co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G03000

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1901972: positive regulation of DNA-5-methylcytosine glycosylase activity	0.00E+00
2	GO:0017186: peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase	0.00E+00
3	GO:0010360: negative regulation of anion channel activity	0.00E+00
4	GO:0006987: activation of signaling protein activity involved in unfolded protein response	0.00E+00
5	GO:1901017: negative regulation of potassium ion transmembrane transporter activity	0.00E+00
6	GO:0010398: xylogalacturonan metabolic process	0.00E+00
7	GO:0033542: fatty acid beta-oxidation, unsaturated, even number	0.00E+00
8	GO:1901969: positive regulation of polynucleotide 3'-phosphatase activity	0.00E+00
9	GO:0006182: cGMP biosynthetic process	0.00E+00
10	GO:0006266: DNA ligation	0.00E+00
11	GO:0000162: tryptophan biosynthetic process	1.29E-08
12	GO:0009617: response to bacterium	8.41E-07
13	GO:0019438: aromatic compound biosynthetic process	1.66E-05
14	GO:0010107: potassium ion import	3.05E-05
15	GO:0071456: cellular response to hypoxia	7.44E-05
16	GO:0055114: oxidation-reduction process	8.90E-05
17	GO:0042742: defense response to bacterium	1.04E-04
18	GO:0006468: protein phosphorylation	1.15E-04
19	GO:0009851: auxin biosynthetic process	1.68E-04
20	GO:0009623: response to parasitic fungus	2.04E-04
21	GO:0051245: negative regulation of cellular defense response	2.04E-04
22	GO:0009700: indole phytoalexin biosynthetic process	2.04E-04
23	GO:1901183: positive regulation of camalexin biosynthetic process	2.04E-04
24	GO:1902361: mitochondrial pyruvate transmembrane transport	2.04E-04
25	GO:0010120: camalexin biosynthetic process	2.11E-04
26	GO:0009808: lignin metabolic process	2.11E-04
27	GO:0090333: regulation of stomatal closure	2.57E-04
28	GO:0043069: negative regulation of programmed cell death	3.60E-04
29	GO:0009682: induced systemic resistance	4.16E-04
30	GO:0052544: defense response by callose deposition in cell wall	4.16E-04
31	GO:0009817: defense response to fungus, incompatible interaction	4.35E-04
32	GO:0002215: defense response to nematode	4.57E-04
33	GO:0009727: detection of ethylene stimulus	4.57E-04
34	GO:0007584: response to nutrient	4.57E-04
35	GO:0006850: mitochondrial pyruvate transport	4.57E-04
36	GO:0015865: purine nucleotide transport	4.57E-04
37	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	4.57E-04
38	GO:0052542: defense response by callose deposition	4.57E-04
39	GO:0060919: auxin influx	4.57E-04
40	GO:0019441: tryptophan catabolic process to kynurenine	4.57E-04
41	GO:0042343: indole glucosinolate metabolic process	6.82E-04
42	GO:0071398: cellular response to fatty acid	7.44E-04
43	GO:0002239: response to oomycetes	1.06E-03
44	GO:0046902: regulation of mitochondrial membrane permeability	1.06E-03
45	GO:0072334: UDP-galactose transmembrane transport	1.06E-03
46	GO:0006612: protein targeting to membrane	1.06E-03
47	GO:0009399: nitrogen fixation	1.06E-03
48	GO:0010116: positive regulation of abscisic acid biosynthetic process	1.06E-03
49	GO:0006813: potassium ion transport	1.17E-03
50	GO:1902584: positive regulation of response to water deprivation	1.41E-03
51	GO:0010363: regulation of plant-type hypersensitive response	1.41E-03
52	GO:0010600: regulation of auxin biosynthetic process	1.41E-03
53	GO:0006542: glutamine biosynthetic process	1.41E-03
54	GO:0009414: response to water deprivation	1.63E-03
55	GO:0030308: negative regulation of cell growth	1.80E-03
56	GO:0000290: deadenylation-dependent decapping of nuclear-transcribed mRNA	1.80E-03
57	GO:0007029: endoplasmic reticulum organization	1.80E-03
58	GO:0010583: response to cyclopentenone	2.14E-03
