co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G03220

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0007638: mechanosensory behavior	0.00E+00
2	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
3	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
4	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
5	GO:0006418: tRNA aminoacylation for protein translation	1.97E-05
6	GO:0032543: mitochondrial translation	2.24E-05
7	GO:0016031: tRNA import into mitochondrion	1.27E-04
8	GO:0055114: oxidation-reduction process	2.04E-04
9	GO:0006568: tryptophan metabolic process	2.94E-04
10	GO:0009735: response to cytokinin	4.75E-04
11	GO:0010581: regulation of starch biosynthetic process	4.86E-04
12	GO:0006518: peptide metabolic process	4.86E-04
13	GO:0006433: prolyl-tRNA aminoacylation	4.86E-04
14	GO:0071492: cellular response to UV-A	4.86E-04
15	GO:0006065: UDP-glucuronate biosynthetic process	4.86E-04
16	GO:0006165: nucleoside diphosphate phosphorylation	6.95E-04
17	GO:0006228: UTP biosynthetic process	6.95E-04
18	GO:0010088: phloem development	6.95E-04
19	GO:0006424: glutamyl-tRNA aminoacylation	6.95E-04
20	GO:0006986: response to unfolded protein	6.95E-04
21	GO:0007231: osmosensory signaling pathway	6.95E-04
22	GO:0051085: chaperone mediated protein folding requiring cofactor	6.95E-04
23	GO:0006241: CTP biosynthetic process	6.95E-04
24	GO:0016117: carotenoid biosynthetic process	7.51E-04
25	GO:0015979: photosynthesis	7.60E-04
26	GO:0045454: cell redox homeostasis	8.16E-04
27	GO:0033500: carbohydrate homeostasis	9.21E-04
28	GO:0006546: glycine catabolic process	9.21E-04
29	GO:0010109: regulation of photosynthesis	9.21E-04
30	GO:0071486: cellular response to high light intensity	9.21E-04
31	GO:0009765: photosynthesis, light harvesting	9.21E-04
32	GO:0006183: GTP biosynthetic process	9.21E-04
33	GO:0048359: mucilage metabolic process involved in seed coat development	1.16E-03
34	GO:0016120: carotene biosynthetic process	1.16E-03
35	GO:0006564: L-serine biosynthetic process	1.16E-03
36	GO:0016123: xanthophyll biosynthetic process	1.16E-03
37	GO:0008152: metabolic process	1.29E-03
38	GO:0006796: phosphate-containing compound metabolic process	1.43E-03
39	GO:0033365: protein localization to organelle	1.43E-03
40	GO:0009635: response to herbicide	1.43E-03
41	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.43E-03
42	GO:0006555: methionine metabolic process	1.43E-03
43	GO:0016554: cytidine to uridine editing	1.43E-03
44	GO:0010027: thylakoid membrane organization	1.51E-03
45	GO:0009854: oxidative photosynthetic carbon pathway	1.71E-03
46	GO:0015995: chlorophyll biosynthetic process	1.78E-03
47	GO:0048481: plant ovule development	1.97E-03
48	GO:0006400: tRNA modification	2.01E-03
49	GO:0009819: drought recovery	2.32E-03
50	GO:0009657: plastid organization	2.65E-03
51	GO:0019430: removal of superoxide radicals	2.65E-03
52	GO:0032544: plastid translation	2.65E-03
53	GO:0009658: chloroplast organization	2.75E-03
54	GO:0006631: fatty acid metabolic process	2.94E-03
55	GO:0010206: photosystem II repair	3.00E-03
56	GO:0048589: developmental growth	3.00E-03
57	GO:0010380: regulation of chlorophyll biosynthetic process	3.36E-03
58	GO:0035999: tetrahydrofolate interconversion	3.36E-03
59	GO:1900865: chloroplast RNA modification	3.36E-03
60	GO:0006949: syncytium formation	3.73E-03
61	GO:0010192: mucilage biosynthetic process	3.73E-03
62	GO:0006415: translational termination	4.12E-03
