Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G03950

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0034050: host programmed cell death induced by symbiont0.00E+00
2GO:0070328: triglyceride homeostasis0.00E+00
3GO:0006784: heme a biosynthetic process0.00E+00
4GO:0042430: indole-containing compound metabolic process0.00E+00
5GO:0055091: phospholipid homeostasis0.00E+00
6GO:0030149: sphingolipid catabolic process0.00E+00
7GO:0006511: ubiquitin-dependent protein catabolic process3.92E-07
8GO:0030163: protein catabolic process1.16E-05
9GO:0033306: phytol metabolic process4.88E-05
10GO:1902478: negative regulation of defense response to bacterium, incompatible interaction4.88E-05
11GO:1900424: regulation of defense response to bacterium4.88E-05
12GO:0046686: response to cadmium ion6.51E-05
13GO:0045901: positive regulation of translational elongation1.20E-04
14GO:0055088: lipid homeostasis1.20E-04
15GO:0006452: translational frameshifting1.20E-04
16GO:0019752: carboxylic acid metabolic process1.20E-04
17GO:0045905: positive regulation of translational termination1.20E-04
18GO:0006825: copper ion transport1.33E-04
19GO:0055089: fatty acid homeostasis3.01E-04
20GO:0009617: response to bacterium4.01E-04
21GO:0034440: lipid oxidation4.04E-04
22GO:0006461: protein complex assembly5.13E-04
23GO:0006564: L-serine biosynthetic process5.13E-04
24GO:0006121: mitochondrial electron transport, succinate to ubiquinone6.29E-04
25GO:0080086: stamen filament development7.50E-04
26GO:0009094: L-phenylalanine biosynthetic process7.50E-04
27GO:0006099: tricarboxylic acid cycle7.60E-04
28GO:0070370: cellular heat acclimation8.75E-04
29GO:0009061: anaerobic respiration1.01E-03
30GO:0050821: protein stabilization1.01E-03
31GO:0046685: response to arsenic-containing substance1.28E-03
32GO:0009051: pentose-phosphate shunt, oxidative branch1.28E-03
33GO:0019432: triglyceride biosynthetic process1.28E-03
34GO:0046916: cellular transition metal ion homeostasis1.28E-03
35GO:0030042: actin filament depolymerization1.43E-03
36GO:0055062: phosphate ion homeostasis1.59E-03
37GO:0012501: programmed cell death1.91E-03
38GO:0006807: nitrogen compound metabolic process2.08E-03
39GO:0006006: glucose metabolic process2.08E-03
40GO:0034605: cellular response to heat2.26E-03
41GO:0007034: vacuolar transport2.26E-03
42GO:0009901: anther dehiscence2.44E-03
43GO:0046688: response to copper ion2.44E-03
44GO:0000162: tryptophan biosynthetic process2.62E-03
45GO:0006413: translational initiation2.76E-03
46GO:0009695: jasmonic acid biosynthetic process3.01E-03
47GO:0031408: oxylipin biosynthetic process3.20E-03
48GO:0016226: iron-sulfur cluster assembly3.41E-03
49GO:0040007: growth3.61E-03
50GO:0048653: anther development4.26E-03
51GO:0000413: protein peptidyl-prolyl isomerization4.26E-03
52GO:0006520: cellular amino acid metabolic process4.48E-03
53GO:0015986: ATP synthesis coupled proton transport4.71E-03
54GO:0008654: phospholipid biosynthetic process4.94E-03
55GO:0010193: response to ozone5.18E-03
56GO:0046777: protein autophosphorylation6.02E-03
57GO:0044550: secondary metabolite biosynthetic process6.12E-03
58GO:0016579: protein deubiquitination6.42E-03
59GO:0001666: response to hypoxia6.67E-03
60GO:0006950: response to stress7.48E-03
61GO:0010043: response to zinc ion8.88E-03
