GO Enrichment Analysis of Co-expressed Genes with
AT3G02720
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0046677: response to antibiotic | 0.00E+00 |
| 2 | GO:0007172: signal complex assembly | 0.00E+00 |
| 3 | GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process | 0.00E+00 |
| 4 | GO:0032928: regulation of superoxide anion generation | 0.00E+00 |
| 5 | GO:1904526: regulation of microtubule binding | 0.00E+00 |
| 6 | GO:0009661: chromoplast organization | 0.00E+00 |
| 7 | GO:0006849: plasma membrane pyruvate transport | 0.00E+00 |
| 8 | GO:1902171: regulation of tocopherol cyclase activity | 0.00E+00 |
| 9 | GO:1901918: negative regulation of exoribonuclease activity | 0.00E+00 |
| 10 | GO:0015979: photosynthesis | 4.66E-08 |
| 11 | GO:0015995: chlorophyll biosynthetic process | 2.12E-07 |
| 12 | GO:0016122: xanthophyll metabolic process | 8.92E-07 |
| 13 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 3.63E-05 |
| 14 | GO:0050821: protein stabilization | 8.88E-05 |
| 15 | GO:0006824: cobalt ion transport | 1.33E-04 |
| 16 | GO:0000476: maturation of 4.5S rRNA | 1.33E-04 |
| 17 | GO:0000967: rRNA 5'-end processing | 1.33E-04 |
| 18 | GO:0010028: xanthophyll cycle | 1.33E-04 |
| 19 | GO:0000305: response to oxygen radical | 1.33E-04 |
| 20 | GO:0019684: photosynthesis, light reaction | 2.29E-04 |
| 21 | GO:0042548: regulation of photosynthesis, light reaction | 3.07E-04 |
| 22 | GO:0034755: iron ion transmembrane transport | 3.07E-04 |
| 23 | GO:0035304: regulation of protein dephosphorylation | 3.07E-04 |
| 24 | GO:0050992: dimethylallyl diphosphate biosynthetic process | 3.07E-04 |
| 25 | GO:1904143: positive regulation of carotenoid biosynthetic process | 3.07E-04 |
| 26 | GO:0034470: ncRNA processing | 3.07E-04 |
| 27 | GO:0010207: photosystem II assembly | 3.42E-04 |
| 28 | GO:0009640: photomorphogenesis | 3.83E-04 |
| 29 | GO:0010114: response to red light | 3.83E-04 |
| 30 | GO:0009768: photosynthesis, light harvesting in photosystem I | 5.22E-04 |
| 31 | GO:0051639: actin filament network formation | 7.24E-04 |
| 32 | GO:0045454: cell redox homeostasis | 8.97E-04 |
| 33 | GO:0030007: cellular potassium ion homeostasis | 9.59E-04 |
| 34 | GO:0006749: glutathione metabolic process | 9.59E-04 |
| 35 | GO:0042938: dipeptide transport | 9.59E-04 |
| 36 | GO:0051764: actin crosslink formation | 9.59E-04 |
| 37 | GO:0009765: photosynthesis, light harvesting | 9.59E-04 |
| 38 | GO:0015994: chlorophyll metabolic process | 9.59E-04 |
| 39 | GO:0016120: carotene biosynthetic process | 1.21E-03 |
| 40 | GO:0010117: photoprotection | 1.21E-03 |
| 41 | GO:0006629: lipid metabolic process | 1.23E-03 |
| 42 | GO:0071805: potassium ion transmembrane transport | 1.44E-03 |
| 43 | GO:0009228: thiamine biosynthetic process | 1.49E-03 |
| 44 | GO:0006655: phosphatidylglycerol biosynthetic process | 1.49E-03 |
| 45 | GO:0009643: photosynthetic acclimation | 1.49E-03 |
| 46 | GO:0042549: photosystem II stabilization | 1.49E-03 |
| 47 | GO:0045926: negative regulation of growth | 1.78E-03 |
| 48 | GO:0009942: longitudinal axis specification | 1.78E-03 |
