GO Enrichment Analysis of Co-expressed Genes with
AT3G04110
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010378: temperature compensation of the circadian clock | 0.00E+00 |
| 2 | GO:0042906: xanthine transport | 0.00E+00 |
| 3 | GO:0009819: drought recovery | 9.09E-05 |
| 4 | GO:0009415: response to water | 9.09E-05 |
| 5 | GO:1902265: abscisic acid homeostasis | 1.35E-04 |
| 6 | GO:1990641: response to iron ion starvation | 1.35E-04 |
| 7 | GO:0015857: uracil transport | 3.11E-04 |
| 8 | GO:0030259: lipid glycosylation | 3.11E-04 |
| 9 | GO:0006101: citrate metabolic process | 3.11E-04 |
| 10 | GO:0015914: phospholipid transport | 3.11E-04 |
| 11 | GO:0015720: allantoin transport | 3.11E-04 |
| 12 | GO:0042542: response to hydrogen peroxide | 3.73E-04 |
| 13 | GO:0071705: nitrogen compound transport | 5.13E-04 |
| 14 | GO:0042344: indole glucosinolate catabolic process | 5.13E-04 |
| 15 | GO:0030029: actin filament-based process | 5.13E-04 |
| 16 | GO:0015749: monosaccharide transport | 7.34E-04 |
| 17 | GO:1901332: negative regulation of lateral root development | 7.34E-04 |
| 18 | GO:0006882: cellular zinc ion homeostasis | 7.34E-04 |
| 19 | GO:0006624: vacuolar protein processing | 7.34E-04 |
| 20 | GO:0032456: endocytic recycling | 7.34E-04 |
| 21 | GO:0006878: cellular copper ion homeostasis | 9.73E-04 |
| 22 | GO:0006646: phosphatidylethanolamine biosynthetic process | 9.73E-04 |
| 23 | GO:0009687: abscisic acid metabolic process | 9.73E-04 |
| 24 | GO:0015743: malate transport | 9.73E-04 |
| 25 | GO:0009409: response to cold | 9.87E-04 |
| 26 | GO:0006635: fatty acid beta-oxidation | 1.15E-03 |
| 27 | GO:0006656: phosphatidylcholine biosynthetic process | 1.23E-03 |
| 28 | GO:0043097: pyrimidine nucleoside salvage | 1.23E-03 |
| 29 | GO:0048578: positive regulation of long-day photoperiodism, flowering | 1.23E-03 |
| 30 | GO:0010286: heat acclimation | 1.47E-03 |
| 31 | GO:0006206: pyrimidine nucleobase metabolic process | 1.51E-03 |
| 32 | GO:0000741: karyogamy | 1.51E-03 |
| 33 | GO:0042732: D-xylose metabolic process | 1.51E-03 |
| 34 | GO:0031930: mitochondria-nucleus signaling pathway | 1.81E-03 |
| 35 | GO:0045926: negative regulation of growth | 1.81E-03 |
| 36 | GO:0048573: photoperiodism, flowering | 1.93E-03 |
| 37 | GO:0006333: chromatin assembly or disassembly | 2.12E-03 |
| 38 | GO:0010044: response to aluminum ion | 2.12E-03 |
| 39 | GO:0010468: regulation of gene expression | 2.20E-03 |
| 40 | GO:0006811: ion transport | 2.35E-03 |
| 41 | GO:0009737: response to abscisic acid | 2.41E-03 |
| 42 | GO:0009631: cold acclimation | 2.46E-03 |
| 43 | GO:0006491: N-glycan processing | 2.46E-03 |
| 44 | GO:0006102: isocitrate metabolic process | 2.46E-03 |
| 45 | GO:0009061: anaerobic respiration | 2.46E-03 |
| 46 | GO:0001510: RNA methylation | 2.81E-03 |
| 47 | GO:0006099: tricarboxylic acid cycle | 2.82E-03 |
| 48 | GO:0006098: pentose-phosphate shunt | 3.17E-03 |
| 49 | GO:0046916: cellular transition metal ion homeostasis | 3.17E-03 |
