co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G04400

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0071433: cell wall repair	0.00E+00
2	GO:1904874: positive regulation of telomerase RNA localization to Cajal body	0.00E+00
3	GO:0071731: response to nitric oxide	0.00E+00
4	GO:0006412: translation	9.80E-58
5	GO:0042254: ribosome biogenesis	1.56E-23
6	GO:0000027: ribosomal large subunit assembly	2.21E-07
7	GO:0000028: ribosomal small subunit assembly	8.08E-07
8	GO:0009651: response to salt stress	2.17E-06
9	GO:0002181: cytoplasmic translation	2.75E-06
10	GO:0009735: response to cytokinin	6.25E-06
11	GO:0006626: protein targeting to mitochondrion	6.58E-06
12	GO:0044205: 'de novo' UMP biosynthetic process	1.22E-05
13	GO:0007005: mitochondrion organization	2.33E-05
14	GO:0046686: response to cadmium ion	3.94E-05
15	GO:0009955: adaxial/abaxial pattern specification	4.28E-05
16	GO:0006407: rRNA export from nucleus	1.20E-04
17	GO:0031120: snRNA pseudouridine synthesis	1.20E-04
18	GO:0031118: rRNA pseudouridine synthesis	1.20E-04
19	GO:0000494: box C/D snoRNA 3'-end processing	1.20E-04
20	GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.20E-04
21	GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.20E-04
22	GO:0006900: membrane budding	1.20E-04
23	GO:1990258: histone glutamine methylation	1.20E-04
24	GO:0006457: protein folding	1.42E-04
25	GO:0006820: anion transport	2.26E-04
26	GO:0009220: pyrimidine ribonucleotide biosynthetic process	2.77E-04
27	GO:0048569: post-embryonic animal organ development	2.77E-04
28	GO:0055129: L-proline biosynthetic process	2.77E-04
29	GO:1902626: assembly of large subunit precursor of preribosome	4.58E-04
30	GO:0042256: mature ribosome assembly	4.58E-04
31	GO:0090506: axillary shoot meristem initiation	4.58E-04
32	GO:0055074: calcium ion homeostasis	4.58E-04
33	GO:0006364: rRNA processing	4.63E-04
34	GO:0015696: ammonium transport	6.57E-04
35	GO:0007004: telomere maintenance via telomerase	6.57E-04
36	GO:0010197: polar nucleus fusion	8.00E-04
37	GO:2000032: regulation of secondary shoot formation	8.72E-04
38	GO:0042274: ribosomal small subunit biogenesis	8.72E-04
39	GO:0072488: ammonium transmembrane transport	8.72E-04
40	GO:0071493: cellular response to UV-B	1.10E-03
41	GO:0031167: rRNA methylation	1.10E-03
42	GO:0006561: proline biosynthetic process	1.35E-03
43	GO:0000470: maturation of LSU-rRNA	1.35E-03
44	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	1.61E-03
45	GO:0000911: cytokinesis by cell plate formation	1.61E-03
46	GO:0009423: chorismate biosynthetic process	1.61E-03
47	GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process	1.89E-03
48	GO:0009793: embryo development ending in seed dormancy	2.01E-03
49	GO:0010043: response to zinc ion	2.08E-03
50	GO:0001522: pseudouridine synthesis	2.19E-03
51	GO:0015031: protein transport	2.49E-03
52	GO:0006526: arginine biosynthetic process	2.50E-03
53	GO:0001510: RNA methylation	2.50E-03
54	GO:0006189: 'de novo' IMP biosynthetic process	2.82E-03
55	GO:0098656: anion transmembrane transport	2.82E-03
56	GO:0000387: spliceosomal snRNP assembly	3.16E-03
