Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G02690

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0061635: regulation of protein complex stability0.00E+00
2GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
3GO:0042821: pyridoxal biosynthetic process0.00E+00
4GO:0005996: monosaccharide metabolic process0.00E+00
5GO:0007638: mechanosensory behavior0.00E+00
6GO:0042820: vitamin B6 catabolic process0.00E+00
7GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
8GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
9GO:0090042: tubulin deacetylation0.00E+00
10GO:0006437: tyrosyl-tRNA aminoacylation0.00E+00
11GO:0030388: fructose 1,6-bisphosphate metabolic process0.00E+00
12GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
13GO:0015979: photosynthesis2.87E-13
14GO:0009773: photosynthetic electron transport in photosystem I3.04E-08
15GO:0006000: fructose metabolic process6.71E-08
16GO:0009658: chloroplast organization5.07E-07
17GO:0019253: reductive pentose-phosphate cycle4.77E-06
18GO:0009735: response to cytokinin5.76E-06
19GO:0006002: fructose 6-phosphate metabolic process2.33E-05
20GO:0071482: cellular response to light stimulus2.33E-05
21GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly5.48E-05
22GO:0018119: peptidyl-cysteine S-nitrosylation6.94E-05
23GO:0006546: glycine catabolic process9.64E-05
24GO:0010037: response to carbon dioxide9.64E-05
25GO:0015976: carbon utilization9.64E-05
26GO:0019464: glycine decarboxylation via glycine cleavage system9.64E-05
27GO:2000122: negative regulation of stomatal complex development9.64E-05
28GO:0006094: gluconeogenesis1.05E-04
29GO:0005986: sucrose biosynthetic process1.05E-04
30GO:0006810: transport1.22E-04
31GO:0010207: photosystem II assembly1.26E-04
32GO:0010027: thylakoid membrane organization1.27E-04
33GO:0045454: cell redox homeostasis1.41E-04
34GO:0010190: cytochrome b6f complex assembly2.14E-04
35GO:0061077: chaperone-mediated protein folding2.67E-04
36GO:0010196: nonphotochemical quenching3.73E-04
37GO:1904966: positive regulation of vitamin E biosynthetic process4.02E-04
38GO:1904964: positive regulation of phytol biosynthetic process4.02E-04
39GO:0071588: hydrogen peroxide mediated signaling pathway4.02E-04
40GO:0009443: pyridoxal 5'-phosphate salvage4.02E-04
41GO:0016117: carotenoid biosynthetic process4.23E-04
42GO:0009657: plastid organization5.69E-04
43GO:0032544: plastid translation5.69E-04
44GO:0006779: porphyrin-containing compound biosynthetic process8.05E-04
45GO:1902326: positive regulation of chlorophyll biosynthetic process8.71E-04
46GO:2000123: positive regulation of stomatal complex development8.71E-04
47GO:0010270: photosystem II oxygen evolving complex assembly8.71E-04
48GO:0010275: NAD(P)H dehydrogenase complex assembly8.71E-04
49GO:0043039: tRNA aminoacylation8.71E-04
50GO:0009409: response to cold9.86E-04
51GO:0043085: positive regulation of catalytic activity1.08E-03
52GO:0006352: DNA-templated transcription, initiation1.08E-03
53GO:0006415: translational termination1.08E-03
54GO:0006816: calcium ion transport1.08E-03
55GO:0006508: proteolysis1.27E-03
56GO:0042742: defense response to bacterium1.38E-03
57GO:0009767: photosynthetic electron transport chain1.40E-03
58GO:0006518: peptide metabolic process1.41E-03
59GO:0010581: regulation of starch biosynthetic process1.41E-03
60GO:0071492: cellular response to UV-A1.41E-03
61GO:0006696: ergosterol biosynthetic process1.41E-03
62GO:0090506: axillary shoot meristem initiation1.41E-03
63GO:0018298: protein-chromophore linkage1.50E-03
64GO:0010020: chloroplast fission1.57E-03
65GO:0090351: seedling development1.76E-03
66GO:0009853: photorespiration2.03E-03
67GO:0016556: mRNA modification2.04E-03
68GO:0043572: plastid fission2.04E-03