| 50 | GO:0008202: steroid metabolic process | 3.55E-03 |
| 51 | GO:0030042: actin filament depolymerization | 3.55E-03 |
| 52 | GO:0009970: cellular response to sulfate starvation | 3.95E-03 |
| 53 | GO:0006995: cellular response to nitrogen starvation | 3.95E-03 |
| 54 | GO:0007064: mitotic sister chromatid cohesion | 3.95E-03 |
| 55 | GO:0080167: response to karrikin | 4.01E-03 |
| 56 | GO:0000165: MAPK cascade | 4.19E-03 |
| 57 | GO:0009682: induced systemic resistance | 4.36E-03 |
| 58 | GO:0052544: defense response by callose deposition in cell wall | 4.36E-03 |
| 59 | GO:0051603: proteolysis involved in cellular protein catabolic process | 4.82E-03 |
| 60 | GO:2000012: regulation of auxin polar transport | 5.22E-03 |
| 61 | GO:0010102: lateral root morphogenesis | 5.22E-03 |
| 62 | GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process | 5.22E-03 |
| 63 | GO:0007034: vacuolar transport | 5.68E-03 |
| 64 | GO:0007015: actin filament organization | 5.68E-03 |
| 65 | GO:0010030: positive regulation of seed germination | 6.14E-03 |
| 66 | GO:0006396: RNA processing | 6.82E-03 |
| 67 | GO:0045333: cellular respiration | 7.11E-03 |
| 68 | GO:0009695: jasmonic acid biosynthetic process | 7.62E-03 |
| 69 | GO:0016575: histone deacetylation | 7.62E-03 |
| 70 | GO:0007165: signal transduction | 8.00E-03 |
| 71 | GO:0051260: protein homooligomerization | 8.14E-03 |
| 72 | GO:0009269: response to desiccation | 8.14E-03 |
| 73 | GO:0009058: biosynthetic process | 8.74E-03 |
| 74 | GO:0071215: cellular response to abscisic acid stimulus | 9.21E-03 |
| 75 | GO:0009306: protein secretion | 9.77E-03 |
| 76 | GO:0009789: positive regulation of abscisic acid-activated signaling pathway | 1.03E-02 |
| 77 | GO:0000226: microtubule cytoskeleton organization | 1.09E-02 |
| 78 | GO:0000413: protein peptidyl-prolyl isomerization | 1.09E-02 |
| 79 | GO:0010051: xylem and phloem pattern formation | 1.09E-02 |
| 80 | GO:0042631: cellular response to water deprivation | 1.09E-02 |
| 81 | GO:0007623: circadian rhythm | 1.15E-02 |
| 82 | GO:0010197: polar nucleus fusion | 1.15E-02 |
| 83 | GO:0046323: glucose import | 1.15E-02 |
| 84 | GO:0042752: regulation of circadian rhythm | 1.21E-02 |
| 85 | GO:0008654: phospholipid biosynthetic process | 1.27E-02 |
| 86 | GO:0009617: response to bacterium | 1.37E-02 |
| 87 | GO:0035556: intracellular signal transduction | 1.46E-02 |
| 88 | GO:0019760: glucosinolate metabolic process | 1.53E-02 |
| 89 | GO:0006904: vesicle docking involved in exocytosis | 1.60E-02 |
| 90 | GO:0010029: regulation of seed germination | 1.80E-02 |
| 91 | GO:0006970: response to osmotic stress | 1.92E-02 |
| 92 | GO:0009817: defense response to fungus, incompatible interaction | 2.09E-02 |
| 93 | GO:0010218: response to far red light | 2.24E-02 |
| 94 | GO:0044550: secondary metabolite biosynthetic process | 2.40E-02 |
| 95 | GO:0009637: response to blue light | 2.48E-02 |
| 96 | GO:0030001: metal ion transport | 2.72E-02 |
| 97 | GO:0006897: endocytosis | 2.80E-02 |
| 98 | GO:0000209: protein polyubiquitination | 3.05E-02 |