| 49 | GO:0010189: vitamin E biosynthetic process | 1.78E-03 |
| 50 | GO:0071470: cellular response to osmotic stress | 1.78E-03 |
| 51 | GO:0009769: photosynthesis, light harvesting in photosystem II | 2.09E-03 |
| 52 | GO:0050829: defense response to Gram-negative bacterium | 2.09E-03 |
| 53 | GO:0009645: response to low light intensity stimulus | 2.09E-03 |
| 54 | GO:0018298: protein-chromophore linkage | 2.09E-03 |
| 55 | GO:0080186: developmental vegetative growth | 2.09E-03 |
| 56 | GO:0010218: response to far red light | 2.30E-03 |
| 57 | GO:0009642: response to light intensity | 2.42E-03 |
| 58 | GO:0009637: response to blue light | 2.64E-03 |
| 59 | GO:0034599: cellular response to oxidative stress | 2.76E-03 |
| 60 | GO:0009657: plastid organization | 2.77E-03 |
| 61 | GO:0048574: long-day photoperiodism, flowering | 2.77E-03 |
| 62 | GO:0007389: pattern specification process | 2.77E-03 |
| 63 | GO:0048507: meristem development | 3.13E-03 |
| 64 | GO:0010206: photosystem II repair | 3.13E-03 |
| 65 | GO:0034765: regulation of ion transmembrane transport | 3.13E-03 |
| 66 | GO:0009051: pentose-phosphate shunt, oxidative branch | 3.13E-03 |
| 67 | GO:0006631: fatty acid metabolic process | 3.13E-03 |
| 68 | GO:0010205: photoinhibition | 3.50E-03 |
| 69 | GO:0006779: porphyrin-containing compound biosynthetic process | 3.50E-03 |
| 70 | GO:1900865: chloroplast RNA modification | 3.50E-03 |
| 71 | GO:0055114: oxidation-reduction process | 3.84E-03 |
| 72 | GO:0006782: protoporphyrinogen IX biosynthetic process | 3.89E-03 |
| 73 | GO:0009688: abscisic acid biosynthetic process | 3.89E-03 |
| 74 | GO:0045036: protein targeting to chloroplast | 3.89E-03 |
| 75 | GO:0043085: positive regulation of catalytic activity | 4.30E-03 |
| 76 | GO:0030148: sphingolipid biosynthetic process | 4.30E-03 |
| 77 | GO:0009698: phenylpropanoid metabolic process | 4.30E-03 |
| 78 | GO:0009773: photosynthetic electron transport in photosystem I | 4.30E-03 |
| 79 | GO:0016024: CDP-diacylglycerol biosynthetic process | 4.72E-03 |
| 80 | GO:0015706: nitrate transport | 4.72E-03 |
| 81 | GO:0006094: gluconeogenesis | 5.15E-03 |
| 82 | GO:0009934: regulation of meristem structural organization | 5.60E-03 |
| 83 | GO:0034976: response to endoplasmic reticulum stress | 6.53E-03 |
| 84 | GO:0006396: RNA processing | 6.67E-03 |
| 85 | GO:0051017: actin filament bundle assembly | 7.01E-03 |
| 86 | GO:0006289: nucleotide-excision repair | 7.01E-03 |
| 87 | GO:0007017: microtubule-based process | 7.51E-03 |
| 88 | GO:0016114: terpenoid biosynthetic process | 8.02E-03 |
| 89 | GO:0051260: protein homooligomerization | 8.02E-03 |
| 90 | GO:0009269: response to desiccation | 8.02E-03 |
| 91 | GO:0070417: cellular response to cold | 1.02E-02 |
| 92 | GO:0007623: circadian rhythm | 1.12E-02 |
| 93 | GO:0010305: leaf vascular tissue pattern formation | 1.13E-02 |
| 94 | GO:0006662: glycerol ether metabolic process | 1.13E-02 |
| 95 | GO:0009741: response to brassinosteroid | 1.13E-02 |
| 96 | GO:0007018: microtubule-based movement | 1.19E-02 |