59	GO:0009733: response to auxin	2.15E-03
60	GO:0009267: cellular response to starvation	2.21E-03
61	GO:0010315: auxin efflux	2.21E-03
62	GO:1900425: negative regulation of defense response to bacterium	2.21E-03
63	GO:0033365: protein localization to organelle	2.21E-03
64	GO:0010337: regulation of salicylic acid metabolic process	2.21E-03
65	GO:0006014: D-ribose metabolic process	2.21E-03
66	GO:0009759: indole glucosinolate biosynthetic process	2.21E-03
67	GO:0016070: RNA metabolic process	2.21E-03
68	GO:0009651: response to salt stress	2.25E-03
69	GO:0010252: auxin homeostasis	2.43E-03
70	GO:0070370: cellular heat acclimation	3.13E-03
71	GO:0080111: DNA demethylation	3.13E-03
72	GO:1902074: response to salt	3.13E-03
73	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	3.13E-03
74	GO:0080027: response to herbivore	3.13E-03
75	GO:0006955: immune response	3.13E-03
76	GO:0046470: phosphatidylcholine metabolic process	3.13E-03
77	GO:0009061: anaerobic respiration	3.63E-03
78	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	3.63E-03
79	GO:2000070: regulation of response to water deprivation	3.63E-03
80	GO:0016559: peroxisome fission	3.63E-03
81	GO:0008219: cell death	3.76E-03
82	GO:0030968: endoplasmic reticulum unfolded protein response	4.15E-03
83	GO:0006303: double-strand break repair via nonhomologous end joining	4.15E-03
84	GO:0034765: regulation of ion transmembrane transport	4.70E-03
85	GO:0010112: regulation of systemic acquired resistance	4.70E-03
86	GO:0007338: single fertilization	4.70E-03
87	GO:0008202: steroid metabolic process	5.27E-03
88	GO:0007064: mitotic sister chromatid cohesion	5.86E-03
89	GO:0006535: cysteine biosynthetic process from serine	5.86E-03
90	GO:0009688: abscisic acid biosynthetic process	5.86E-03
91	GO:0051707: response to other organism	6.13E-03
92	GO:0009698: phenylpropanoid metabolic process	6.48E-03
93	GO:0030148: sphingolipid biosynthetic process	6.48E-03
94	GO:0009636: response to toxic substance	6.89E-03
95	GO:0002213: defense response to insect	7.12E-03
96	GO:0010105: negative regulation of ethylene-activated signaling pathway	7.12E-03
97	GO:0071365: cellular response to auxin stimulus	7.12E-03
98	GO:0009723: response to ethylene	7.64E-03
99	GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process	7.78E-03
100	GO:0080167: response to karrikin	8.35E-03
101	GO:0034605: cellular response to heat	8.47E-03
102	GO:0006541: glutamine metabolic process	8.47E-03
103	GO:0010540: basipetal auxin transport	8.47E-03
104	GO:0046777: protein autophosphorylation	9.10E-03
105	GO:0007031: peroxisome organization	9.17E-03
106	GO:0071732: cellular response to nitric oxide	9.17E-03
107	GO:0010030: positive regulation of seed germination	9.17E-03
108	GO:0009969: xyloglucan biosynthetic process	9.17E-03
109	GO:0044550: secondary metabolite biosynthetic process	9.29E-03
110	GO:0009626: plant-type hypersensitive response	1.04E-02
111	GO:0009863: salicylic acid mediated signaling pathway	1.06E-02
112	GO:0080147: root hair cell development	1.06E-02
113	GO:0019344: cysteine biosynthetic process	1.06E-02
114	GO:0048278: vesicle docking	1.22E-02
115	GO:0031408: oxylipin biosynthetic process	1.22E-02
116	GO:0009814: defense response, incompatible interaction	1.30E-02
117	GO:0016226: iron-sulfur cluster assembly	1.30E-02
118	GO:0035428: hexose transmembrane transport	1.30E-02
119	GO:0009693: ethylene biosynthetic process	1.38E-02
120	GO:0071215: cellular response to abscisic acid stimulus	1.38E-02
121	GO:0071369: cellular response to ethylene stimulus	1.38E-02
122	GO:0009625: response to insect	1.38E-02
123	GO:0010227: floral organ abscission	1.38E-02
124	GO:0006012: galactose metabolic process	1.38E-02
