co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G03440

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0098755: maintenance of seed dormancy by absisic acid	0.00E+00
2	GO:0043201: response to leucine	0.00E+00
3	GO:0006105: succinate metabolic process	0.00E+00
4	GO:0080052: response to histidine	0.00E+00
5	GO:0080053: response to phenylalanine	0.00E+00
6	GO:0019484: beta-alanine catabolic process	0.00E+00
7	GO:0006983: ER overload response	0.00E+00
8	GO:0033587: shikimate biosynthetic process	0.00E+00
9	GO:0051238: sequestering of metal ion	0.00E+00
10	GO:0009448: gamma-aminobutyric acid metabolic process	0.00E+00
11	GO:0006592: ornithine biosynthetic process	0.00E+00
12	GO:0043066: negative regulation of apoptotic process	1.19E-06
13	GO:0006536: glutamate metabolic process	1.93E-05
14	GO:1900425: negative regulation of defense response to bacterium	4.69E-05
15	GO:0009450: gamma-aminobutyric acid catabolic process	1.56E-04
16	GO:0099132: ATP hydrolysis coupled cation transmembrane transport	1.56E-04
17	GO:0010184: cytokinin transport	1.56E-04
18	GO:0009865: pollen tube adhesion	1.56E-04
19	GO:0006540: glutamate decarboxylation to succinate	1.56E-04
20	GO:1903648: positive regulation of chlorophyll catabolic process	1.56E-04
21	GO:0043069: negative regulation of programmed cell death	2.46E-04
22	GO:0009407: toxin catabolic process	3.03E-04
23	GO:0010033: response to organic substance	3.55E-04
24	GO:0009866: induced systemic resistance, ethylene mediated signaling pathway	3.55E-04
25	GO:0006212: uracil catabolic process	3.55E-04
26	GO:0060919: auxin influx	3.55E-04
27	GO:0019483: beta-alanine biosynthetic process	3.55E-04
28	GO:0015865: purine nucleotide transport	3.55E-04
29	GO:0042939: tripeptide transport	3.55E-04
30	GO:0019441: tryptophan catabolic process to kynurenine	3.55E-04
31	GO:0010476: gibberellin mediated signaling pathway	5.82E-04
32	GO:0010325: raffinose family oligosaccharide biosynthetic process	5.82E-04
33	GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway	5.82E-04
34	GO:0009062: fatty acid catabolic process	5.82E-04
35	GO:0009636: response to toxic substance	5.85E-04
36	GO:0006855: drug transmembrane transport	6.13E-04
37	GO:0009809: lignin biosynthetic process	7.34E-04
38	GO:0042742: defense response to bacterium	8.06E-04
39	GO:0006020: inositol metabolic process	8.33E-04
40	GO:0046902: regulation of mitochondrial membrane permeability	8.33E-04
41	GO:0072334: UDP-galactose transmembrane transport	8.33E-04
42	GO:0071786: endoplasmic reticulum tubular network organization	8.33E-04
43	GO:0009620: response to fungus	1.01E-03
44	GO:0046777: protein autophosphorylation	1.05E-03
45	GO:0009939: positive regulation of gibberellic acid mediated signaling pathway	1.10E-03
46	GO:0042938: dipeptide transport	1.10E-03
47	GO:0010256: endomembrane system organization	1.72E-03
48	GO:0010315: auxin efflux	1.72E-03
49	GO:0006014: D-ribose metabolic process	1.72E-03
50	GO:0015691: cadmium ion transport	1.72E-03
51	GO:0006388: tRNA splicing, via endonucleolytic cleavage and ligation	1.72E-03
52	GO:0046686: response to cadmium ion	1.93E-03
53	GO:0006694: steroid biosynthetic process	2.06E-03
54	GO:0098655: cation transmembrane transport	2.06E-03
55	GO:0048444: floral organ morphogenesis	2.06E-03
56	GO:0050829: defense response to Gram-negative bacterium	2.42E-03
57	GO:1900057: positive regulation of leaf senescence	2.42E-03
58	GO:0010161: red light signaling pathway	2.42E-03
59	GO:1900150: regulation of defense response to fungus	2.80E-03
60	GO:0006526: arginine biosynthetic process	3.21E-03
61	GO:0043562: cellular response to nitrogen levels	3.21E-03
62	GO:0006098: pentose-phosphate shunt	3.63E-03
63	GO:0009821: alkaloid biosynthetic process	3.63E-03
64	GO:0090333: regulation of stomatal closure	3.63E-03
65	GO:0009056: catabolic process	3.63E-03
66	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	4.06E-03
67	GO:0071577: zinc II ion transmembrane transport	4.06E-03
68	GO:0010162: seed dormancy process	4.52E-03
69	GO:0009688: abscisic acid biosynthetic process	4.52E-03
70	GO:0000038: very long-chain fatty acid metabolic process	4.99E-03
71	GO:0043085: positive regulation of catalytic activity	4.99E-03
72	GO:0006812: cation transport	5.28E-03