57	GO:0009965: leaf morphogenesis	3.28E-03
58	GO:0010162: seed dormancy process	3.51E-03
59	GO:0009073: aromatic amino acid family biosynthetic process	3.88E-03
60	GO:0006913: nucleocytoplasmic transport	3.88E-03
61	GO:0006414: translational elongation	4.26E-03
62	GO:0048467: gynoecium development	5.04E-03
63	GO:0009944: polarity specification of adaxial/abaxial axis	6.32E-03
64	GO:0030150: protein import into mitochondrial matrix	6.32E-03
65	GO:0015992: proton transport	7.22E-03
66	GO:0030433: ubiquitin-dependent ERAD pathway	7.69E-03
67	GO:0009294: DNA mediated transformation	8.18E-03
68	GO:0040007: growth	8.18E-03
69	GO:0016036: cellular response to phosphate starvation	8.98E-03
70	GO:0006413: translational initiation	8.98E-03
71	GO:0051028: mRNA transport	9.17E-03
72	GO:0008033: tRNA processing	9.68E-03
73	GO:0000413: protein peptidyl-prolyl isomerization	9.68E-03
74	GO:0006520: cellular amino acid metabolic process	1.02E-02
75	GO:0080156: mitochondrial mRNA modification	1.18E-02
76	GO:0032502: developmental process	1.24E-02
77	GO:0010090: trichome morphogenesis	1.30E-02
78	GO:0010252: auxin homeostasis	1.36E-02
79	GO:0016049: cell growth	1.79E-02
80	GO:0006811: ion transport	1.99E-02
81	GO:0048527: lateral root development	2.05E-02
82	GO:0008283: cell proliferation	2.63E-02
83	GO:0009408: response to heat	2.74E-02
84	GO:0000154: rRNA modification	2.85E-02
85	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	3.01E-02
86	GO:0009409: response to cold	3.89E-02
87	GO:0016569: covalent chromatin modification	4.00E-02
88	GO:0009624: response to nematode	4.17E-02
89	GO:0000398: mRNA splicing, via spliceosome	4.62E-02

Rank	GO Term	Adjusted P value
1	GO:0004070: aspartate carbamoyltransferase activity	0.00E+00
2	GO:0016018: cyclosporin A binding	0.00E+00
3	GO:0004735: pyrroline-5-carboxylate reductase activity	0.00E+00
4	GO:0034513: box H/ACA snoRNA binding	0.00E+00
5	GO:0004107: chorismate synthase activity	0.00E+00
6	GO:0003735: structural constituent of ribosome	6.48E-68
7	GO:0003729: mRNA binding	2.46E-19
8	GO:0030515: snoRNA binding	5.23E-07
9	GO:0003723: RNA binding	3.09E-06
10	GO:0051082: unfolded protein binding	7.23E-05
11	GO:0015288: porin activity	7.49E-05
12	GO:0008308: voltage-gated anion channel activity	9.46E-05
13	GO:0015398: high-affinity secondary active ammonium transmembrane transporter activity	1.20E-04
14	GO:0004088: carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity	1.20E-04
15	GO:1990259: histone-glutamine methyltransferase activity	1.20E-04
16	GO:0004638: phosphoribosylaminoimidazole carboxylase activity	1.20E-04
17	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.60E-04
18	GO:0003746: translation elongation factor activity	2.23E-04
19	GO:0070034: telomerase RNA binding	2.77E-04
20	GO:0016743: carboxyl- or carbamoyltransferase activity	2.77E-04
21	GO:0008649: rRNA methyltransferase activity	4.58E-04
22	GO:0070181: small ribosomal subunit rRNA binding	4.58E-04
23	GO:0008097: 5S rRNA binding	6.57E-04
24	GO:0019843: rRNA binding	9.52E-04
25	GO:0008519: ammonium transmembrane transporter activity	1.35E-03