63	GO:0009073: aromatic amino acid family biosynthetic process	4.12E-03
64	GO:0043085: positive regulation of catalytic activity	4.12E-03
65	GO:0006816: calcium ion transport	4.12E-03
66	GO:0010020: chloroplast fission	5.36E-03
67	GO:0010207: photosystem II assembly	5.36E-03
68	GO:0007034: vacuolar transport	5.36E-03
69	GO:0070588: calcium ion transmembrane transport	5.80E-03
70	GO:0019762: glucosinolate catabolic process	6.25E-03
71	GO:0007010: cytoskeleton organization	6.71E-03
72	GO:0007017: microtubule-based process	7.19E-03
73	GO:0009768: photosynthesis, light harvesting in photosystem I	7.19E-03
74	GO:0042742: defense response to bacterium	7.74E-03
75	GO:0071555: cell wall organization	7.74E-03
76	GO:0006730: one-carbon metabolic process	8.18E-03
77	GO:0007005: mitochondrion organization	8.18E-03
78	GO:0030245: cellulose catabolic process	8.18E-03
79	GO:0009294: DNA mediated transformation	8.69E-03
80	GO:0009411: response to UV	8.69E-03
81	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	8.69E-03
82	GO:0019722: calcium-mediated signaling	9.21E-03
83	GO:0042335: cuticle development	1.03E-02
84	GO:0007018: microtubule-based movement	1.14E-02
85	GO:0009828: plant-type cell wall loosening	1.44E-02
86	GO:0007267: cell-cell signaling	1.50E-02
87	GO:0018298: protein-chromophore linkage	1.97E-02
88	GO:0009817: defense response to fungus, incompatible interaction	1.97E-02
89	GO:0048767: root hair elongation	2.04E-02
90	GO:0000160: phosphorelay signal transduction system	2.04E-02
91	GO:0009813: flavonoid biosynthetic process	2.04E-02
92	GO:0009407: toxin catabolic process	2.11E-02
93	GO:0010218: response to far red light	2.11E-02
94	GO:0009637: response to blue light	2.33E-02
95	GO:0009853: photorespiration	2.33E-02
96	GO:0006839: mitochondrial transport	2.56E-02
97	GO:0006869: lipid transport	2.66E-02
98	GO:0042542: response to hydrogen peroxide	2.72E-02
99	GO:0010114: response to red light	2.80E-02
100	GO:0009644: response to high light intensity	2.96E-02
101	GO:0009664: plant-type cell wall organization	3.29E-02
102	GO:0009809: lignin biosynthetic process	3.46E-02
103	GO:0006364: rRNA processing	3.46E-02
104	GO:0009585: red, far-red light phototransduction	3.46E-02
105	GO:0009736: cytokinin-activated signaling pathway	3.46E-02
106	GO:0051603: proteolysis involved in cellular protein catabolic process	3.54E-02
107	GO:0048316: seed development	3.98E-02
108	GO:0015031: protein transport	4.01E-02
109	GO:0006508: proteolysis	4.11E-02
110	GO:0009409: response to cold	4.33E-02
111	GO:0042545: cell wall modification	4.35E-02
112	GO:0009553: embryo sac development	4.35E-02

Rank	GO Term	Adjusted P value
1	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
2	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
3	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
4	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
5	GO:0008887: glycerate kinase activity	0.00E+00
6	GO:0004823: leucine-tRNA ligase activity	0.00E+00
7	GO:0009974: zeinoxanthin epsilon hydroxylase activity	0.00E+00
8	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	0.00E+00
9	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
10	GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity	0.00E+00
11	GO:0051920: peroxiredoxin activity	3.73E-07
12	GO:0016209: antioxidant activity	9.44E-07
13	GO:0002161: aminoacyl-tRNA editing activity	3.08E-06
