co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G02630

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0000390: spliceosomal complex disassembly	0.00E+00
2	GO:0043171: peptide catabolic process	0.00E+00
3	GO:0012502: induction of programmed cell death	0.00E+00
4	GO:0060213: positive regulation of nuclear-transcribed mRNA poly(A) tail shortening	0.00E+00
5	GO:0010378: temperature compensation of the circadian clock	0.00E+00
6	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
7	GO:0009768: photosynthesis, light harvesting in photosystem I	4.36E-08
8	GO:0018298: protein-chromophore linkage	2.48E-06
9	GO:0009645: response to low light intensity stimulus	2.93E-06
10	GO:0009409: response to cold	3.33E-06
11	GO:0010218: response to far red light	6.19E-05
12	GO:0000380: alternative mRNA splicing, via spliceosome	6.36E-05
13	GO:0042542: response to hydrogen peroxide	1.19E-04
14	GO:0007623: circadian rhythm	1.39E-04
15	GO:0009644: response to high light intensity	1.47E-04
16	GO:0009769: photosynthesis, light harvesting in photosystem II	1.69E-04
17	GO:0009819: drought recovery	2.16E-04
18	GO:0000291: nuclear-transcribed mRNA catabolic process, exonucleolytic	2.39E-04
19	GO:1990641: response to iron ion starvation	2.39E-04
20	GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic	2.39E-04
21	GO:1902265: abscisic acid homeostasis	2.39E-04
22	GO:0015812: gamma-aminobutyric acid transport	2.39E-04
23	GO:0032958: inositol phosphate biosynthetic process	2.39E-04
24	GO:0015914: phospholipid transport	5.29E-04
25	GO:0006611: protein export from nucleus	5.29E-04
26	GO:0032509: endosome transport via multivesicular body sorting pathway	5.29E-04
27	GO:0006101: citrate metabolic process	5.29E-04
28	GO:0051170: nuclear import	5.29E-04
29	GO:0030003: cellular cation homeostasis	5.29E-04
30	GO:0045948: positive regulation of translational initiation	5.29E-04
31	GO:0048209: regulation of vesicle targeting, to, from or within Golgi	5.29E-04
32	GO:0001736: establishment of planar polarity	5.29E-04
33	GO:0009817: defense response to fungus, incompatible interaction	5.78E-04
34	GO:0015979: photosynthesis	6.18E-04
35	GO:0009637: response to blue light	7.79E-04
36	GO:0000055: ribosomal large subunit export from nucleus	8.60E-04
37	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	8.60E-04
38	GO:0042256: mature ribosome assembly	8.60E-04
39	GO:0042344: indole glucosinolate catabolic process	8.60E-04
40	GO:0032012: regulation of ARF protein signal transduction	8.60E-04
41	GO:0006954: inflammatory response	8.60E-04
42	GO:0016255: attachment of GPI anchor to protein	8.60E-04
43	GO:0006598: polyamine catabolic process	8.60E-04
44	GO:0006278: RNA-dependent DNA biosynthetic process	8.60E-04
45	GO:0042780: tRNA 3'-end processing	8.60E-04
46	GO:0010114: response to red light	1.07E-03
47	GO:0006020: inositol metabolic process	1.23E-03
48	GO:0010601: positive regulation of auxin biosynthetic process	1.23E-03
49	GO:0015749: monosaccharide transport	1.23E-03
50	GO:0051601: exocyst localization	1.23E-03
51	GO:0009561: megagametogenesis	1.61E-03
52	GO:0009687: abscisic acid metabolic process	1.64E-03
53	GO:0015743: malate transport	1.64E-03
54	GO:0051365: cellular response to potassium ion starvation	1.64E-03
55	GO:0009765: photosynthesis, light harvesting	1.64E-03
56	GO:0042273: ribosomal large subunit biogenesis	1.64E-03
57	GO:0030104: water homeostasis	1.64E-03
58	GO:0010508: positive regulation of autophagy	1.64E-03
59	GO:0006646: phosphatidylethanolamine biosynthetic process	1.64E-03
60	GO:0010501: RNA secondary structure unwinding	1.89E-03
61	GO:0007029: endoplasmic reticulum organization	2.09E-03