| 99 | GO:0009414: response to water deprivation | 3.21E-02 |
| 100 | GO:0009408: response to heat | 3.26E-02 |
| 101 | GO:0016310: phosphorylation | 3.36E-02 |
| 102 | GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process | 3.40E-02 |
| 103 | GO:0042538: hyperosmotic salinity response | 3.49E-02 |
| 104 | GO:0009585: red, far-red light phototransduction | 3.67E-02 |
| 105 | GO:0006857: oligopeptide transport | 3.85E-02 |
| 106 | GO:0055114: oxidation-reduction process | 4.29E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009045: xylose isomerase activity | 0.00E+00 |
| 2 | GO:0005358: high-affinity hydrogen:glucose symporter activity | 0.00E+00 |
| 3 | GO:0016428: tRNA (cytosine-5-)-methyltransferase activity | 0.00E+00 |
| 4 | GO:0050511: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity | 0.00E+00 |
| 5 | GO:0042907: xanthine transmembrane transporter activity | 0.00E+00 |
| 6 | GO:0047787: delta4-3-oxosteroid 5beta-reductase activity | 0.00E+00 |
| 7 | GO:0004525: ribonuclease III activity | 9.09E-05 |
| 8 | GO:0009679: hexose:proton symporter activity | 1.35E-04 |
| 9 | GO:0035671: enone reductase activity | 1.35E-04 |
| 10 | GO:0008692: 3-hydroxybutyryl-CoA epimerase activity | 1.35E-04 |
| 11 | GO:0046870: cadmium ion binding | 1.35E-04 |
| 12 | GO:0032791: lead ion binding | 3.11E-04 |
| 13 | GO:0005274: allantoin uptake transmembrane transporter activity | 3.11E-04 |
| 14 | GO:0004609: phosphatidylserine decarboxylase activity | 3.11E-04 |
| 15 | GO:0003994: aconitate hydratase activity | 3.11E-04 |
| 16 | GO:0003857: 3-hydroxyacyl-CoA dehydrogenase activity | 3.11E-04 |
| 17 | GO:0004096: catalase activity | 5.13E-04 |
| 18 | GO:0004707: MAP kinase activity | 5.84E-04 |
| 19 | GO:0048027: mRNA 5'-UTR binding | 7.34E-04 |
| 20 | GO:0004108: citrate (Si)-synthase activity | 7.34E-04 |
| 21 | GO:0030527: structural constituent of chromatin | 7.34E-04 |
| 22 | GO:0004165: dodecenoyl-CoA delta-isomerase activity | 7.34E-04 |
| 23 | GO:0004300: enoyl-CoA hydratase activity | 7.34E-04 |
| 24 | GO:0015210: uracil transmembrane transporter activity | 9.73E-04 |
| 25 | GO:0008526: phosphatidylinositol transporter activity | 9.73E-04 |
| 26 | GO:0005253: anion channel activity | 9.73E-04 |
| 27 | GO:0009916: alternative oxidase activity | 9.73E-04 |
| 28 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 1.21E-03 |
| 29 | GO:0045300: acyl-[acyl-carrier-protein] desaturase activity | 1.23E-03 |
| 30 | GO:0010294: abscisic acid glucosyltransferase activity | 1.23E-03 |
| 31 | GO:0015145: monosaccharide transmembrane transporter activity | 1.23E-03 |
| 32 | GO:0000293: ferric-chelate reductase activity | 1.51E-03 |
| 33 | GO:0019137: thioglucosidase activity | 1.51E-03 |
| 34 | GO:0003950: NAD+ ADP-ribosyltransferase activity | 1.81E-03 |
| 35 | GO:0004849: uridine kinase activity | 1.81E-03 |
| 36 | GO:0003730: mRNA 3'-UTR binding | 1.81E-03 |
| 37 | GO:0005509: calcium ion binding | 1.92E-03 |
| 38 | GO:0015140: malate transmembrane transporter activity | 2.12E-03 |
