co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G03990

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0030968: endoplasmic reticulum unfolded protein response	5.92E-07
2	GO:0045732: positive regulation of protein catabolic process	1.33E-05
3	GO:0009150: purine ribonucleotide metabolic process	2.46E-05
4	GO:0071398: cellular response to fatty acid	2.46E-05
5	GO:0006986: response to unfolded protein	3.83E-05
6	GO:0051085: chaperone mediated protein folding requiring cofactor	3.83E-05
7	GO:0072334: UDP-galactose transmembrane transport	3.83E-05
8	GO:0010188: response to microbial phytotoxin	5.40E-05
9	GO:0006457: protein folding	7.58E-05
10	GO:0009553: embryo sac development	9.76E-05
11	GO:0016444: somatic cell DNA recombination	1.11E-04
12	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	1.11E-04
13	GO:0009835: fruit ripening	2.02E-04
14	GO:0046686: response to cadmium ion	2.66E-04
15	GO:0006790: sulfur compound metabolic process	3.06E-04
16	GO:0034976: response to endoplasmic reticulum stress	4.19E-04
17	GO:0006334: nucleosome assembly	5.09E-04
18	GO:0030433: ubiquitin-dependent ERAD pathway	5.39E-04
19	GO:0009693: ethylene biosynthetic process	5.71E-04
20	GO:0000413: protein peptidyl-prolyl isomerization	6.67E-04
21	GO:0006520: cellular amino acid metabolic process	7.00E-04
22	GO:0048868: pollen tube development	7.00E-04
23	GO:0009567: double fertilization forming a zygote and endosperm	9.07E-04
24	GO:0010311: lateral root formation	1.24E-03
25	GO:0000724: double-strand break repair via homologous recombination	1.36E-03
26	GO:0008283: cell proliferation	1.66E-03
27	GO:0000209: protein polyubiquitination	1.70E-03
28	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	1.88E-03
29	GO:0042538: hyperosmotic salinity response	1.93E-03
30	GO:0006486: protein glycosylation	2.02E-03
31	GO:0009620: response to fungus	2.41E-03
32	GO:0009624: response to nematode	2.56E-03
33	GO:0009058: biosynthetic process	3.09E-03
34	GO:0007623: circadian rhythm	3.71E-03
35	GO:0007049: cell cycle	5.38E-03
36	GO:0045454: cell redox homeostasis	6.55E-03
37	GO:0009408: response to heat	7.58E-03
38	GO:0048364: root development	7.80E-03
39	GO:0009753: response to jasmonic acid	7.96E-03
40	GO:0009555: pollen development	1.13E-02
41	GO:0009611: response to wounding	1.15E-02
42	GO:0051301: cell division	1.20E-02
43	GO:0055085: transmembrane transport	1.34E-02
44	GO:0042742: defense response to bacterium	1.87E-02
45	GO:0030154: cell differentiation	1.99E-02
46	GO:0015031: protein transport	2.22E-02
47	GO:0009737: response to abscisic acid	3.21E-02
48	GO:0009793: embryo development ending in seed dormancy	3.40E-02
49	GO:0050832: defense response to fungus	4.07E-02

Rank	GO Term	Adjusted P value
1	GO:0005080: protein kinase C binding	4.83E-06
2	GO:1990381: ubiquitin-specific protease binding	4.83E-06
3	GO:0004121: cystathionine beta-lyase activity	4.83E-06
4	GO:0015165: pyrimidine nucleotide-sugar transmembrane transporter activity	4.83E-06
5	GO:0000030: mannosyltransferase activity	2.46E-05
6	GO:0005460: UDP-glucose transmembrane transporter activity	3.83E-05
7	GO:0047627: adenylylsulfatase activity	3.83E-05
8	GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway	5.40E-05
9	GO:0005459: UDP-galactose transmembrane transporter activity	7.14E-05
10	GO:0051082: unfolded protein binding	1.01E-04
11	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	2.02E-04
12	GO:0008559: xenobiotic-transporting ATPase activity	2.79E-04
13	GO:0031418: L-ascorbic acid binding	4.48E-04
14	GO:0051087: chaperone binding	4.78E-04
15	GO:0003756: protein disulfide isomerase activity	6.03E-04
16	GO:0016853: isomerase activity	7.34E-04
17	GO:0008483: transaminase activity	9.42E-04
18	GO:0042393: histone binding	1.53E-03
19	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.84E-03
20	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.03E-03
21	GO:0016829: lyase activity	3.14E-03
22	GO:0030170: pyridoxal phosphate binding	3.20E-03
23	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	4.36E-03
24	GO:0003682: chromatin binding	5.19E-03
25	GO:0004497: monooxygenase activity	5.79E-03
26	GO:0000166: nucleotide binding	1.13E-02
27	GO:0005507: copper ion binding	1.46E-02
28	GO:0019825: oxygen binding	1.46E-02
29	GO:0005506: iron ion binding	1.85E-02
30	GO:0020037: heme binding	2.59E-02
31	GO:0016787: hydrolase activity	3.22E-02
32	GO:0005524: ATP binding	4.05E-02
33	GO:0008270: zinc ion binding	4.39E-02

Rank	GO Term	Adjusted P value
1	GO:0000836: Hrd1p ubiquitin ligase complex	4.83E-06
2	GO:0044322: endoplasmic reticulum quality control compartment	4.83E-06
3	GO:0036513: Derlin-1 retrotranslocation complex	3.83E-05
4	GO:0030173: integral component of Golgi membrane	1.11E-04
5	GO:0030176: integral component of endoplasmic reticulum membrane	3.90E-04
6	GO:0000325: plant-type vacuole	1.32E-03
7	GO:0005783: endoplasmic reticulum	1.75E-03
8	GO:0005856: cytoskeleton	1.79E-03
9	GO:0005654: nucleoplasm	2.93E-03
10	GO:0009524: phragmoplast	3.09E-03
11	GO:0005759: mitochondrial matrix	3.47E-03
12	GO:0005774: vacuolar membrane	5.97E-03
13	GO:0005777: peroxisome	1.25E-02
14	GO:0009505: plant-type cell wall	2.20E-02
15	GO:0009506: plasmodesma	2.30E-02
16	GO:0005730: nucleolus	2.72E-02
17	GO:0048046: apoplast	4.70E-02
18	GO:0016021: integral component of membrane	4.96E-02