62GO:0008152: metabolic process9.16E-03
63GO:0030001: metal ion transport1.04E-02
64GO:0055114: oxidation-reduction process1.06E-02
65GO:0008643: carbohydrate transport1.20E-02
66GO:0006855: drug transmembrane transport1.26E-02
67GO:0051603: proteolysis involved in cellular protein catabolic process1.43E-02
68GO:0009738: abscisic acid-activated signaling pathway1.43E-02
69GO:0006952: defense response1.47E-02
70GO:0006417: regulation of translation1.50E-02
71GO:0009909: regulation of flower development1.50E-02
72GO:0009611: response to wounding1.51E-02
73GO:0009624: response to nematode1.79E-02
74GO:0018105: peptidyl-serine phosphorylation1.83E-02
75GO:0006457: protein folding1.92E-02
76GO:0009058: biosynthetic process2.18E-02
77GO:0009845: seed germination2.23E-02
78GO:0040008: regulation of growth2.56E-02
79GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process2.87E-02
80GO:0006979: response to oxidative stress3.02E-02
81GO:0015031: protein transport3.81E-02
82GO:0006970: response to osmotic stress3.81E-02
83GO:0080167: response to karrikin4.21E-02
84GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway4.31E-02
85GO:0045454: cell redox homeostasis4.78E-02
RankGO TermAdjusted P value
1GO:0008117: sphinganine-1-phosphate aldolase activity0.00E+00
2GO:0042171: lysophosphatidic acid acyltransferase activity0.00E+00
3GO:0004298: threonine-type endopeptidase activity2.33E-08
4GO:0008233: peptidase activity3.90E-06
5GO:0004048: anthranilate phosphoribosyltransferase activity4.88E-05
6GO:0004617: phosphoglycerate dehydrogenase activity1.20E-04
7GO:0050403: trans-zeatin O-beta-D-glucosyltransferase activity1.20E-04
8GO:0050502: cis-zeatin O-beta-D-glucosyltransferase activity1.20E-04
9GO:0016531: copper chaperone activity2.06E-04
10GO:0016165: linoleate 13S-lipoxygenase activity2.06E-04
11GO:0004108: citrate (Si)-synthase activity3.01E-04
12GO:0008237: metallopeptidase activity4.00E-04
13GO:0047769: arogenate dehydratase activity4.04E-04
14GO:0004345: glucose-6-phosphate dehydrogenase activity4.04E-04
15GO:0004664: prephenate dehydratase activity4.04E-04
16GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity4.04E-04
17GO:0016597: amino acid binding4.24E-04
18GO:0000104: succinate dehydrogenase activity5.13E-04
19GO:0008177: succinate dehydrogenase (ubiquinone) activity5.13E-04
20GO:0004623: phospholipase A2 activity5.13E-04
21GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity6.29E-04
22GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity6.29E-04
23GO:0005516: calmodulin binding7.06E-04
24GO:0051920: peroxiredoxin activity7.50E-04
25GO:0004144: diacylglycerol O-acyltransferase activity7.50E-04
26GO:0016831: carboxy-lyase activity8.75E-04
27GO:0008121: ubiquinol-cytochrome-c reductase activity8.75E-04
28GO:0051537: 2 iron, 2 sulfur cluster binding9.98E-04
29GO:0016209: antioxidant activity1.01E-03
30GO:0043022: ribosome binding1.01E-03
31GO:0046914: transition metal ion binding1.14E-03
32GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors1.28E-03
33GO:0080043: quercetin 3-O-glucosyltransferase activity1.58E-03
34GO:0080044: quercetin 7-O-glucosyltransferase activity1.58E-03
35GO:0015020: glucuronosyltransferase activity1.59E-03
36GO:0016758: transferase activity, transferring hexosyl groups2.10E-03
37GO:0008266: poly(U) RNA binding2.26E-03