| 97 | GO:0006814: sodium ion transport | 1.19E-02 |
| 98 | GO:0008654: phospholipid biosynthetic process | 1.25E-02 |
| 99 | GO:0010193: response to ozone | 1.32E-02 |
| 100 | GO:0048510: regulation of timing of transition from vegetative to reproductive phase | 1.32E-02 |
| 101 | GO:0008380: RNA splicing | 1.34E-02 |
| 102 | GO:0010583: response to cyclopentenone | 1.38E-02 |
| 103 | GO:0010252: auxin homeostasis | 1.51E-02 |
| 104 | GO:0005975: carbohydrate metabolic process | 1.60E-02 |
| 105 | GO:0010029: regulation of seed germination | 1.78E-02 |
| 106 | GO:0016311: dephosphorylation | 1.99E-02 |
| 107 | GO:0010119: regulation of stomatal movement | 2.29E-02 |
| 108 | GO:0007568: aging | 2.29E-02 |
| 109 | GO:0009910: negative regulation of flower development | 2.29E-02 |
| 110 | GO:0044550: secondary metabolite biosynthetic process | 2.35E-02 |
| 111 | GO:0009926: auxin polar transport | 2.92E-02 |
| 112 | GO:0009644: response to high light intensity | 3.09E-02 |
| 113 | GO:0048364: root development | 3.33E-02 |
| 114 | GO:0006397: mRNA processing | 3.33E-02 |
| 115 | GO:0006812: cation transport | 3.44E-02 |
| 116 | GO:0006364: rRNA processing | 3.62E-02 |
| 117 | GO:0006813: potassium ion transport | 3.62E-02 |
| 118 | GO:0010224: response to UV-B | 3.71E-02 |
| 119 | GO:0006857: oligopeptide transport | 3.80E-02 |
| 120 | GO:0009909: regulation of flower development | 3.89E-02 |
| 121 | GO:0006417: regulation of translation | 3.89E-02 |
| 122 | GO:0006096: glycolytic process | 4.07E-02 |
| 123 | GO:0043086: negative regulation of catalytic activity | 4.07E-02 |
| 124 | GO:0009740: gibberellic acid mediated signaling pathway | 4.45E-02 |
| 125 | GO:0006508: proteolysis | 4.50E-02 |
| 126 | GO:0042545: cell wall modification | 4.55E-02 |
| 127 | GO:0009742: brassinosteroid mediated signaling pathway | 4.84E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0015269: calcium-activated potassium channel activity | 0.00E+00 |
| 2 | GO:0045550: geranylgeranyl reductase activity | 0.00E+00 |
| 3 | GO:0051745: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity | 0.00E+00 |
| 4 | GO:0015038: glutathione disulfide oxidoreductase activity | 0.00E+00 |
| 5 | GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity | 0.00E+00 |
| 6 | GO:0046422: violaxanthin de-epoxidase activity | 0.00E+00 |
| 7 | GO:0010242: oxygen evolving activity | 1.33E-04 |
| 8 | GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity | 1.33E-04 |
| 9 | GO:0052631: sphingolipid delta-8 desaturase activity | 1.33E-04 |
| 10 | GO:0046429: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity | 1.33E-04 |
| 11 | GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor | 1.33E-04 |
| 12 | GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity | 1.33E-04 |
| 13 | GO:0004362: glutathione-disulfide reductase activity | 3.07E-04 |
| 14 | GO:0016868: intramolecular transferase activity, phosphotransferases | 3.07E-04 |
| 15 | GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity | 3.07E-04 |
| 16 | GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity | 3.07E-04 |