69GO:2001141: regulation of RNA biosynthetic process2.04E-03
70GO:0006020: inositol metabolic process2.04E-03
71GO:0007231: osmosensory signaling pathway2.04E-03
72GO:0033014: tetrapyrrole biosynthetic process2.04E-03
73GO:0055114: oxidation-reduction process2.38E-03
74GO:0009768: photosynthesis, light harvesting in photosystem I2.41E-03
75GO:0006418: tRNA aminoacylation for protein translation2.41E-03
76GO:2000038: regulation of stomatal complex development2.74E-03
77GO:0006021: inositol biosynthetic process2.74E-03
78GO:0071483: cellular response to blue light2.74E-03
79GO:0009902: chloroplast relocation2.74E-03
80GO:0006542: glutamine biosynthetic process2.74E-03
81GO:0019676: ammonia assimilation cycle2.74E-03
82GO:0071486: cellular response to high light intensity2.74E-03
83GO:0009765: photosynthesis, light harvesting2.74E-03
84GO:0045727: positive regulation of translation2.74E-03
85GO:0015994: chlorophyll metabolic process2.74E-03
86GO:0033500: carbohydrate homeostasis2.74E-03
87GO:0080092: regulation of pollen tube growth2.90E-03
88GO:0016120: carotene biosynthetic process3.51E-03
89GO:0006564: L-serine biosynthetic process3.51E-03
90GO:0006656: phosphatidylcholine biosynthetic process3.51E-03
91GO:0031365: N-terminal protein amino acid modification3.51E-03
92GO:0006461: protein complex assembly3.51E-03
93GO:0016123: xanthophyll biosynthetic process3.51E-03
94GO:0010375: stomatal complex patterning3.51E-03
95GO:0080110: sporopollenin biosynthetic process3.51E-03
96GO:0046686: response to cadmium ion3.98E-03
97GO:0006828: manganese ion transport4.35E-03
98GO:0046855: inositol phosphate dephosphorylation4.35E-03
99GO:0009635: response to herbicide4.35E-03
100GO:0042549: photosystem II stabilization4.35E-03
101GO:0016554: cytidine to uridine editing4.35E-03
102GO:0010067: procambium histogenesis5.24E-03
103GO:0042026: protein refolding5.24E-03
104GO:0006458: 'de novo' protein folding5.24E-03
105GO:0009854: oxidative photosynthetic carbon pathway5.24E-03
106GO:0010019: chloroplast-nucleus signaling pathway5.24E-03
107GO:0009645: response to low light intensity stimulus6.19E-03
108GO:0006400: tRNA modification6.19E-03
109GO:0009819: drought recovery7.20E-03
110GO:0008610: lipid biosynthetic process7.20E-03
111GO:0080167: response to karrikin7.65E-03
112GO:0017004: cytochrome complex assembly8.26E-03
113GO:0019430: removal of superoxide radicals8.26E-03
114GO:0015995: chlorophyll biosynthetic process9.16E-03
115GO:0010206: photosystem II repair9.38E-03
116GO:0006783: heme biosynthetic process9.38E-03
117GO:0000373: Group II intron splicing9.38E-03
118GO:0090305: nucleic acid phosphodiester bond hydrolysis9.38E-03
119GO:0009817: defense response to fungus, incompatible interaction1.02E-02
120GO:1900865: chloroplast RNA modification1.06E-02
121GO:0010380: regulation of chlorophyll biosynthetic process1.06E-02
122GO:0000160: phosphorelay signal transduction system1.07E-02
123GO:0009407: toxin catabolic process1.12E-02
124GO:0006782: protoporphyrinogen IX biosynthetic process1.18E-02
125GO:0006535: cysteine biosynthetic process from serine1.18E-02
126GO:0043069: negative regulation of programmed cell death1.18E-02
127GO:0010119: regulation of stomatal movement1.18E-02
128GO:0009073: aromatic amino acid family biosynthetic process1.30E-02
129GO:0000272: polysaccharide catabolic process1.30E-02
130GO:0009750: response to fructose1.30E-02
131GO:0019684: photosynthesis, light reaction1.30E-02
132GO:0009089: lysine biosynthetic process via diaminopimelate1.30E-02
133GO:0034599: cellular response to oxidative stress1.35E-02
134GO:0005983: starch catabolic process1.44E-02
135GO:0045037: protein import into chloroplast stroma1.44E-02
136GO:0006790: sulfur compound metabolic process1.44E-02
137GO:0010223: secondary shoot formation1.71E-02
