Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G02830

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0019265: glycine biosynthetic process, by transamination of glyoxylate0.00E+00
2GO:0071629: ubiquitin-dependent catabolism of misfolded proteins by cytoplasm-associated proteasome0.00E+00
3GO:0015822: ornithine transport0.00E+00
4GO:0010336: gibberellic acid homeostasis0.00E+00
5GO:0080094: response to trehalose-6-phosphate0.00E+00
6GO:0009715: chalcone biosynthetic process0.00E+00
7GO:0052889: 9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene0.00E+00
8GO:0005996: monosaccharide metabolic process0.00E+00
9GO:0071370: cellular response to gibberellin stimulus0.00E+00
10GO:0090393: sepal giant cell development0.00E+00
11GO:0071555: cell wall organization1.45E-06
12GO:0080167: response to karrikin5.09E-06
13GO:0016117: carotenoid biosynthetic process1.93E-05
14GO:0045489: pectin biosynthetic process2.65E-05
15GO:0019464: glycine decarboxylation via glycine cleavage system7.33E-05
16GO:0006546: glycine catabolic process7.33E-05
17GO:0009902: chloroplast relocation7.33E-05
18GO:0009813: flavonoid biosynthetic process1.46E-04
19GO:0006810: transport1.95E-04
20GO:0006659: phosphatidylserine biosynthetic process3.42E-04
21GO:0048438: floral whorl development3.42E-04
22GO:0000066: mitochondrial ornithine transport3.42E-04
23GO:0019510: S-adenosylhomocysteine catabolic process3.42E-04
24GO:0006169: adenosine salvage3.42E-04
25GO:1901349: glucosinolate transport3.42E-04
26GO:1902265: abscisic acid homeostasis3.42E-04
27GO:0090449: phloem glucosinolate loading3.42E-04
28GO:0052543: callose deposition in cell wall3.67E-04
29GO:0007155: cell adhesion3.67E-04
30GO:0008610: lipid biosynthetic process3.67E-04
31GO:0071554: cell wall organization or biogenesis4.99E-04
32GO:0005975: carbohydrate metabolic process7.04E-04
33GO:0015712: hexose phosphate transport7.45E-04
34GO:0060919: auxin influx7.45E-04
35GO:0030388: fructose 1,6-bisphosphate metabolic process7.45E-04
36GO:2000123: positive regulation of stomatal complex development7.45E-04
37GO:0010275: NAD(P)H dehydrogenase complex assembly7.45E-04
38GO:0006152: purine nucleoside catabolic process7.45E-04
39GO:0009629: response to gravity7.45E-04
40GO:1903338: regulation of cell wall organization or biogenesis7.45E-04
41GO:0019388: galactose catabolic process7.45E-04
42GO:0033353: S-adenosylmethionine cycle7.45E-04
43GO:0007154: cell communication7.45E-04
44GO:0010220: positive regulation of vernalization response7.45E-04
45GO:0000272: polysaccharide catabolic process8.59E-04
46GO:0009767: photosynthetic electron transport chain1.11E-03
47GO:0006696: ergosterol biosynthetic process1.21E-03
48GO:0044375: regulation of peroxisome size1.21E-03
49GO:0006651: diacylglycerol biosynthetic process1.21E-03
50GO:0005977: glycogen metabolic process1.21E-03
51GO:0006011: UDP-glucose metabolic process1.21E-03
52GO:0031022: nuclear migration along microfilament1.21E-03
53GO:0006000: fructose metabolic process1.21E-03
54GO:0035436: triose phosphate transmembrane transport1.21E-03
55GO:0019253: reductive pentose-phosphate cycle1.25E-03
56GO:0048768: root hair cell tip growth1.25E-03
57GO:0005985: sucrose metabolic process1.39E-03
58GO:0016051: carbohydrate biosynthetic process1.49E-03
59GO:0042823: pyridoxal phosphate biosynthetic process1.74E-03
60GO:0032877: positive regulation of DNA endoreduplication1.74E-03
61GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.74E-03
62GO:0051016: barbed-end actin filament capping1.74E-03
63GO:0009590: detection of gravity1.74E-03
64GO:0009963: positive regulation of flavonoid biosynthetic process1.74E-03
65GO:0009926: auxin polar transport2.06E-03
66GO:0042546: cell wall biogenesis2.17E-03
67GO:0006730: one-carbon metabolic process2.28E-03
68GO:0015713: phosphoglycerate transport2.33E-03
69GO:0009694: jasmonic acid metabolic process2.33E-03
70GO:0006542: glutamine biosynthetic process2.33E-03
71GO:0019676: ammonia assimilation cycle2.33E-03
72GO:0009765: photosynthesis, light harvesting2.33E-03
73GO:0045727: positive regulation of translation2.33E-03
74GO:2000038: regulation of stomatal complex development2.33E-03
75GO:0006021: inositol biosynthetic process2.33E-03
76GO:0009411: response to UV2.49E-03
77GO:0016123: xanthophyll biosynthetic process2.98E-03
78GO:0044209: AMP salvage2.98E-03
79GO:0010375: stomatal complex patterning2.98E-03
80GO:0016120: carotene biosynthetic process2.98E-03
81GO:0000271: polysaccharide biosynthetic process3.17E-03
82GO:0006857: oligopeptide transport3.29E-03
83GO:0009635: response to herbicide3.68E-03
84GO:0000060: protein import into nucleus, translocation3.68E-03
85GO:0010942: positive regulation of cell death3.68E-03
86GO:0010304: PSII associated light-harvesting complex II catabolic process3.68E-03
87GO:0010264: myo-inositol hexakisphosphate biosynthetic process3.68E-03
88GO:0070814: hydrogen sulfide biosynthetic process3.68E-03
89GO:0019252: starch biosynthetic process3.94E-03
90GO:0048510: regulation of timing of transition from vegetative to reproductive phase4.22E-03
91GO:0009903: chloroplast avoidance movement4.43E-03
92GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity4.43E-03
93GO:0010077: maintenance of inflorescence meristem identity4.43E-03
94GO:0045926: negative regulation of growth4.43E-03
95GO:0010076: maintenance of floral meristem identity4.43E-03
96GO:0009094: L-phenylalanine biosynthetic process4.43E-03
97GO:0010583: response to cyclopentenone4.50E-03
98GO:0007267: cell-cell signaling5.43E-03
99GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway5.57E-03
100GO:0045010: actin nucleation6.08E-03
101GO:0031540: regulation of anthocyanin biosynthetic process6.08E-03
102GO:0016559: peroxisome fission6.08E-03
103GO:0005978: glycogen biosynthetic process6.08E-03
104GO:0009787: regulation of abscisic acid-activated signaling pathway6.08E-03
105GO:0046686: response to cadmium ion6.44E-03
106GO:0042128: nitrate assimilation6.81E-03
107GO:0006002: fructose 6-phosphate metabolic process6.98E-03
108GO:0022900: electron transport chain6.98E-03
109GO:0048193: Golgi vesicle transport6.98E-03
110GO:0032544: plastid translation6.98E-03
111GO:0006754: ATP biosynthetic process7.91E-03
112GO:0048589: developmental growth7.91E-03
113GO:0009056: catabolic process7.91E-03
114GO:0018298: protein-chromophore linkage7.97E-03
115GO:0010218: response to far red light8.79E-03
116GO:0048829: root cap development9.92E-03
117GO:0010192: mucilage biosynthetic process9.92E-03
118GO:0051555: flavonol biosynthetic process9.92E-03
119GO:0009970: cellular response to sulfate starvation9.92E-03
120GO:0000103: sulfate assimilation9.92E-03
121GO:0009637: response to blue light1.01E-02
122GO:0009853: photorespiration1.01E-02