62	GO:0048578: positive regulation of long-day photoperiodism, flowering	2.09E-03
63	GO:0006656: phosphatidylcholine biosynthetic process	2.09E-03
64	GO:0042752: regulation of circadian rhythm	2.18E-03
65	GO:0080167: response to karrikin	2.37E-03
66	GO:0009738: abscisic acid-activated signaling pathway	2.50E-03
67	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	2.57E-03
68	GO:0031053: primary miRNA processing	2.57E-03
69	GO:0045040: protein import into mitochondrial outer membrane	2.57E-03
70	GO:0000741: karyogamy	2.57E-03
71	GO:0009416: response to light stimulus	2.65E-03
72	GO:0000911: cytokinesis by cell plate formation	3.09E-03
73	GO:0045926: negative regulation of growth	3.09E-03
74	GO:0009942: longitudinal axis specification	3.09E-03
75	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	3.09E-03
76	GO:0009911: positive regulation of flower development	3.61E-03
77	GO:0048437: floral organ development	3.64E-03
78	GO:0009737: response to abscisic acid	4.00E-03
79	GO:0006102: isocitrate metabolic process	4.23E-03
80	GO:0007155: cell adhesion	4.23E-03
81	GO:0009061: anaerobic respiration	4.23E-03
82	GO:0009415: response to water	4.23E-03
83	GO:0032508: DNA duplex unwinding	4.23E-03
84	GO:0048573: photoperiodism, flowering	4.25E-03
85	GO:0006950: response to stress	4.25E-03
86	GO:0009880: embryonic pattern specification	4.84E-03
87	GO:0060321: acceptance of pollen	4.84E-03
88	GO:0001510: RNA methylation	4.84E-03
89	GO:0006367: transcription initiation from RNA polymerase II promoter	4.84E-03
90	GO:0010228: vegetative to reproductive phase transition of meristem	5.14E-03
91	GO:0006811: ion transport	5.18E-03
92	GO:0010043: response to zinc ion	5.43E-03
93	GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	5.48E-03
94	GO:0090333: regulation of stomatal closure	5.48E-03
95	GO:0046916: cellular transition metal ion homeostasis	5.48E-03
96	GO:0045087: innate immune response	5.96E-03
97	GO:0090332: stomatal closure	6.15E-03
98	GO:0030042: actin filament depolymerization	6.15E-03
99	GO:0009970: cellular response to sulfate starvation	6.85E-03
100	GO:0006995: cellular response to nitrogen starvation	6.85E-03
101	GO:0006816: calcium ion transport	7.58E-03
102	GO:0009682: induced systemic resistance	7.58E-03
103	GO:0052544: defense response by callose deposition in cell wall	7.58E-03
104	GO:0048765: root hair cell differentiation	7.58E-03
105	GO:0008643: carbohydrate transport	8.31E-03
106	GO:0016925: protein sumoylation	8.33E-03
107	GO:0009414: response to water deprivation	8.72E-03
108	GO:2000012: regulation of auxin polar transport	9.11E-03
109	GO:0010102: lateral root morphogenesis	9.11E-03
110	GO:0006626: protein targeting to mitochondrion	9.11E-03
111	GO:0006970: response to osmotic stress	9.29E-03
112	GO:0010540: basipetal auxin transport	9.92E-03
113	GO:0007034: vacuolar transport	9.92E-03
114	GO:0007015: actin filament organization	9.92E-03
115	GO:0009651: response to salt stress	1.06E-02
116	GO:0019853: L-ascorbic acid biosynthetic process	1.07E-02
117	GO:0010030: positive regulation of seed germination	1.07E-02
118	GO:0035556: intracellular signal transduction	1.11E-02
119	GO:0007165: signal transduction	1.13E-02
120	GO:0016192: vesicle-mediated transport	1.19E-02
121	GO:0044550: secondary metabolite biosynthetic process	1.24E-02
122	GO:0006406: mRNA export from nucleus	1.25E-02
123	GO:0016575: histone deacetylation	1.34E-02
124	GO:0006874: cellular calcium ion homeostasis	1.34E-02
125	GO:0009695: jasmonic acid biosynthetic process	1.34E-02
126	GO:0048511: rhythmic process	1.43E-02
127	GO:0009269: response to desiccation	1.43E-02