125	GO:0042391: regulation of membrane potential	1.64E-02
126	GO:0010118: stomatal movement	1.64E-02
127	GO:0045489: pectin biosynthetic process	1.73E-02
128	GO:0006885: regulation of pH	1.73E-02
129	GO:0046323: glucose import	1.73E-02
130	GO:0048544: recognition of pollen	1.82E-02
131	GO:0061025: membrane fusion	1.82E-02
132	GO:0019252: starch biosynthetic process	1.92E-02
133	GO:0002229: defense response to oomycetes	2.01E-02
134	GO:0000302: response to reactive oxygen species	2.01E-02
135	GO:0010193: response to ozone	2.01E-02
136	GO:0010150: leaf senescence	2.05E-02
137	GO:0016032: viral process	2.11E-02
138	GO:0009734: auxin-activated signaling pathway	2.11E-02
139	GO:0009630: gravitropism	2.11E-02
140	GO:0006979: response to oxidative stress	2.13E-02
141	GO:0071281: cellular response to iron ion	2.21E-02
142	GO:0009737: response to abscisic acid	2.26E-02
143	GO:0019760: glucosinolate metabolic process	2.30E-02
144	GO:0009567: double fertilization forming a zygote and endosperm	2.30E-02
145	GO:0007166: cell surface receptor signaling pathway	2.34E-02
146	GO:0071805: potassium ion transmembrane transport	2.41E-02
147	GO:0010468: regulation of gene expression	2.44E-02
148	GO:0051607: defense response to virus	2.51E-02
149	GO:0001666: response to hypoxia	2.61E-02
150	GO:0009615: response to virus	2.61E-02
151	GO:0009738: abscisic acid-activated signaling pathway	2.71E-02
152	GO:0009816: defense response to bacterium, incompatible interaction	2.72E-02
153	GO:0006906: vesicle fusion	2.83E-02
154	GO:0009627: systemic acquired resistance	2.83E-02
155	GO:0042128: nitrate assimilation	2.83E-02
156	GO:0006950: response to stress	2.94E-02
157	GO:0035556: intracellular signal transduction	3.02E-02
158	GO:0009826: unidimensional cell growth	3.05E-02
159	GO:0010311: lateral root formation	3.27E-02
160	GO:0048767: root hair elongation	3.27E-02
161	GO:0009407: toxin catabolic process	3.38E-02
162	GO:0006811: ion transport	3.38E-02
163	GO:0006970: response to osmotic stress	3.41E-02
164	GO:0009631: cold acclimation	3.50E-02
165	GO:0010043: response to zinc ion	3.50E-02
166	GO:0007568: aging	3.50E-02
167	GO:0009867: jasmonic acid mediated signaling pathway	3.74E-02
168	GO:0055085: transmembrane transport	3.79E-02
169	GO:0006099: tricarboxylic acid cycle	3.86E-02
170	GO:0005975: carbohydrate metabolic process	3.87E-02
171	GO:0050832: defense response to fungus	3.92E-02
172	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.05E-02
173	GO:0010200: response to chitin	4.05E-02
174	GO:0006839: mitochondrial transport	4.10E-02
175	GO:0006887: exocytosis	4.22E-02
176	GO:0000209: protein polyubiquitination	4.60E-02
177	GO:0006952: defense response	4.60E-02

Rank	GO Term	Adjusted P value
1	GO:0016857: racemase and epimerase activity, acting on carbohydrates and derivatives	0.00E+00
2	GO:0010298: dihydrocamalexic acid decarboxylase activity	0.00E+00
3	GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity	0.00E+00
4	GO:0016603: glutaminyl-peptide cyclotransferase activity	0.00E+00
5	GO:0016301: kinase activity	2.10E-06
6	GO:0004049: anthranilate synthase activity	7.24E-06
7	GO:0010279: indole-3-acetic acid amido synthetase activity	3.05E-05
8	GO:0004834: tryptophan synthase activity	3.05E-05
9	GO:0033984: indole-3-glycerol-phosphate lyase activity	2.04E-04
10	GO:0080023: 3R-hydroxyacyl-CoA dehydratase activity	2.04E-04
11	GO:0046964: 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity	2.04E-04
12	GO:2001147: camalexin binding	2.04E-04
13	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	2.04E-04
14	GO:2001227: quercitrin binding	2.04E-04
15	GO:0004425: indole-3-glycerol-phosphate synthase activity	2.04E-04