| 17 | GO:0008266: poly(U) RNA binding | 3.42E-04 |
| 18 | GO:0031409: pigment binding | 4.27E-04 |
| 19 | GO:0050833: pyruvate transmembrane transporter activity | 5.06E-04 |
| 20 | GO:0016805: dipeptidase activity | 5.06E-04 |
| 21 | GO:0004180: carboxypeptidase activity | 5.06E-04 |
| 22 | GO:0010277: chlorophyllide a oxygenase [overall] activity | 5.06E-04 |
| 23 | GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | 7.24E-04 |
| 24 | GO:0016851: magnesium chelatase activity | 7.24E-04 |
| 25 | GO:0017057: 6-phosphogluconolactonase activity | 7.24E-04 |
| 26 | GO:0008508: bile acid:sodium symporter activity | 7.24E-04 |
| 27 | GO:0019201: nucleotide kinase activity | 7.24E-04 |
| 28 | GO:0070628: proteasome binding | 9.59E-04 |
| 29 | GO:0042936: dipeptide transporter activity | 9.59E-04 |
| 30 | GO:0051538: 3 iron, 4 sulfur cluster binding | 1.21E-03 |
| 31 | GO:0016846: carbon-sulfur lyase activity | 1.21E-03 |
| 32 | GO:0031593: polyubiquitin binding | 1.49E-03 |
| 33 | GO:0004462: lactoylglutathione lyase activity | 1.49E-03 |
| 34 | GO:0015271: outward rectifier potassium channel activity | 1.49E-03 |
| 35 | GO:0004605: phosphatidate cytidylyltransferase activity | 1.49E-03 |
| 36 | GO:0004332: fructose-bisphosphate aldolase activity | 1.49E-03 |
| 37 | GO:0016168: chlorophyll binding | 1.70E-03 |
| 38 | GO:0004017: adenylate kinase activity | 1.78E-03 |
| 39 | GO:0004602: glutathione peroxidase activity | 1.78E-03 |
| 40 | GO:0004525: ribonuclease III activity | 2.42E-03 |
| 41 | GO:0005267: potassium channel activity | 2.77E-03 |
| 42 | GO:0009672: auxin:proton symporter activity | 3.50E-03 |
| 43 | GO:0005381: iron ion transmembrane transporter activity | 3.50E-03 |
| 44 | GO:0051537: 2 iron, 2 sulfur cluster binding | 3.67E-03 |
| 45 | GO:0043621: protein self-association | 3.67E-03 |
| 46 | GO:0008047: enzyme activator activity | 3.89E-03 |
| 47 | GO:0047372: acylglycerol lipase activity | 4.30E-03 |
| 48 | GO:0010329: auxin efflux transmembrane transporter activity | 5.15E-03 |
| 49 | GO:0008081: phosphoric diester hydrolase activity | 5.15E-03 |
| 50 | GO:0009982: pseudouridine synthase activity | 5.15E-03 |
| 51 | GO:0015035: protein disulfide oxidoreductase activity | 6.67E-03 |
| 52 | GO:0043130: ubiquitin binding | 7.01E-03 |
| 53 | GO:0005515: protein binding | 7.13E-03 |
| 54 | GO:0005216: ion channel activity | 7.51E-03 |
| 55 | GO:0015079: potassium ion transmembrane transporter activity | 7.51E-03 |
| 56 | GO:0004176: ATP-dependent peptidase activity | 8.02E-03 |
| 57 | GO:0033612: receptor serine/threonine kinase binding | 8.02E-03 |
| 58 | GO:0003756: protein disulfide isomerase activity | 9.63E-03 |
| 59 | GO:0003727: single-stranded RNA binding | 9.63E-03 |
| 60 | GO:0005215: transporter activity | 9.93E-03 |
| 61 | GO:0047134: protein-disulfide reductase activity | 1.02E-02 |
| 62 | GO:0046910: pectinesterase inhibitor activity | 1.05E-02 |
| 63 | GO:0008536: Ran GTPase binding | 1.13E-02 |
| 64 | GO:0004791: thioredoxin-disulfide reductase activity | 1.19E-02 |