128	GO:0003333: amino acid transmembrane transport	1.43E-02
129	GO:0009553: embryo sac development	1.44E-02
130	GO:0019748: secondary metabolic process	1.53E-02
131	GO:0006012: galactose metabolic process	1.62E-02
132	GO:0071215: cellular response to abscisic acid stimulus	1.62E-02
133	GO:0000398: mRNA splicing, via spliceosome	1.71E-02
134	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.82E-02
135	GO:0042147: retrograde transport, endosome to Golgi	1.82E-02
136	GO:0000226: microtubule cytoskeleton organization	1.93E-02
137	GO:0042391: regulation of membrane potential	1.93E-02
138	GO:0000413: protein peptidyl-prolyl isomerization	1.93E-02
139	GO:0010087: phloem or xylem histogenesis	1.93E-02
140	GO:0046323: glucose import	2.03E-02
141	GO:0010197: polar nucleus fusion	2.03E-02
142	GO:0006814: sodium ion transport	2.14E-02
143	GO:0048544: recognition of pollen	2.14E-02
144	GO:0009556: microsporogenesis	2.25E-02
145	GO:0009791: post-embryonic development	2.25E-02
146	GO:0008654: phospholipid biosynthetic process	2.25E-02
147	GO:0006635: fatty acid beta-oxidation	2.36E-02
148	GO:1901657: glycosyl compound metabolic process	2.59E-02
149	GO:0019760: glucosinolate metabolic process	2.71E-02
150	GO:0006914: autophagy	2.71E-02
151	GO:0010286: heat acclimation	2.83E-02
152	GO:0010468: regulation of gene expression	3.06E-02
153	GO:0008380: RNA splicing	3.06E-02
154	GO:0009617: response to bacterium	3.06E-02
155	GO:0001666: response to hypoxia	3.07E-02
156	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	3.19E-02
157	GO:0010029: regulation of seed germination	3.19E-02
158	GO:0009908: flower development	3.30E-02
159	GO:0016049: cell growth	3.58E-02
160	GO:0048481: plant ovule development	3.71E-02
161	GO:0000160: phosphorelay signal transduction system	3.84E-02
162	GO:0010311: lateral root formation	3.84E-02
163	GO:0009834: plant-type secondary cell wall biogenesis	3.97E-02
164	GO:0010119: regulation of stomatal movement	4.11E-02
165	GO:0009631: cold acclimation	4.11E-02
166	GO:0016051: carbohydrate biosynthetic process	4.39E-02
167	GO:0006099: tricarboxylic acid cycle	4.53E-02
168	GO:0030001: metal ion transport	4.81E-02
169	GO:0006839: mitochondrial transport	4.81E-02
170	GO:0006887: exocytosis	4.95E-02
171	GO:0006897: endocytosis	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
2	GO:1990446: U1 snRNP binding	0.00E+00
3	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
4	GO:0005272: sodium channel activity	0.00E+00
5	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
6	GO:0080082: esculin beta-glucosidase activity	0.00E+00
7	GO:0010292: GTP:GDP antiporter activity	0.00E+00
8	GO:0004567: beta-mannosidase activity	0.00E+00
9	GO:0005358: high-affinity hydrogen:glucose symporter activity	0.00E+00
10	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
11	GO:0016428: tRNA (cytosine-5-)-methyltransferase activity	0.00E+00
12	GO:0031409: pigment binding	2.39E-08
13	GO:0016168: chlorophyll binding	1.41E-06
14	GO:0009679: hexose:proton symporter activity	2.39E-04
15	GO:0000829: inositol heptakisphosphate kinase activity	2.39E-04
16	GO:0010013: N-1-naphthylphthalamic acid binding	2.39E-04
17	GO:0080079: cellobiose glucosidase activity	2.39E-04
18	GO:0008692: 3-hydroxybutyryl-CoA epimerase activity	2.39E-04
19	GO:0046870: cadmium ion binding	2.39E-04
20	GO:0000828: inositol hexakisphosphate kinase activity	2.39E-04
21	GO:0016274: protein-arginine N-methyltransferase activity	2.39E-04
22	GO:0070006: metalloaminopeptidase activity	2.39E-04
23	GO:0015185: gamma-aminobutyric acid transmembrane transporter activity	2.39E-04