138GO:0009644: response to high light intensity1.81E-02
139GO:0005985: sucrose metabolic process1.86E-02
140GO:0070588: calcium ion transmembrane transport1.86E-02
141GO:0046854: phosphatidylinositol phosphorylation1.86E-02
142GO:0006636: unsaturated fatty acid biosynthetic process2.01E-02
143GO:0019762: glucosinolate catabolic process2.01E-02
144GO:0019344: cysteine biosynthetic process2.16E-02
145GO:0009736: cytokinin-activated signaling pathway2.25E-02
146GO:0016575: histone deacetylation2.32E-02
147GO:0051603: proteolysis involved in cellular protein catabolic process2.33E-02
148GO:0006730: one-carbon metabolic process2.64E-02
149GO:0019748: secondary metabolic process2.64E-02
150GO:0016226: iron-sulfur cluster assembly2.64E-02
151GO:0006096: glycolytic process2.67E-02
152GO:0009294: DNA mediated transformation2.81E-02
153GO:0001944: vasculature development2.81E-02
154GO:0010089: xylem development2.99E-02
155GO:0010584: pollen exine formation2.99E-02
156GO:0009416: response to light stimulus3.24E-02
157GO:0010087: phloem or xylem histogenesis3.34E-02
158GO:0042631: cellular response to water deprivation3.34E-02
159GO:0006662: glycerol ether metabolic process3.53E-02
160GO:0048544: recognition of pollen3.71E-02
161GO:0006814: sodium ion transport3.71E-02
162GO:0019252: starch biosynthetic process3.90E-02
163GO:0000302: response to reactive oxygen species4.09E-02
164GO:1901657: glycosyl compound metabolic process4.49E-02
165GO:0032259: methylation4.52E-02
166GO:0042744: hydrogen peroxide catabolic process4.56E-02
167GO:0055085: transmembrane transport4.57E-02
168GO:0019760: glucosinolate metabolic process4.69E-02
169GO:0007267: cell-cell signaling4.90E-02
RankGO TermAdjusted P value
1GO:0008887: glycerate kinase activity0.00E+00
2GO:0008962: phosphatidylglycerophosphatase activity0.00E+00
3GO:0051721: protein phosphatase 2A binding0.00E+00
4GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
5GO:0043014: alpha-tubulin binding0.00E+00
6GO:0042903: tubulin deacetylase activity0.00E+00
7GO:0045435: lycopene epsilon cyclase activity0.00E+00
8GO:0004822: isoleucine-tRNA ligase activity0.00E+00
9GO:0046905: phytoene synthase activity0.00E+00
10GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
11GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
12GO:0051738: xanthophyll binding0.00E+00
13GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
14GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
15GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity0.00E+00
16GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
17GO:0052667: phosphomethylethanolamine N-methyltransferase activity0.00E+00
18GO:0004033: aldo-keto reductase (NADP) activity2.25E-07
19GO:0051920: peroxiredoxin activity6.88E-06
20GO:0004618: phosphoglycerate kinase activity7.22E-06
21GO:0005528: FK506 binding9.98E-06
22GO:0016168: chlorophyll binding9.99E-06
23GO:0016209: antioxidant activity1.64E-05
24GO:0016149: translation release factor activity, codon specific5.48E-05
25GO:0004375: glycine dehydrogenase (decarboxylating) activity5.48E-05
26GO:0003755: peptidyl-prolyl cis-trans isomerase activity7.63E-05
27GO:0001053: plastid sigma factor activity9.64E-05
28GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor9.64E-05
29GO:0016987: sigma factor activity9.64E-05
30GO:0031072: heat shock protein binding1.05E-04
31GO:0003959: NADPH dehydrogenase activity1.50E-04
32GO:0004222: metalloendopeptidase activity2.40E-04
33GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity2.88E-04
34GO:0022891: substrate-specific transmembrane transporter activity3.40E-04
35GO:0004831: tyrosine-tRNA ligase activity4.02E-04
36GO:0045157: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity4.02E-04