26	GO:0004017: adenylate kinase activity	1.61E-03
27	GO:0015266: protein channel activity	4.64E-03
28	GO:0004407: histone deacetylase activity	6.32E-03
29	GO:0010181: FMN binding	1.07E-02
30	GO:0003743: translation initiation factor activity	1.13E-02
31	GO:0016597: amino acid binding	1.47E-02
32	GO:0005507: copper ion binding	1.72E-02
33	GO:0050897: cobalt ion binding	2.05E-02
34	GO:0003697: single-stranded DNA binding	2.19E-02
35	GO:0003924: GTPase activity	2.74E-02
36	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.93E-02
37	GO:0000166: nucleotide binding	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0043186: P granule	0.00E+00
2	GO:0090661: box H/ACA telomerase RNP complex	0.00E+00
3	GO:0072589: box H/ACA scaRNP complex	0.00E+00
4	GO:0022626: cytosolic ribosome	1.23E-55
5	GO:0005840: ribosome	1.75E-45
6	GO:0022625: cytosolic large ribosomal subunit	1.43E-43
7	GO:0005730: nucleolus	1.20E-33
8	GO:0022627: cytosolic small ribosomal subunit	3.35E-24
9	GO:0005829: cytosol	2.82E-21
10	GO:0009506: plasmodesma	4.83E-20
11	GO:0005774: vacuolar membrane	6.66E-16
12	GO:0005737: cytoplasm	8.33E-15
13	GO:0015934: large ribosomal subunit	1.81E-14
14	GO:0005773: vacuole	5.44E-11
15	GO:0005618: cell wall	7.73E-10
16	GO:0016020: membrane	1.21E-08
17	GO:0009507: chloroplast	1.01E-06
18	GO:0005788: endoplasmic reticulum lumen	4.64E-06
19	GO:0031428: box C/D snoRNP complex	3.03E-05
20	GO:0046930: pore complex	9.46E-05
21	GO:0005742: mitochondrial outer membrane translocase complex	9.46E-05
22	GO:0005951: carbamoyl-phosphate synthase complex	1.20E-04
23	GO:0030686: 90S preribosome	1.20E-04
24	GO:0015030: Cajal body	1.41E-04
25	GO:0005852: eukaryotic translation initiation factor 3 complex	1.96E-04
26	GO:0032040: small-subunit processome	2.26E-04
27	GO:0005758: mitochondrial intermembrane space	4.09E-04
28	GO:0034719: SMN-Sm protein complex	4.58E-04
29	GO:0005853: eukaryotic translation elongation factor 1 complex	4.58E-04
30	GO:0005741: mitochondrial outer membrane	4.95E-04
31	GO:0015935: small ribosomal subunit	4.95E-04
32	GO:0005747: mitochondrial respiratory chain complex I	5.96E-04
33	GO:0031429: box H/ACA snoRNP complex	6.57E-04
34	GO:0005682: U5 snRNP	8.72E-04
35	GO:0005886: plasma membrane	9.23E-04
36	GO:0005687: U4 snRNP	1.10E-03
37	GO:0097526: spliceosomal tri-snRNP complex	1.10E-03
38	GO:0005689: U12-type spliceosomal complex	1.61E-03
39	GO:0071004: U2-type prespliceosome	2.19E-03
40	GO:0005685: U1 snRNP	2.82E-03
41	GO:0071011: precatalytic spliceosome	3.16E-03
42	GO:0005739: mitochondrion	3.21E-03
43	GO:0005686: U2 snRNP	3.51E-03
44	GO:0071013: catalytic step 2 spliceosome	3.88E-03
45	GO:0019013: viral nucleocapsid	4.64E-03
46	GO:0005743: mitochondrial inner membrane	4.82E-03
47	GO:0005783: endoplasmic reticulum	6.15E-03
48	GO:0016592: mediator complex	1.24E-02
49	GO:0005643: nuclear pore	1.85E-02
50	GO:0005635: nuclear envelope	3.41E-02
51	GO:0009536: plastid	3.44E-02
52	GO:0005681: spliceosomal complex	3.66E-02
53	GO:0005834: heterotrimeric G-protein complex	3.83E-02
54	GO:0005732: small nucleolar ribonucleoprotein complex	4.44E-02
55	GO:0048046: apoplast	4.61E-02