24	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	2.39E-04
25	GO:0004177: aminopeptidase activity	5.19E-04
26	GO:0005515: protein binding	5.24E-04
27	GO:0016891: endoribonuclease activity, producing 5'-phosphomonoesters	5.29E-04
28	GO:0004609: phosphatidylserine decarboxylase activity	5.29E-04
29	GO:0003994: aconitate hydratase activity	5.29E-04
30	GO:0003857: 3-hydroxyacyl-CoA dehydrogenase activity	5.29E-04
31	GO:0004839: ubiquitin activating enzyme activity	5.29E-04
32	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	5.29E-04
33	GO:0003923: GPI-anchor transamidase activity	5.29E-04
34	GO:0015180: L-alanine transmembrane transporter activity	5.29E-04
35	GO:0001047: core promoter binding	5.29E-04
36	GO:0032791: lead ion binding	5.29E-04
37	GO:0046592: polyamine oxidase activity	8.60E-04
38	GO:0019948: SUMO activating enzyme activity	8.60E-04
39	GO:0017150: tRNA dihydrouridine synthase activity	8.60E-04
40	GO:0042781: 3'-tRNA processing endoribonuclease activity	8.60E-04
41	GO:0004096: catalase activity	8.60E-04
42	GO:0004300: enoyl-CoA hydratase activity	1.23E-03
43	GO:0015189: L-lysine transmembrane transporter activity	1.23E-03
44	GO:0048027: mRNA 5'-UTR binding	1.23E-03
45	GO:0000285: 1-phosphatidylinositol-3-phosphate 5-kinase activity	1.23E-03
46	GO:0015181: arginine transmembrane transporter activity	1.23E-03
47	GO:0043023: ribosomal large subunit binding	1.23E-03
48	GO:0004165: dodecenoyl-CoA delta-isomerase activity	1.23E-03
49	GO:0004737: pyruvate decarboxylase activity	1.64E-03
50	GO:0005086: ARF guanyl-nucleotide exchange factor activity	1.64E-03
51	GO:0005313: L-glutamate transmembrane transporter activity	1.64E-03
52	GO:0008526: phosphatidylinositol transporter activity	1.64E-03
53	GO:0005253: anion channel activity	1.64E-03
54	GO:0042277: peptide binding	1.64E-03
55	GO:0010294: abscisic acid glucosyltransferase activity	2.09E-03
56	GO:0015145: monosaccharide transmembrane transporter activity	2.09E-03
57	GO:0008641: small protein activating enzyme activity	2.09E-03
58	GO:0030976: thiamine pyrophosphate binding	2.57E-03
59	GO:0004629: phospholipase C activity	2.57E-03
60	GO:0015562: efflux transmembrane transporter activity	2.57E-03
61	GO:0019137: thioglucosidase activity	2.57E-03
62	GO:0000293: ferric-chelate reductase activity	2.57E-03
63	GO:0031369: translation initiation factor binding	2.57E-03
64	GO:0003950: NAD+ ADP-ribosyltransferase activity	3.09E-03
65	GO:0005261: cation channel activity	3.09E-03
66	GO:0004435: phosphatidylinositol phospholipase C activity	3.09E-03
67	GO:0016831: carboxy-lyase activity	3.64E-03
68	GO:0009881: photoreceptor activity	3.64E-03
69	GO:0015140: malate transmembrane transporter activity	3.64E-03
70	GO:0004033: aldo-keto reductase (NADP) activity	4.23E-03
71	GO:0004525: ribonuclease III activity	4.23E-03
72	GO:0102483: scopolin beta-glucosidase activity	4.25E-03
73	GO:0005267: potassium channel activity	4.84E-03
74	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	4.84E-03
75	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	5.48E-03
76	GO:0003697: single-stranded DNA binding	5.96E-03
77	GO:0008422: beta-glucosidase activity	6.50E-03
78	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	6.85E-03
79	GO:0015020: glucuronosyltransferase activity	6.85E-03
80	GO:0005262: calcium channel activity	9.11E-03
81	GO:0008131: primary amine oxidase activity	9.92E-03
82	GO:0030552: cAMP binding	1.07E-02
83	GO:0030553: cGMP binding	1.07E-02
84	GO:0004970: ionotropic glutamate receptor activity	1.07E-02
85	GO:0005217: intracellular ligand-gated ion channel activity	1.07E-02
86	GO:0004407: histone deacetylase activity	1.25E-02