14	GO:0004812: aminoacyl-tRNA ligase activity	4.04E-05
15	GO:0051753: mannan synthase activity	4.74E-05
16	GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity	1.27E-04
17	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	1.27E-04
18	GO:0004425: indole-3-glycerol-phosphate synthase activity	1.27E-04
19	GO:0004560: alpha-L-fucosidase activity	1.27E-04
20	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	1.27E-04
21	GO:0004565: beta-galactosidase activity	2.83E-04
22	GO:0016630: protochlorophyllide reductase activity	2.94E-04
23	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	2.94E-04
24	GO:0004617: phosphoglycerate dehydrogenase activity	2.94E-04
25	GO:0004047: aminomethyltransferase activity	2.94E-04
26	GO:0004148: dihydrolipoyl dehydrogenase activity	4.86E-04
27	GO:0005504: fatty acid binding	4.86E-04
28	GO:0030267: glyoxylate reductase (NADP) activity	4.86E-04
29	GO:0003979: UDP-glucose 6-dehydrogenase activity	4.86E-04
30	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	4.86E-04
31	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	4.86E-04
32	GO:0004827: proline-tRNA ligase activity	4.86E-04
33	GO:0070330: aromatase activity	4.86E-04
34	GO:0016149: translation release factor activity, codon specific	6.95E-04
35	GO:0004550: nucleoside diphosphate kinase activity	6.95E-04
36	GO:0045430: chalcone isomerase activity	9.21E-04
37	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	9.21E-04
38	GO:1990137: plant seed peroxidase activity	9.21E-04
39	GO:0016773: phosphotransferase activity, alcohol group as acceptor	1.16E-03
40	GO:0003959: NADPH dehydrogenase activity	1.16E-03
41	GO:0018685: alkane 1-monooxygenase activity	1.16E-03
42	GO:0005200: structural constituent of cytoskeleton	1.35E-03
43	GO:0016462: pyrophosphatase activity	1.43E-03
44	GO:0016168: chlorophyll binding	1.60E-03
45	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	1.71E-03
46	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	1.71E-03
47	GO:0102425: myricetin 3-O-glucosyltransferase activity	2.01E-03
48	GO:0102360: daphnetin 3-O-glucosyltransferase activity	2.01E-03
49	GO:0004427: inorganic diphosphatase activity	2.01E-03
50	GO:0004033: aldo-keto reductase (NADP) activity	2.32E-03
51	GO:0047893: flavonol 3-O-glucosyltransferase activity	2.32E-03
52	GO:0052747: sinapyl alcohol dehydrogenase activity	2.32E-03
53	GO:0000287: magnesium ion binding	2.68E-03
54	GO:0004601: peroxidase activity	2.75E-03
55	GO:0016788: hydrolase activity, acting on ester bonds	2.81E-03
56	GO:0003747: translation release factor activity	3.00E-03
57	GO:0047617: acyl-CoA hydrolase activity	3.36E-03
58	GO:0043621: protein self-association	3.45E-03
59	GO:0030234: enzyme regulator activity	3.73E-03
60	GO:0008047: enzyme activator activity	3.73E-03
61	GO:0051287: NAD binding	3.85E-03
62	GO:0052689: carboxylic ester hydrolase activity	4.10E-03
63	GO:0000049: tRNA binding	4.52E-03
64	GO:0045551: cinnamyl-alcohol dehydrogenase activity	4.52E-03
65	GO:0015266: protein channel activity	4.93E-03
66	GO:0005262: calcium channel activity	4.93E-03
67	GO:0080043: quercetin 3-O-glucosyltransferase activity	5.56E-03
68	GO:0080044: quercetin 7-O-glucosyltransferase activity	5.56E-03
69	GO:0003924: GTPase activity	5.91E-03
70	GO:0031409: pigment binding	6.25E-03
71	GO:0004857: enzyme inhibitor activity	6.71E-03
72	GO:0051087: chaperone binding	7.19E-03
73	GO:0008810: cellulase activity	8.69E-03