123GO:0018119: peptidyl-cysteine S-nitrosylation1.10E-02
124GO:0048229: gametophyte development1.10E-02
125GO:0019684: photosynthesis, light reaction1.10E-02
126GO:0009698: phenylpropanoid metabolic process1.10E-02
127GO:0009773: photosynthetic electron transport in photosystem I1.10E-02
128GO:0008152: metabolic process1.11E-02
129GO:0009617: response to bacterium1.19E-02
130GO:0010582: floral meristem determinacy1.21E-02
131GO:0016925: protein sumoylation1.21E-02
132GO:0015706: nitrate transport1.21E-02
133GO:0016024: CDP-diacylglycerol biosynthetic process1.21E-02
134GO:0010114: response to red light1.31E-02
135GO:0009744: response to sucrose1.31E-02
136GO:0030036: actin cytoskeleton organization1.32E-02
137GO:0050826: response to freezing1.32E-02
138GO:0009725: response to hormone1.32E-02
139GO:0006094: gluconeogenesis1.32E-02
140GO:0005986: sucrose biosynthetic process1.32E-02
141GO:0030048: actin filament-based movement1.32E-02
142GO:0006006: glucose metabolic process1.32E-02
143GO:0010223: secondary shoot formation1.44E-02
144GO:0009934: regulation of meristem structural organization1.44E-02
145GO:0010143: cutin biosynthetic process1.44E-02
146GO:0007031: peroxisome organization1.56E-02
147GO:0010167: response to nitrate1.56E-02
148GO:0009833: plant-type primary cell wall biogenesis1.69E-02
149GO:0006833: water transport1.69E-02
150GO:0007010: cytoskeleton organization1.82E-02
151GO:0010224: response to UV-B1.83E-02
152GO:0009695: jasmonic acid biosynthetic process1.95E-02
153GO:0009768: photosynthesis, light harvesting in photosystem I1.95E-02
154GO:0051260: protein homooligomerization2.08E-02
155GO:0031408: oxylipin biosynthetic process2.08E-02
156GO:0006366: transcription from RNA polymerase II promoter2.08E-02
157GO:0003333: amino acid transmembrane transport2.08E-02
158GO:0009416: response to light stimulus2.27E-02
159GO:0009611: response to wounding2.34E-02
160GO:0040007: growth2.37E-02
161GO:0009294: DNA mediated transformation2.37E-02
162GO:0010584: pollen exine formation2.51E-02
163GO:0006284: base-excision repair2.51E-02
164GO:0019722: calcium-mediated signaling2.51E-02
165GO:0051301: cell division2.57E-02
166GO:0034220: ion transmembrane transport2.81E-02
167GO:0015991: ATP hydrolysis coupled proton transport2.81E-02
168GO:0042631: cellular response to water deprivation2.81E-02
169GO:0080022: primary root development2.81E-02
170GO:0042335: cuticle development2.81E-02
171GO:0009741: response to brassinosteroid2.96E-02
172GO:0015986: ATP synthesis coupled proton transport3.12E-02
173GO:0007059: chromosome segregation3.12E-02
174GO:0008654: phospholipid biosynthetic process3.28E-02
175GO:0009791: post-embryonic development3.28E-02
176GO:0016042: lipid catabolic process3.41E-02
177GO:0007264: small GTPase mediated signal transduction3.61E-02
178GO:0016032: viral process3.61E-02
179GO:0019761: glucosinolate biosynthetic process3.61E-02
180GO:1901657: glycosyl compound metabolic process3.78E-02
181GO:0016125: sterol metabolic process3.95E-02
182GO:0006633: fatty acid biosynthetic process3.95E-02
183GO:0051607: defense response to virus4.30E-02
184GO:0045490: pectin catabolic process4.34E-02
185GO:0007623: circadian rhythm4.34E-02
186GO:0016126: sterol biosynthetic process4.47E-02
187GO:0009788: negative regulation of abscisic acid-activated signaling pathway4.65E-02
188GO:0010029: regulation of seed germination4.65E-02
