:0008061: chitin binding3.23E-03
28GO:0051119: sugar transmembrane transporter activity3.23E-03
29GO:0004725: protein tyrosine phosphatase activity3.48E-03
30GO:0015144: carbohydrate transmembrane transporter activity3.89E-03
31GO:0004675: transmembrane receptor protein serine/threonine kinase activity4.18E-03
32GO:0004298: threonine-type endopeptidase activity4.26E-03
33GO:0005351: sugar:proton symporter activity4.38E-03
34GO:0016760: cellulose synthase (UDP-forming) activity4.81E-03
35GO:0022891: substrate-specific transmembrane transporter activity4.81E-03
36GO:0005516: calmodulin binding6.90E-03
37GO:0016759: cellulose synthase activity7.90E-03
38GO:0016791: phosphatase activity7.90E-03
39GO:0016597: amino acid binding8.59E-03
40GO:0061630: ubiquitin protein ligase activity9.02E-03
41GO:0009931: calcium-dependent protein serine/threonine kinase activity9.65E-03
42GO:0004721: phosphoprotein phosphatase activity1.00E-02
43GO:0004683: calmodulin-dependent protein kinase activity1.00E-02
44GO:0004222: metalloendopeptidase activity1.15E-02
45GO:0016614: oxidoreductase activity, acting on CH-OH group of donors1.19E-02
46GO:0003746: translation elongation factor activity1.27E-02
47GO:0016757: transferase activity, transferring glycosyl groups1.33E-02
48GO:0000149: SNARE binding1.35E-02
49GO:0004712: protein serine/threonine/tyrosine kinase activity1.35E-02
50GO:0009055: electron carrier activity1.36E-02
51GO:0004364: glutathione transferase activity1.48E-02
52GO:0004842: ubiquitin-protein transferase activity1.52E-02
53GO:0005484: SNAP receptor activity1.52E-02
54GO:0051537: 2 iron, 2 sulfur cluster binding1.61E-02
55GO:0016298: lipase activity1.93E-02
56GO:0031625: ubiquitin protein ligase binding2.02E-02
57GO:0003779: actin binding2.37E-02
58GO:0015035: protein disulfide oxidoreductase activity2.47E-02
59GO:0016758: transferase activity, transferring hexosyl groups2.78E-02
60GO:0030170: pyridoxal phosphate binding3.05E-02
61GO:0008270: zinc ion binding4.40E-02
62GO:0044212: transcription regulatory region DNA binding4.55E-02
63GO:0008168: methyltransferase activity4.73E-02
RankGO TermAdjusted P value
1GO:0005758: mitochondrial intermembrane space1.88E-04
2GO:0005886: plasma membrane5.64E-04
3GO:0005834: heterotrimeric G-protein complex2.32E-03
4GO:0031012: extracellular matrix2.76E-03
5GO:0005783: endoplasmic reticulum3.78E-03
6GO:0005839: proteasome core complex4.26E-03
7GO:0015629: actin cytoskeleton4.81E-03
8GO:0019005: SCF ubiquitin ligase complex1.08E-02
9GO:0043231: intracellular membrane-bounded organelle1.40E-02
10GO:0031201: SNARE complex1.44E-02
11GO:0005887: integral component of plasma membrane1.72E-02
12GO:0000502: proteasome complex1.88E-02
13GO:0012505: endomembrane system2.37E-02
14GO:0009706: chloroplast inner membrane2.42E-02
15GO:0010287: plastoglobule2.73E-02
16GO:0005623: cell2.89E-02
17GO:0046658: anchored component of plasma membrane4.35E-02
Gene type



Gene DE type