37GO:0004325: ferrochelatase activity4.02E-04
38GO:0051996: squalene synthase activity4.02E-04
39GO:0047259: glucomannan 4-beta-mannosyltransferase activity4.02E-04
40GO:0080132: fatty acid alpha-hydroxylase activity4.02E-04
41GO:0003747: translation release factor activity6.82E-04
42GO:0008934: inositol monophosphate 1-phosphatase activity8.71E-04
43GO:0052833: inositol monophosphate 4-phosphatase activity8.71E-04
44GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase8.71E-04
45GO:0004310: farnesyl-diphosphate farnesyltransferase activity8.71E-04
46GO:0000234: phosphoethanolamine N-methyltransferase activity8.71E-04
47GO:0008967: phosphoglycolate phosphatase activity8.71E-04
48GO:0050017: L-3-cyanoalanine synthase activity8.71E-04
49GO:0047746: chlorophyllase activity8.71E-04
50GO:0042389: omega-3 fatty acid desaturase activity8.71E-04
51GO:0010297: heteropolysaccharide binding8.71E-04
52GO:0004326: tetrahydrofolylpolyglutamate synthase activity8.71E-04
53GO:0004617: phosphoglycerate dehydrogenase activity8.71E-04
54GO:0004047: aminomethyltransferase activity8.71E-04
55GO:0052832: inositol monophosphate 3-phosphatase activity8.71E-04
56GO:0016630: protochlorophyllide reductase activity8.71E-04
57GO:0008047: enzyme activator activity9.37E-04
58GO:0005089: Rho guanyl-nucleotide exchange factor activity1.08E-03
59GO:0016787: hydrolase activity1.20E-03
60GO:0051082: unfolded protein binding1.23E-03
61GO:0004089: carbonate dehydratase activity1.40E-03
62GO:0002161: aminoacyl-tRNA editing activity1.41E-03
63GO:0004148: dihydrolipoyl dehydrogenase activity1.41E-03
64GO:0070402: NADPH binding1.41E-03
65GO:0004324: ferredoxin-NADP+ reductase activity1.41E-03
66GO:0046872: metal ion binding1.47E-03
67GO:0019843: rRNA binding1.73E-03
68GO:0031409: pigment binding1.97E-03
69GO:0048487: beta-tubulin binding2.04E-03
70GO:0008508: bile acid:sodium symporter activity2.04E-03
71GO:0016491: oxidoreductase activity2.67E-03
72GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity2.74E-03
73GO:0043495: protein anchor2.74E-03
74GO:0004659: prenyltransferase activity2.74E-03
75GO:0005319: lipid transporter activity2.74E-03
76GO:1990137: plant seed peroxidase activity2.74E-03
77GO:0016773: phosphotransferase activity, alcohol group as acceptor3.51E-03
78GO:0004356: glutamate-ammonia ligase activity3.51E-03
79GO:0008374: O-acyltransferase activity3.51E-03
80GO:0004812: aminoacyl-tRNA ligase activity3.73E-03
81GO:0004130: cytochrome-c peroxidase activity4.35E-03
82GO:0016688: L-ascorbate peroxidase activity4.35E-03
83GO:0042578: phosphoric ester hydrolase activity4.35E-03
84GO:0008200: ion channel inhibitor activity4.35E-03
85GO:0080030: methyl indole-3-acetate esterase activity4.35E-03
86GO:0050662: coenzyme binding4.67E-03
87GO:0004791: thioredoxin-disulfide reductase activity4.67E-03
88GO:0004723: calcium-dependent protein serine/threonine phosphatase activity5.24E-03
89GO:0004124: cysteine synthase activity5.24E-03
90GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity5.24E-03
91GO:0051753: mannan synthase activity5.24E-03
92GO:0048038: quinone binding5.36E-03
93GO:0000156: phosphorelay response regulator activity6.11E-03
94GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor6.11E-03
95GO:0019899: enzyme binding6.19E-03
96GO:0008235: metalloexopeptidase activity6.19E-03
97GO:0008237: metallopeptidase activity6.91E-03
98GO:0016597: amino acid binding7.34E-03
99GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water8.26E-03
100GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)8.26E-03
101GO:0008236: serine-type peptidase activity9.66E-03
102GO:0005509: calcium ion binding1.05E-02
103GO:0005384: manganese ion transmembrane transporter activity1.06E-02
104GO:0030234: enzyme regulator activity1.18E-02