RankGO TermAdjusted P value
1GO:0030795: jasmonate O-methyltransferase activity0.00E+00
2GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity0.00E+00
3GO:0046905: phytoene synthase activity0.00E+00
4GO:0102078: methyl jasmonate methylesterase activity0.00E+00
5GO:0052886: 9,9'-dicis-carotene:quinone oxidoreductase activity0.00E+00
6GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
7GO:0050281: serine-glyoxylate transaminase activity0.00E+00
8GO:0016719: carotene 7,8-desaturase activity0.00E+00
9GO:0016210: naringenin-chalcone synthase activity0.00E+00
10GO:0008962: phosphatidylglycerophosphatase activity0.00E+00
11GO:0050613: delta14-sterol reductase activity0.00E+00
12GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
13GO:0052887: 7,9,9'-tricis-neurosporene:quinone oxidoreductase activity0.00E+00
14GO:0047974: guanosine deaminase activity0.00E+00
15GO:0004760: serine-pyruvate transaminase activity0.00E+00
16GO:0004375: glycine dehydrogenase (decarboxylating) activity4.12E-05
17GO:0045430: chalcone isomerase activity7.33E-05
18GO:0016757: transferase activity, transferring glycosyl groups9.37E-05
19GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity2.25E-04
20GO:0051996: squalene synthase activity3.42E-04
21GO:0090448: glucosinolate:proton symporter activity3.42E-04
22GO:0004001: adenosine kinase activity3.42E-04
23GO:0045486: naringenin 3-dioxygenase activity3.42E-04
24GO:0047259: glucomannan 4-beta-mannosyltransferase activity3.42E-04
25GO:0004013: adenosylhomocysteinase activity3.42E-04
26GO:0004575: sucrose alpha-glucosidase activity6.39E-04
27GO:0016413: O-acetyltransferase activity7.42E-04
28GO:0080106: 7-methylthiopropyl glucosinolate S-oxygenase activity7.45E-04
29GO:0048531: beta-1,3-galactosyltransferase activity7.45E-04
30GO:0010291: carotene beta-ring hydroxylase activity7.45E-04
31GO:0016868: intramolecular transferase activity, phosphotransferases7.45E-04
32GO:0004618: phosphoglycerate kinase activity7.45E-04
33GO:0010297: heteropolysaccharide binding7.45E-04
34GO:0004047: aminomethyltransferase activity7.45E-04
35GO:0080102: 3-methylthiopropyl glucosinolate S-oxygenase activity7.45E-04
36GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity7.45E-04
37GO:0080104: 5-methylthiopropyl glucosinolate S-oxygenase activity7.45E-04
38GO:0004614: phosphoglucomutase activity7.45E-04
39GO:0008825: cyclopropane-fatty-acyl-phospholipid synthase activity7.45E-04
40GO:0000064: L-ornithine transmembrane transporter activity7.45E-04
41GO:0004310: farnesyl-diphosphate farnesyltransferase activity7.45E-04
42GO:0004512: inositol-3-phosphate synthase activity7.45E-04
43GO:0080103: 4-methylthiopropyl glucosinolate S-oxygenase activity1.21E-03
44GO:0004781: sulfate adenylyltransferase (ATP) activity1.21E-03
45GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity1.21E-03
46GO:0071917: triose-phosphate transmembrane transporter activity1.21E-03
47GO:0003913: DNA photolyase activity1.21E-03
48GO:0004148: dihydrolipoyl dehydrogenase activity1.21E-03
49GO:0052689: carboxylic ester hydrolase activity1.47E-03
50GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.74E-03
51GO:0001872: (1->3)-beta-D-glucan binding1.74E-03
52GO:0080107: 8-methylthiopropyl glucosinolate S-oxygenase activity1.74E-03
53GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity2.28E-03
54GO:0015120: phosphoglycerate transmembrane transporter activity2.33E-03