| 39 | GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific) | 2.81E-03 |
| 40 | GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity | 3.17E-03 |
| 41 | GO:0004497: monooxygenase activity | 4.01E-03 |
| 42 | GO:0031624: ubiquitin conjugating enzyme binding | 5.68E-03 |
| 43 | GO:0004175: endopeptidase activity | 5.68E-03 |
| 44 | GO:0004407: histone deacetylase activity | 7.11E-03 |
| 45 | GO:0043424: protein histidine kinase binding | 7.62E-03 |
| 46 | GO:0019706: protein-cysteine S-palmitoyltransferase activity | 8.14E-03 |
| 47 | GO:0016301: kinase activity | 1.02E-02 |
| 48 | GO:0004197: cysteine-type endopeptidase activity | 1.40E-02 |
| 49 | GO:0005200: structural constituent of cytoskeleton | 1.60E-02 |
| 50 | GO:0020037: heme binding | 1.75E-02 |
| 51 | GO:0003682: chromatin binding | 1.88E-02 |
| 52 | GO:0030247: polysaccharide binding | 1.95E-02 |
| 53 | GO:0102483: scopolin beta-glucosidase activity | 1.95E-02 |
| 54 | GO:0050897: cobalt ion binding | 2.32E-02 |
| 55 | GO:0005525: GTP binding | 2.56E-02 |
| 56 | GO:0008422: beta-glucosidase activity | 2.64E-02 |
| 57 | GO:0051539: 4 iron, 4 sulfur cluster binding | 2.72E-02 |
| 58 | GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen | 2.85E-02 |
| 59 | GO:0004722: protein serine/threonine phosphatase activity | 2.90E-02 |
| 60 | GO:0005506: iron ion binding | 3.24E-02 |
| 61 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 3.31E-02 |
| 62 | GO:0080043: quercetin 3-O-glucosyltransferase activity | 4.42E-02 |
| 63 | GO:0080044: quercetin 7-O-glucosyltransferase activity | 4.42E-02 |
| 64 | GO:0016874: ligase activity | 4.52E-02 |
| 65 | GO:0003779: actin binding | 4.62E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005777: peroxisome | 1.60E-04 |
| 2 | GO:0005886: plasma membrane | 6.67E-04 |
| 3 | GO:0000323: lytic vacuole | 7.34E-04 |
| 4 | GO:0005851: eukaryotic translation initiation factor 2B complex | 1.51E-03 |
| 5 | GO:0016363: nuclear matrix | 1.81E-03 |
| 6 | GO:0000815: ESCRT III complex | 1.81E-03 |
| 7 | GO:0016021: integral component of membrane | 3.79E-03 |
| 8 | GO:0005773: vacuole | 4.97E-03 |
| 9 | GO:0010008: endosome membrane | 5.68E-03 |
| 10 | GO:0070469: respiratory chain | 7.62E-03 |
| 11 | GO:0015629: actin cytoskeleton | 9.21E-03 |
| 12 | GO:0009705: plant-type vacuole membrane | 1.15E-02 |
| 13 | GO:0031965: nuclear membrane | 1.27E-02 |
| 14 | GO:0000785: chromatin | 1.40E-02 |
| 15 | GO:0005737: cytoplasm | 1.43E-02 |
| 16 | GO:0000151: ubiquitin ligase complex | 2.09E-02 |
| 17 | GO:0016020: membrane | 2.11E-02 |
| 18 | GO:0000786: nucleosome | 2.40E-02 |
| 19 | GO:0005783: endoplasmic reticulum | 2.41E-02 |
| 20 | GO:0005618: cell wall | 2.41E-02 |
| 21 | GO:0005768: endosome | 2.90E-02 |
| 22 | GO:0009506: plasmodesma | 3.38E-02 |
| 23 | GO:0031966: mitochondrial membrane | 3.49E-02 |
| 24 | GO:0043231: intracellular membrane-bounded organelle | 3.59E-02 |
| 25 | GO:0009505: plant-type cell wall | 4.37E-02 |
| 26 | GO:0000139: Golgi membrane | 4.80E-02 |