| 65 | GO:0048038: quinone binding | 1.32E-02 |
| 66 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.44E-02 |
| 67 | GO:0051015: actin filament binding | 1.44E-02 |
| 68 | GO:0046872: metal ion binding | 1.44E-02 |
| 69 | GO:0003684: damaged DNA binding | 1.51E-02 |
| 70 | GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity | 1.57E-02 |
| 71 | GO:0005200: structural constituent of cytoskeleton | 1.57E-02 |
| 72 | GO:0003993: acid phosphatase activity | 2.52E-02 |
| 73 | GO:0050661: NADP binding | 2.68E-02 |
| 74 | GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen | 2.80E-02 |
| 75 | GO:0004185: serine-type carboxypeptidase activity | 2.92E-02 |
| 76 | GO:0005506: iron ion binding | 3.16E-02 |
| 77 | GO:0016298: lipase activity | 3.71E-02 |
| 78 | GO:0045330: aspartyl esterase activity | 3.89E-02 |
| 79 | GO:0003777: microtubule motor activity | 3.89E-02 |
| 80 | GO:0016874: ligase activity | 4.45E-02 |
| 81 | GO:0030599: pectinesterase activity | 4.45E-02 |
| 82 | GO:0003779: actin binding | 4.55E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005943: phosphatidylinositol 3-kinase complex, class IA | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 1.62E-24 |
| 3 | GO:0009534: chloroplast thylakoid | 1.87E-19 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 2.83E-18 |
| 5 | GO:0009570: chloroplast stroma | 7.52E-09 |
| 6 | GO:0009579: thylakoid | 1.23E-08 |
| 7 | GO:0010287: plastoglobule | 1.39E-08 |
| 8 | GO:0009543: chloroplast thylakoid lumen | 1.70E-08 |
| 9 | GO:0009941: chloroplast envelope | 5.97E-08 |
| 10 | GO:0030095: chloroplast photosystem II | 1.41E-07 |
| 11 | GO:0031977: thylakoid lumen | 8.65E-07 |
| 12 | GO:0009522: photosystem I | 1.84E-06 |
| 13 | GO:0009517: PSII associated light-harvesting complex II | 1.47E-05 |
| 14 | GO:0009538: photosystem I reaction center | 8.88E-05 |
| 15 | GO:0030093: chloroplast photosystem I | 3.07E-04 |
| 16 | GO:0030076: light-harvesting complex | 3.84E-04 |
| 17 | GO:0010007: magnesium chelatase complex | 5.06E-04 |
| 18 | GO:0042651: thylakoid membrane | 5.22E-04 |
| 19 | GO:0009654: photosystem II oxygen evolving complex | 5.22E-04 |
| 20 | GO:0031969: chloroplast membrane | 6.85E-04 |
| 21 | GO:0042646: plastid nucleoid | 7.24E-04 |
| 22 | GO:0032432: actin filament bundle | 7.24E-04 |
| 23 | GO:0009523: photosystem II | 1.06E-03 |
| 24 | GO:0019898: extrinsic component of membrane | 1.06E-03 |
| 25 | GO:0055035: plastid thylakoid membrane | 1.21E-03 |
| 26 | GO:0016363: nuclear matrix | 1.78E-03 |
| 27 | GO:0045298: tubulin complex | 3.13E-03 |
| 28 | GO:0005884: actin filament | 4.30E-03 |
| 29 | GO:0016021: integral component of membrane | 5.87E-03 |
| 30 | GO:0009706: chloroplast inner membrane | 6.48E-03 |
| 31 | GO:0005623: cell | 8.34E-03 |
| 32 | GO:0016020: membrane | 9.64E-03 |
| 33 | GO:0005871: kinesin complex | 1.02E-02 |
| 34 | GO:0071944: cell periphery | 1.44E-02 |
| 35 | GO:0030529: intracellular ribonucleoprotein complex | 1.71E-02 |
| 36 | GO:0005874: microtubule | 2.09E-02 |
| 37 | GO:0000325: plant-type vacuole | 2.29E-02 |