105GO:0015386: potassium:proton antiporter activity1.30E-02
106GO:0004177: aminopeptidase activity1.30E-02
107GO:0044183: protein binding involved in protein folding1.30E-02
108GO:0000049: tRNA binding1.44E-02
109GO:0016740: transferase activity1.44E-02
110GO:0003824: catalytic activity1.46E-02
111GO:0004565: beta-galactosidase activity1.57E-02
112GO:0015095: magnesium ion transmembrane transporter activity1.57E-02
113GO:0005262: calcium channel activity1.57E-02
114GO:0004364: glutathione transferase activity1.60E-02
115GO:0004185: serine-type carboxypeptidase activity1.67E-02
116GO:0008266: poly(U) RNA binding1.71E-02
117GO:0042802: identical protein binding1.76E-02
118GO:0051537: 2 iron, 2 sulfur cluster binding1.81E-02
119GO:0051536: iron-sulfur cluster binding2.16E-02
120GO:0004407: histone deacetylase activity2.16E-02
121GO:0003899: DNA-directed 5'-3' RNA polymerase activity2.25E-02
122GO:0004601: peroxidase activity2.25E-02
123GO:0015079: potassium ion transmembrane transporter activity2.32E-02
124GO:0008324: cation transmembrane transporter activity2.32E-02
125GO:0043424: protein histidine kinase binding2.32E-02
126GO:0004176: ATP-dependent peptidase activity2.48E-02
127GO:0033612: receptor serine/threonine kinase binding2.48E-02
128GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups2.75E-02
129GO:0003756: protein disulfide isomerase activity2.99E-02
130GO:0047134: protein-disulfide reductase activity3.16E-02
131GO:0005102: receptor binding3.16E-02
132GO:0019901: protein kinase binding3.90E-02
133GO:0004518: nuclease activity4.29E-02
134GO:0004197: cysteine-type endopeptidase activity4.29E-02
135GO:0016759: cellulose synthase activity4.69E-02
136GO:0008483: transaminase activity4.90E-02
RankGO TermAdjusted P value
1GO:0009575: chromoplast stroma0.00E+00
2GO:0009571: proplastid stroma0.00E+00
3GO:0009507: chloroplast8.25E-72
4GO:0009535: chloroplast thylakoid membrane5.17E-36
5GO:0009941: chloroplast envelope8.90E-31
6GO:0009570: chloroplast stroma5.23E-29
7GO:0009579: thylakoid6.53E-17
8GO:0009543: chloroplast thylakoid lumen2.19E-15
9GO:0009534: chloroplast thylakoid3.50E-11
10GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)5.45E-11
11GO:0031977: thylakoid lumen6.04E-09
12GO:0010319: stromule2.52E-07
13GO:0009523: photosystem II2.73E-06
14GO:0030095: chloroplast photosystem II4.77E-06
15GO:0031969: chloroplast membrane1.20E-05
16GO:0042651: thylakoid membrane1.24E-05
17GO:0009654: photosystem II oxygen evolving complex1.24E-05
18GO:0009706: chloroplast inner membrane2.57E-05
19GO:0048046: apoplast3.02E-05
20GO:0010287: plastoglobule4.05E-05
21GO:0005960: glycine cleavage complex5.48E-05
22GO:0019898: extrinsic component of membrane5.62E-05
23GO:0009533: chloroplast stromal thylakoid3.73E-04
24GO:0009344: nitrite reductase complex [NAD(P)H]4.02E-04
25GO:0009782: photosystem I antenna complex4.02E-04
26GO:0043190: ATP-binding cassette (ABC) transporter complex4.02E-04
27GO:0042170: plastid membrane8.71E-04
28GO:0000427: plastid-encoded plastid RNA polymerase complex8.71E-04
29GO:0030076: light-harvesting complex1.76E-03
30GO:0009517: PSII associated light-harvesting complex II2.74E-03
31GO:0055035: plastid thylakoid membrane3.51E-03
32GO:0009536: plastid6.51E-03
33GO:0005811: lipid particle8.26E-03
34GO:0009707: chloroplast outer membrane1.02E-02
35GO:0015934: large ribosomal subunit1.18E-02
36GO:0016324: apical plasma membrane1.18E-02
37GO:0005840: ribosome1.34E-02
38GO:0000311: plastid large ribosomal subunit1.44E-02
39GO:0009508: plastid chromosome1.57E-02
40GO:0005764: lysosome1.71E-02
41GO:0009532: plastid stroma2.48E-02
42GO:0009522: photosystem I3.71E-02
43GO:0005623: cell4.12E-02
44GO:0009295: nucleoid4.90E-02
45GO:0005778: peroxisomal membrane4.90E-02
Gene type



Gene DE type