16	GO:0004674: protein serine/threonine kinase activity	2.41E-04
17	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	2.57E-04
18	GO:0008171: O-methyltransferase activity	3.60E-04
19	GO:0005506: iron ion binding	4.46E-04
20	GO:0004750: ribulose-phosphate 3-epimerase activity	4.57E-04
21	GO:0032934: sterol binding	4.57E-04
22	GO:0045140: inositol phosphoceramide synthase activity	4.57E-04
23	GO:0004061: arylformamidase activity	4.57E-04
24	GO:0004142: diacylglycerol cholinephosphotransferase activity	4.57E-04
25	GO:0047209: coniferyl-alcohol glucosyltransferase activity	4.57E-04
26	GO:0004566: beta-glucuronidase activity	4.57E-04
27	GO:0003958: NADPH-hemoprotein reductase activity	4.57E-04
28	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	5.17E-04
29	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	5.24E-04
30	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	7.44E-04
31	GO:0050833: pyruvate transmembrane transporter activity	7.44E-04
32	GO:0004383: guanylate cyclase activity	7.44E-04
33	GO:0016595: glutamate binding	7.44E-04
34	GO:0004324: ferredoxin-NADP+ reductase activity	7.44E-04
35	GO:0031418: L-ascorbic acid binding	8.38E-04
36	GO:0000339: RNA cap binding	1.06E-03
37	GO:0020037: heme binding	1.26E-03
38	GO:0010328: auxin influx transmembrane transporter activity	1.41E-03
39	GO:0010385: double-stranded methylated DNA binding	1.41E-03
40	GO:0004031: aldehyde oxidase activity	1.41E-03
41	GO:0050302: indole-3-acetaldehyde oxidase activity	1.41E-03
42	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.41E-03
43	GO:0050660: flavin adenine dinucleotide binding	1.51E-03
44	GO:0010181: FMN binding	1.75E-03
45	GO:0005459: UDP-galactose transmembrane transporter activity	1.80E-03
46	GO:0005496: steroid binding	1.80E-03
47	GO:0005471: ATP:ADP antiporter activity	1.80E-03
48	GO:0004356: glutamate-ammonia ligase activity	1.80E-03
49	GO:0005524: ATP binding	1.99E-03
50	GO:0035252: UDP-xylosyltransferase activity	2.21E-03
51	GO:0004747: ribokinase activity	2.66E-03
52	GO:0004656: procollagen-proline 4-dioxygenase activity	2.66E-03
53	GO:0005242: inward rectifier potassium channel activity	2.66E-03
54	GO:0051020: GTPase binding	2.66E-03
55	GO:0004124: cysteine synthase activity	2.66E-03
56	GO:0030246: carbohydrate binding	3.00E-03
57	GO:0102425: myricetin 3-O-glucosyltransferase activity	3.13E-03
58	GO:0102360: daphnetin 3-O-glucosyltransferase activity	3.13E-03
59	GO:0043295: glutathione binding	3.13E-03
60	GO:0004620: phospholipase activity	3.13E-03
61	GO:0005507: copper ion binding	3.31E-03
62	GO:0019825: oxygen binding	3.31E-03
63	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	3.58E-03
64	GO:0004034: aldose 1-epimerase activity	3.63E-03
65	GO:0047893: flavonol 3-O-glucosyltransferase activity	3.63E-03
66	GO:0004033: aldo-keto reductase (NADP) activity	3.63E-03
67	GO:0008865: fructokinase activity	3.63E-03
68	GO:0015288: porin activity	3.63E-03
69	GO:0005267: potassium channel activity	4.15E-03
70	GO:0008142: oxysterol binding	4.15E-03
71	GO:0071949: FAD binding	4.70E-03
72	GO:0042802: identical protein binding	4.94E-03
73	GO:0004713: protein tyrosine kinase activity	5.86E-03
74	GO:0004364: glutathione transferase activity	5.89E-03
75	GO:0047372: acylglycerol lipase activity	6.48E-03
76	GO:0004521: endoribonuclease activity	7.12E-03
77	GO:0010329: auxin efflux transmembrane transporter activity	7.78E-03
78	GO:0015266: protein channel activity	7.78E-03
79	GO:0004022: alcohol dehydrogenase (NAD) activity	7.78E-03
80	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	8.47E-03
81	GO:0031624: ubiquitin conjugating enzyme binding	8.47E-03
82	GO:0008061: chitin binding	9.17E-03
83	GO:0016491: oxidoreductase activity	9.90E-03