73	GO:0000266: mitochondrial fission	5.48E-03
74	GO:0006807: nitrogen compound metabolic process	5.98E-03
75	GO:0055046: microgametogenesis	5.98E-03
76	GO:0006541: glutamine metabolic process	6.50E-03
77	GO:0010540: basipetal auxin transport	6.50E-03
78	GO:0010167: response to nitrate	7.04E-03
79	GO:0005985: sucrose metabolic process	7.04E-03
80	GO:0070588: calcium ion transmembrane transport	7.04E-03
81	GO:0006863: purine nucleobase transport	7.59E-03
82	GO:0016042: lipid catabolic process	8.16E-03
83	GO:0009751: response to salicylic acid	8.31E-03
84	GO:0006952: defense response	8.40E-03
85	GO:0006874: cellular calcium ion homeostasis	8.74E-03
86	GO:0016998: cell wall macromolecule catabolic process	9.34E-03
87	GO:0071456: cellular response to hypoxia	9.96E-03
88	GO:0009845: seed germination	1.09E-02
89	GO:0009561: megagametogenesis	1.12E-02
90	GO:0010154: fruit development	1.32E-02
91	GO:0006885: regulation of pH	1.32E-02
92	GO:0006623: protein targeting to vacuole	1.46E-02
93	GO:0010183: pollen tube guidance	1.46E-02
94	GO:0009749: response to glucose	1.46E-02
95	GO:0019252: starch biosynthetic process	1.46E-02
96	GO:0002229: defense response to oomycetes	1.54E-02
97	GO:0000302: response to reactive oxygen species	1.54E-02
98	GO:0006635: fatty acid beta-oxidation	1.54E-02
99	GO:0009630: gravitropism	1.61E-02
100	GO:1901657: glycosyl compound metabolic process	1.68E-02
101	GO:0016126: sterol biosynthetic process	1.99E-02
102	GO:0009615: response to virus	1.99E-02
103	GO:0010029: regulation of seed germination	2.07E-02
104	GO:0009627: systemic acquired resistance	2.16E-02
105	GO:0006950: response to stress	2.24E-02
106	GO:0009817: defense response to fungus, incompatible interaction	2.41E-02
107	GO:0048767: root hair elongation	2.50E-02
108	GO:0009813: flavonoid biosynthetic process	2.50E-02
109	GO:0009723: response to ethylene	2.51E-02
110	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.78E-02
111	GO:0016192: vesicle-mediated transport	2.83E-02
112	GO:0016051: carbohydrate biosynthetic process	2.85E-02
113	GO:0006839: mitochondrial transport	3.13E-02
114	GO:0055114: oxidation-reduction process	3.40E-02
115	GO:0051707: response to other organism	3.42E-02
116	GO:0009926: auxin polar transport	3.42E-02
117	GO:0031347: regulation of defense response	3.91E-02
118	GO:0042538: hyperosmotic salinity response	4.01E-02
119	GO:0048364: root development	4.13E-02
120	GO:0006468: protein phosphorylation	4.20E-02
121	GO:0006813: potassium ion transport	4.22E-02
122	GO:0009753: response to jasmonic acid	4.24E-02
123	GO:0006979: response to oxidative stress	4.26E-02
124	GO:0006857: oligopeptide transport	4.43E-02
125	GO:0048367: shoot system development	4.86E-02
126	GO:0009626: plant-type hypersensitive response	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0032442: phenylcoumaran benzylic ether reductase activity	0.00E+00
2	GO:0003837: beta-ureidopropionase activity	0.00E+00
3	GO:0019211: phosphatase activator activity	0.00E+00
4	GO:0034387: 4-aminobutyrate:pyruvate transaminase activity	0.00E+00
5	GO:0008777: acetylornithine deacetylase activity	0.00E+00
6	GO:0015211: purine nucleoside transmembrane transporter activity	0.00E+00
7	GO:0052747: sinapyl alcohol dehydrogenase activity	1.13E-04
8	GO:0008809: carnitine racemase activity	1.56E-04
9	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	1.56E-04
10	GO:0004112: cyclic-nucleotide phosphodiesterase activity	1.56E-04
11	GO:0003867: 4-aminobutyrate transaminase activity	1.56E-04
12	GO:0046964: 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity	1.56E-04
13	GO:0015238: drug transmembrane transporter activity	2.84E-04
14	GO:0045551: cinnamyl-alcohol dehydrogenase activity	3.29E-04
15	GO:0047012: sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity	3.55E-04
16	GO:0004061: arylformamidase activity	3.55E-04
17	GO:0015036: disulfide oxidoreductase activity	3.55E-04
18	GO:0042937: tripeptide transporter activity	3.55E-04
19	GO:0010331: gibberellin binding	3.55E-04
20	GO:0004364: glutathione transferase activity	4.79E-04
21	GO:0003854: 3-beta-hydroxy-delta5-steroid dehydrogenase activity	5.82E-04
22	GO:0000975: regulatory region DNA binding	5.82E-04
23	GO:0004165: dodecenoyl-CoA delta-isomerase activity	8.33E-04