38GO:0030170: pyridoxal phosphate binding2.39E-03
39GO:0004725: protein tyrosine phosphatase activity2.62E-03
40GO:0043424: protein histidine kinase binding3.01E-03
41GO:0036459: thiol-dependent ubiquitinyl hydrolase activity3.20E-03
42GO:0004540: ribonuclease activity3.20E-03
43GO:0008194: UDP-glycosyltransferase activity3.30E-03
44GO:0003743: translation initiation factor activity3.45E-03
45GO:0046933: proton-transporting ATP synthase activity, rotational mechanism4.48E-03
46GO:0004843: thiol-dependent ubiquitin-specific protease activity5.18E-03
47GO:0005215: transporter activity6.68E-03
48GO:0009931: calcium-dependent protein serine/threonine kinase activity7.20E-03
49GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen7.28E-03
50GO:0004683: calmodulin-dependent protein kinase activity7.48E-03
51GO:0004721: phosphoprotein phosphatase activity7.48E-03
52GO:0015238: drug transmembrane transporter activity8.31E-03
53GO:0003924: GTPase activity8.31E-03
54GO:0050897: cobalt ion binding8.88E-03
55GO:0003746: translation elongation factor activity9.47E-03
56GO:0050661: NADP binding1.04E-02
57GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.26E-02
58GO:0051287: NAD binding1.30E-02
59GO:0016298: lipase activity1.43E-02
60GO:0003779: actin binding1.76E-02
61GO:0016746: transferase activity, transferring acyl groups1.83E-02
62GO:0005507: copper ion binding2.11E-02
63GO:0019825: oxygen binding2.11E-02
64GO:0005525: GTP binding2.44E-02
65GO:0015297: antiporter activity2.56E-02
66GO:0005351: sugar:proton symporter activity2.60E-02
67GO:0005506: iron ion binding2.95E-02
68GO:0004601: peroxidase activity3.61E-02
69GO:0043531: ADP binding3.86E-02
70GO:0050660: flavin adenine dinucleotide binding4.01E-02
71GO:0004497: monooxygenase activity4.21E-02
72GO:0020037: heme binding4.71E-02
RankGO TermAdjusted P value
1GO:0000502: proteasome complex1.03E-09
2GO:0005839: proteasome core complex2.33E-08
3GO:0019773: proteasome core complex, alpha-subunit complex1.40E-07
4GO:0030139: endocytic vesicle5.64E-07
5GO:0008541: proteasome regulatory particle, lid subcomplex5.27E-05
6GO:0005829: cytosol1.02E-04
7GO:0005758: mitochondrial intermembrane space1.20E-04
8GO:0032585: multivesicular body membrane3.01E-04
9GO:0005886: plasma membrane3.61E-04
10GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)4.04E-04
11GO:0005737: cytoplasm4.70E-04
12GO:0045273: respiratory chain complex II1.01E-03
13GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)1.01E-03
14GO:0031901: early endosome membrane1.28E-03
15GO:0005774: vacuolar membrane1.73E-03
16GO:0005750: mitochondrial respiratory chain complex III2.26E-03
17GO:0005753: mitochondrial proton-transporting ATP synthase complex2.44E-03
18GO:0005769: early endosome2.62E-03
19GO:0015629: actin cytoskeleton3.61E-03
20GO:0009507: chloroplast4.15E-03
21GO:0000785: chromatin5.42E-03
22GO:0005783: endoplasmic reticulum5.91E-03
23GO:0005618: cell wall8.83E-03
24GO:0031902: late endosome membrane1.07E-02
25GO:0016020: membrane1.37E-02
26GO:0022626: cytosolic ribosome1.41E-02
27GO:0005747: mitochondrial respiratory chain complex I1.61E-02
28GO:0009570: chloroplast stroma1.88E-02
29GO:0010287: plastoglobule2.02E-02
30GO:0005759: mitochondrial matrix2.47E-02
31GO:0005768: endosome2.70E-02
Gene type



Gene DE type