55GO:0047769: arogenate dehydratase activity2.33E-03
56GO:0004664: prephenate dehydratase activity2.33E-03
57GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.33E-03
58GO:0008453: alanine-glyoxylate transaminase activity2.33E-03
59GO:0046527: glucosyltransferase activity2.33E-03
60GO:0010328: auxin influx transmembrane transporter activity2.33E-03
61GO:0052793: pectin acetylesterase activity2.33E-03
62GO:0031386: protein tag2.98E-03
63GO:0004356: glutamate-ammonia ligase activity2.98E-03
64GO:0045431: flavonol synthase activity2.98E-03
65GO:0008725: DNA-3-methyladenine glycosylase activity2.98E-03
66GO:0005215: transporter activity3.06E-03
67GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds3.28E-03
68GO:0102229: amylopectin maltohydrolase activity3.68E-03
69GO:0042578: phosphoric ester hydrolase activity3.68E-03
70GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity3.68E-03
71GO:0080030: methyl indole-3-acetate esterase activity3.68E-03
72GO:0000210: NAD+ diphosphatase activity3.68E-03
73GO:0004366: glycerol-3-phosphate O-acyltransferase activity3.68E-03
74GO:0019901: protein kinase binding3.94E-03
75GO:0008195: phosphatidate phosphatase activity4.43E-03
76GO:0051753: mannan synthase activity4.43E-03
77GO:0016161: beta-amylase activity4.43E-03
78GO:0016759: cellulose synthase activity5.11E-03
79GO:0016621: cinnamoyl-CoA reductase activity5.23E-03
80GO:0009881: photoreceptor activity5.23E-03
81GO:0043295: glutathione binding5.23E-03
82GO:0016597: amino acid binding5.76E-03
83GO:0004714: transmembrane receptor protein tyrosine kinase activity6.08E-03
84GO:0004564: beta-fructofuranosidase activity6.08E-03
85GO:0016758: transferase activity, transferring hexosyl groups6.09E-03
86GO:0016829: lyase activity6.96E-03
87GO:0030247: polysaccharide binding7.19E-03
88GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism7.91E-03
89GO:0016207: 4-coumarate-CoA ligase activity7.91E-03
90GO:0015112: nitrate transmembrane transporter activity8.89E-03
91GO:0046961: proton-transporting ATPase activity, rotational mechanism1.10E-02
92GO:0004860: protein kinase inhibitor activity1.10E-02
93GO:0016787: hydrolase activity1.27E-02
94GO:0004089: carbonate dehydratase activity1.32E-02
95GO:0004565: beta-galactosidase activity1.32E-02
96GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.44E-02
97GO:0015293: symporter activity1.47E-02
98GO:0051119: sugar transmembrane transporter activity1.56E-02
99GO:0004672: protein kinase activity1.60E-02
100GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.69E-02
101GO:0031409: pigment binding1.69E-02
102GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.69E-02
103GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.69E-02
104GO:0016788: hydrolase activity, acting on ester bonds1.70E-02
105GO:0031418: L-ascorbic acid binding1.82E-02
106GO:0001046: core promoter sequence-specific DNA binding1.82E-02
107GO:0016887: ATPase activity1.85E-02
108GO:0051087: chaperone binding1.95E-02
109GO:0004176: ATP-dependent peptidase activity2.08E-02
110GO:0004650: polygalacturonase activity2.30E-02
111GO:0016760: cellulose synthase (UDP-forming) activity2.37E-02
112GO:0022857: transmembrane transporter activity2.37E-02
113GO:0030570: pectate lyase activity2.37E-02
114GO:0004499: N,N-dimethylaniline monooxygenase activity2.51E-02
115GO:0016746: transferase activity, transferring acyl groups2.59E-02