74	GO:0022891: substrate-specific transmembrane transporter activity	8.69E-03
75	GO:0008289: lipid binding	9.00E-03
76	GO:0004791: thioredoxin-disulfide reductase activity	1.14E-02
77	GO:0016491: oxidoreductase activity	1.17E-02
78	GO:0008194: UDP-glycosyltransferase activity	1.18E-02
79	GO:0000156: phosphorelay response regulator activity	1.38E-02
80	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.38E-02
81	GO:0008483: transaminase activity	1.50E-02
82	GO:0016597: amino acid binding	1.57E-02
83	GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding	1.90E-02
84	GO:0008236: serine-type peptidase activity	1.90E-02
85	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.97E-02
86	GO:0004222: metalloendopeptidase activity	2.11E-02
87	GO:0030145: manganese ion binding	2.19E-02
88	GO:0005525: GTP binding	2.30E-02
89	GO:0003746: translation elongation factor activity	2.33E-02
90	GO:0000987: core promoter proximal region sequence-specific DNA binding	2.41E-02
91	GO:0051539: 4 iron, 4 sulfur cluster binding	2.56E-02
92	GO:0004364: glutathione transferase activity	2.72E-02
93	GO:0004185: serine-type carboxypeptidase activity	2.80E-02
94	GO:0005198: structural molecule activity	3.04E-02
95	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.12E-02
96	GO:0009055: electron carrier activity	3.21E-02
97	GO:0045330: aspartyl esterase activity	3.72E-02
98	GO:0003777: microtubule motor activity	3.72E-02
99	GO:0045735: nutrient reservoir activity	3.89E-02
100	GO:0004650: polygalacturonase activity	4.16E-02
101	GO:0030599: pectinesterase activity	4.26E-02
102	GO:0051082: unfolded protein binding	4.44E-02
103	GO:0016757: transferase activity, transferring glycosyl groups	4.75E-02

Rank	GO Term	Adjusted P value
1	GO:0009571: proplastid stroma	0.00E+00
2	GO:0009570: chloroplast stroma	5.59E-21
3	GO:0009507: chloroplast	2.63E-18
4	GO:0009941: chloroplast envelope	3.93E-12
5	GO:0048046: apoplast	6.47E-07
6	GO:0009534: chloroplast thylakoid	1.90E-06
7	GO:0009505: plant-type cell wall	2.60E-05
8	GO:0009543: chloroplast thylakoid lumen	1.27E-04
9	GO:0017101: aminoacyl-tRNA synthetase multienzyme complex	1.27E-04
10	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	1.27E-04
11	GO:0046658: anchored component of plasma membrane	3.50E-04
12	GO:0005853: eukaryotic translation elongation factor 1 complex	4.86E-04
13	GO:0005874: microtubule	5.90E-04
14	GO:0009535: chloroplast thylakoid membrane	6.28E-04
15	GO:0009579: thylakoid	7.64E-04
16	GO:0010319: stromule	1.35E-03
17	GO:0000815: ESCRT III complex	1.71E-03
18	GO:0009533: chloroplast stromal thylakoid	2.01E-03
19	GO:0005618: cell wall	2.19E-03
20	GO:0005811: lipid particle	2.65E-03
21	GO:0031977: thylakoid lumen	2.94E-03
22	GO:0045298: tubulin complex	3.00E-03
23	GO:0030076: light-harvesting complex	5.80E-03
24	GO:0005875: microtubule associated complex	6.25E-03
25	GO:0042651: thylakoid membrane	7.19E-03
26	GO:0010287: plastoglobule	7.22E-03
27	GO:0009532: plastid stroma	7.68E-03
28	GO:0015935: small ribosomal subunit	7.68E-03
29	GO:0005744: mitochondrial inner membrane presequence translocase complex	9.21E-03
30	GO:0005871: kinesin complex	9.75E-03
31	GO:0009536: plastid	1.05E-02
32	GO:0009522: photosystem I	1.14E-02
33	GO:0009523: photosystem II	1.20E-02
34	GO:0031969: chloroplast membrane	2.03E-02
35	GO:0005856: cytoskeleton	3.04E-02
36	GO:0043231: intracellular membrane-bounded organelle	3.30E-02
37	GO:0009706: chloroplast inner membrane	4.44E-02