84	GO:0051536: iron-sulfur cluster binding	1.06E-02
85	GO:0080044: quercetin 7-O-glucosyltransferase activity	1.08E-02
86	GO:0080043: quercetin 3-O-glucosyltransferase activity	1.08E-02
87	GO:0015079: potassium ion transmembrane transporter activity	1.14E-02
88	GO:0035251: UDP-glucosyltransferase activity	1.22E-02
89	GO:0004540: ribonuclease activity	1.22E-02
90	GO:0009055: electron carrier activity	1.50E-02
91	GO:0030551: cyclic nucleotide binding	1.64E-02
92	GO:0005451: monovalent cation:proton antiporter activity	1.64E-02
93	GO:0003713: transcription coactivator activity	1.73E-02
94	GO:0015144: carbohydrate transmembrane transporter activity	1.77E-02
95	GO:0015299: solute:proton antiporter activity	1.82E-02
96	GO:0005355: glucose transmembrane transporter activity	1.82E-02
97	GO:0016853: isomerase activity	1.82E-02
98	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.91E-02
99	GO:0005351: sugar:proton symporter activity	2.00E-02
100	GO:0015385: sodium:proton antiporter activity	2.21E-02
101	GO:0008194: UDP-glycosyltransferase activity	2.29E-02
102	GO:0051213: dioxygenase activity	2.61E-02
103	GO:0009931: calcium-dependent protein serine/threonine kinase activity	2.83E-02
104	GO:0030247: polysaccharide binding	2.94E-02
105	GO:0004683: calmodulin-dependent protein kinase activity	2.94E-02
106	GO:0008236: serine-type peptidase activity	3.05E-02
107	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.16E-02
108	GO:0050897: cobalt ion binding	3.50E-02
109	GO:0004672: protein kinase activity	3.69E-02
110	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.74E-02
111	GO:0008233: peptidase activity	3.85E-02
112	GO:0004497: monooxygenase activity	3.92E-02
113	GO:0008422: beta-glucosidase activity	3.98E-02
114	GO:0000149: SNARE binding	3.98E-02
115	GO:0004712: protein serine/threonine/tyrosine kinase activity	3.98E-02
116	GO:0051539: 4 iron, 4 sulfur cluster binding	4.10E-02
117	GO:0050661: NADP binding	4.10E-02
118	GO:0061630: ubiquitin protein ligase activity	4.12E-02
119	GO:0005484: SNAP receptor activity	4.47E-02
120	GO:0051537: 2 iron, 2 sulfur cluster binding	4.73E-02
121	GO:0042803: protein homodimerization activity	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0016021: integral component of membrane	1.71E-06
2	GO:0005783: endoplasmic reticulum	3.99E-06
3	GO:0005886: plasma membrane	5.97E-06
4	GO:0045252: oxoglutarate dehydrogenase complex	2.04E-04
5	GO:0005950: anthranilate synthase complex	4.57E-04
6	GO:0042406: extrinsic component of endoplasmic reticulum membrane	7.44E-04
7	GO:0005618: cell wall	1.16E-03
8	GO:0016020: membrane	1.16E-03
9	GO:0009527: plastid outer membrane	1.41E-03
10	GO:0005829: cytosol	1.75E-03
11	GO:0005778: peroxisomal membrane	2.58E-03
12	GO:0030173: integral component of Golgi membrane	2.66E-03
13	GO:0031305: integral component of mitochondrial inner membrane	3.63E-03
14	GO:0005779: integral component of peroxisomal membrane	4.15E-03
15	GO:0046930: pore complex	4.15E-03
16	GO:0016604: nuclear body	5.27E-03
17	GO:0005765: lysosomal membrane	6.48E-03
18	GO:0005578: proteinaceous extracellular matrix	7.78E-03
19	GO:0030176: integral component of endoplasmic reticulum membrane	9.17E-03
20	GO:0012505: endomembrane system	1.14E-02
21	GO:0005789: endoplasmic reticulum membrane	1.28E-02
22	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.47E-02
23	GO:0043231: intracellular membrane-bounded organelle	1.55E-02
24	GO:0009506: plasmodesma	2.40E-02
25	GO:0000932: P-body	2.61E-02
26	GO:0009505: plant-type cell wall	2.93E-02
27	GO:0009707: chloroplast outer membrane	3.16E-02
28	GO:0000151: ubiquitin ligase complex	3.16E-02
29	GO:0005777: peroxisome	3.35E-02
30	GO:0031201: SNARE complex	4.22E-02