116GO:0016740: transferase activity3.04E-02
117GO:0005355: glucose transmembrane transporter activity3.12E-02
118GO:0050662: coenzyme binding3.12E-02
119GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen3.24E-02
120GO:0004872: receptor activity3.28E-02
121GO:0016762: xyloglucan:xyloglucosyl transferase activity3.44E-02
122GO:0048038: quinone binding3.44E-02
123GO:0051015: actin filament binding3.78E-02
124GO:0005507: copper ion binding3.80E-02
125GO:0016791: phosphatase activity3.95E-02
126GO:0008237: metallopeptidase activity4.12E-02
127GO:0008483: transaminase activity4.12E-02
128GO:0016722: oxidoreductase activity, oxidizing metal ions4.12E-02
129GO:0005200: structural constituent of cytoskeleton4.12E-02
130GO:0015297: antiporter activity4.14E-02
131GO:0015250: water channel activity4.47E-02
132GO:0008017: microtubule binding4.54E-02
133GO:0016168: chlorophyll binding4.65E-02
134GO:0008194: UDP-glycosyltransferase activity4.84E-02
RankGO TermAdjusted P value
1GO:0009344: nitrite reductase complex [NAD(P)H]0.00E+00
2GO:0097708: intracellular vesicle0.00E+00
3GO:0009507: chloroplast6.49E-06
4GO:0005794: Golgi apparatus1.58E-05
5GO:0031225: anchored component of membrane1.91E-05
6GO:0005775: vacuolar lumen4.12E-05
7GO:0005960: glycine cleavage complex4.12E-05
8GO:0005886: plasma membrane6.00E-05
9GO:0009941: chloroplast envelope1.10E-04
10GO:0009505: plant-type cell wall1.15E-04
11GO:0009570: chloroplast stroma1.52E-04
12GO:0016021: integral component of membrane3.20E-04
13GO:0048046: apoplast3.77E-04
14GO:0000139: Golgi membrane5.20E-04
15GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)5.41E-04
16GO:0046658: anchored component of plasma membrane6.44E-04
17GO:0009535: chloroplast thylakoid membrane6.87E-04
18GO:0010319: stromule6.88E-04
19GO:0033178: proton-transporting two-sector ATPase complex, catalytic domain7.45E-04
20GO:0000427: plastid-encoded plastid RNA polymerase complex7.45E-04
21GO:0009579: thylakoid7.76E-04
22GO:0009543: chloroplast thylakoid lumen1.20E-03
23GO:0042406: extrinsic component of endoplasmic reticulum membrane1.21E-03
24GO:0009509: chromoplast1.21E-03
25GO:0030095: chloroplast photosystem II1.25E-03
26GO:0000325: plant-type vacuole1.33E-03
27GO:0009654: photosystem II oxygen evolving complex1.90E-03
28GO:0010168: ER body3.68E-03
29GO:0019898: extrinsic component of membrane3.94E-03
30GO:0016020: membrane4.81E-03
31GO:0005576: extracellular region5.09E-03
32GO:0010287: plastoglobule5.88E-03
33GO:0005779: integral component of peroxisomal membrane6.98E-03
34GO:0005618: cell wall8.21E-03
35GO:0009534: chloroplast thylakoid9.31E-03
36GO:0009506: plasmodesma9.67E-03
37GO:0005765: lysosomal membrane1.10E-02
38GO:0048471: perinuclear region of cytoplasm1.10E-02
39GO:0031902: late endosome membrane1.20E-02
40GO:0019013: viral nucleocapsid1.32E-02
41GO:0030076: light-harvesting complex1.56E-02
42GO:0030176: integral component of endoplasmic reticulum membrane1.56E-02
43GO:0005753: mitochondrial proton-transporting ATP synthase complex1.56E-02
44GO:0031969: chloroplast membrane2.17E-02
45GO:0009522: photosystem I3.12E-02
46GO:0005623: cell3.24E-02
47GO:0009523: photosystem II3.28E-02
48GO:0005773: vacuole3.73E-02
49GO:0005778: peroxisomal membrane4.12E-02
50GO:0009705: plant-type vacuole membrane4.34E-02
51GO:0005802: trans-Golgi network4.50E-02
Gene type



Gene DE type