24	GO:0004351: glutamate decarboxylase activity	8.33E-04
25	GO:0042936: dipeptide transporter activity	1.10E-03
26	GO:0010328: auxin influx transmembrane transporter activity	1.10E-03
27	GO:0009916: alternative oxidase activity	1.10E-03
28	GO:0045431: flavonol synthase activity	1.40E-03
29	GO:0005459: UDP-galactose transmembrane transporter activity	1.40E-03
30	GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity	1.40E-03
31	GO:0005471: ATP:ADP antiporter activity	1.40E-03
32	GO:0004866: endopeptidase inhibitor activity	1.72E-03
33	GO:0004012: phospholipid-translocating ATPase activity	2.06E-03
34	GO:0004747: ribokinase activity	2.06E-03
35	GO:0015297: antiporter activity	2.13E-03
36	GO:0004674: protein serine/threonine kinase activity	2.24E-03
37	GO:0102425: myricetin 3-O-glucosyltransferase activity	2.42E-03
38	GO:0102360: daphnetin 3-O-glucosyltransferase activity	2.42E-03
39	GO:0008865: fructokinase activity	2.80E-03
40	GO:0047893: flavonol 3-O-glucosyltransferase activity	2.80E-03
41	GO:0071949: FAD binding	3.63E-03
42	GO:0016844: strictosidine synthase activity	4.06E-03
43	GO:0008559: xenobiotic-transporting ATPase activity	4.99E-03
44	GO:0004497: monooxygenase activity	5.15E-03
45	GO:0016298: lipase activity	5.86E-03
46	GO:0005388: calcium-transporting ATPase activity	5.98E-03
47	GO:0010329: auxin efflux transmembrane transporter activity	5.98E-03
48	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	5.98E-03
49	GO:0005217: intracellular ligand-gated ion channel activity	7.04E-03
50	GO:0004970: ionotropic glutamate receptor activity	7.04E-03
51	GO:0005516: calmodulin binding	7.58E-03
52	GO:0005385: zinc ion transmembrane transporter activity	8.16E-03
53	GO:0005345: purine nucleobase transmembrane transporter activity	8.74E-03
54	GO:0008324: cation transmembrane transporter activity	8.74E-03
55	GO:0035251: UDP-glucosyltransferase activity	9.34E-03
56	GO:0005524: ATP binding	1.12E-02
57	GO:0004499: N,N-dimethylaniline monooxygenase activity	1.12E-02
58	GO:0030170: pyridoxal phosphate binding	1.12E-02
59	GO:0016787: hydrolase activity	1.19E-02
60	GO:0005451: monovalent cation:proton antiporter activity	1.25E-02
61	GO:0046873: metal ion transmembrane transporter activity	1.32E-02
62	GO:0005215: transporter activity	1.38E-02
63	GO:0015299: solute:proton antiporter activity	1.39E-02
64	GO:0016301: kinase activity	1.68E-02
65	GO:0015385: sodium:proton antiporter activity	1.68E-02
66	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.78E-02
67	GO:0008237: metallopeptidase activity	1.84E-02
68	GO:0008375: acetylglucosaminyltransferase activity	2.16E-02
69	GO:0102483: scopolin beta-glucosidase activity	2.24E-02
70	GO:0004222: metalloendopeptidase activity	2.58E-02
71	GO:0046872: metal ion binding	2.64E-02
72	GO:0050897: cobalt ion binding	2.67E-02
73	GO:0052689: carboxylic ester hydrolase activity	2.97E-02
74	GO:0008422: beta-glucosidase activity	3.04E-02
75	GO:0050661: NADP binding	3.13E-02
76	GO:0005525: GTP binding	3.27E-02
77	GO:0051537: 2 iron, 2 sulfur cluster binding	3.61E-02
78	GO:0003924: GTPase activity	3.96E-02
79	GO:0045330: aspartyl esterase activity	4.54E-02
80	GO:0045735: nutrient reservoir activity	4.75E-02

Rank	GO Term	Adjusted P value
1	GO:0031314: extrinsic component of mitochondrial inner membrane	3.55E-04
2	GO:0071782: endoplasmic reticulum tubular network	8.33E-04
3	GO:0005770: late endosome	1.13E-03
4	GO:0000164: protein phosphatase type 1 complex	1.40E-03
5	GO:0030173: integral component of Golgi membrane	2.06E-03
6	GO:0005886: plasma membrane	2.09E-03
7	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	2.80E-03
8	GO:0016021: integral component of membrane	4.14E-03
9	GO:0090404: pollen tube tip	4.99E-03
10	GO:0005789: endoplasmic reticulum membrane	6.59E-03
11	GO:0030176: integral component of endoplasmic reticulum membrane	7.04E-03
12	GO:0005743: mitochondrial inner membrane	7.71E-03
13	GO:0070469: respiratory chain	8.74E-03
14	GO:0005737: cytoplasm	1.31E-02
15	GO:0005783: endoplasmic reticulum	1.37E-02
16	GO:0071944: cell periphery	1.68E-02
17	GO:0005777: peroxisome	2.09E-02
18	GO:0031902: late endosome membrane	3.22E-02
19	GO:0005618: cell wall	3.36E-02
20	GO:0043231: intracellular membrane-bounded organelle	4.36E-02
21	GO:0005635: nuclear envelope	4.43E-02