87	GO:0051087: chaperone binding	1.34E-02
88	GO:0043424: protein histidine kinase binding	1.34E-02
89	GO:0005216: ion channel activity	1.34E-02
90	GO:0008324: cation transmembrane transporter activity	1.34E-02
91	GO:0019706: protein-cysteine S-palmitoyltransferase activity	1.43E-02
92	GO:0004707: MAP kinase activity	1.43E-02
93	GO:0003964: RNA-directed DNA polymerase activity	1.43E-02
94	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	1.54E-02
95	GO:0004722: protein serine/threonine phosphatase activity	1.57E-02
96	GO:0003727: single-stranded RNA binding	1.72E-02
97	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.91E-02
98	GO:0005249: voltage-gated potassium channel activity	1.93E-02
99	GO:0030551: cyclic nucleotide binding	1.93E-02
100	GO:0015297: antiporter activity	2.45E-02
101	GO:0000156: phosphorelay response regulator activity	2.59E-02
102	GO:0042802: identical protein binding	3.26E-02
103	GO:0008375: acetylglucosaminyltransferase activity	3.32E-02
104	GO:0004004: ATP-dependent RNA helicase activity	3.45E-02
105	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.71E-02
106	GO:0046872: metal ion binding	3.96E-02
107	GO:0050897: cobalt ion binding	4.11E-02
108	GO:0003746: translation elongation factor activity	4.39E-02
109	GO:0000149: SNARE binding	4.67E-02
110	GO:0004842: ubiquitin-protein transferase activity	4.68E-02
111	GO:0051539: 4 iron, 4 sulfur cluster binding	4.81E-02
112	GO:0004497: monooxygenase activity	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0031981: nuclear lumen	0.00E+00
2	GO:0071008: U2-type post-mRNA release spliceosomal complex	0.00E+00
3	GO:0030076: light-harvesting complex	1.72E-08
4	GO:0005777: peroxisome	4.83E-06
5	GO:0009522: photosystem I	1.06E-05
6	GO:0010287: plastoglobule	6.23E-05
7	GO:0009523: photosystem II	2.29E-04
8	GO:0005886: plasma membrane	5.26E-04
9	GO:0032777: Piccolo NuA4 histone acetyltransferase complex	5.29E-04
10	GO:0016020: membrane	7.84E-04
11	GO:0042765: GPI-anchor transamidase complex	8.60E-04
12	GO:0005783: endoplasmic reticulum	1.41E-03
13	GO:0010445: nuclear dicing body	1.64E-03
14	GO:0009517: PSII associated light-harvesting complex II	1.64E-03
15	GO:0005851: eukaryotic translation initiation factor 2B complex	2.57E-03
16	GO:0000815: ESCRT III complex	3.09E-03
17	GO:0016363: nuclear matrix	3.09E-03
18	GO:0009579: thylakoid	3.63E-03
19	GO:0030687: preribosome, large subunit precursor	3.64E-03
20	GO:0009534: chloroplast thylakoid	3.69E-03
21	GO:0009506: plasmodesma	3.97E-03
22	GO:0005742: mitochondrial outer membrane translocase complex	4.84E-03
23	GO:0005680: anaphase-promoting complex	5.48E-03
24	GO:0031090: organelle membrane	5.48E-03
25	GO:0016021: integral component of membrane	6.04E-03
26	GO:0005622: intracellular	7.24E-03
27	GO:0005665: DNA-directed RNA polymerase II, core complex	8.33E-03
28	GO:0031966: mitochondrial membrane	9.65E-03
29	GO:0010008: endosome membrane	1.27E-02
30	GO:0042651: thylakoid membrane	1.34E-02
31	GO:0005741: mitochondrial outer membrane	1.43E-02
32	GO:0005618: cell wall	1.51E-02
33	GO:0005829: cytosol	1.61E-02
34	GO:0015629: actin cytoskeleton	1.62E-02
35	GO:0005743: mitochondrial inner membrane	1.66E-02
36	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.72E-02
37	GO:0009941: chloroplast envelope	2.15E-02
38	GO:0031965: nuclear membrane	2.25E-02
39	GO:0000145: exocyst	2.47E-02
40	GO:0009705: plant-type vacuole membrane	2.56E-02
41	GO:0000932: P-body	3.07E-02
42	GO:0009535: chloroplast thylakoid membrane	3.58E-02
43	GO:0000151: ubiquitin ligase complex	3.71E-02
44	GO:0000786: nucleosome	4.25E-02
45	GO:0005819: spindle	4.67E-02