co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G02520

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1901799: negative regulation of proteasomal protein catabolic process	0.00E+00
2	GO:1900151: regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	0.00E+00
3	GO:0010477: response to sulfur dioxide	0.00E+00
4	GO:1901017: negative regulation of potassium ion transmembrane transporter activity	0.00E+00
5	GO:0046109: uridine biosynthetic process	0.00E+00
6	GO:0010360: negative regulation of anion channel activity	0.00E+00
7	GO:0000162: tryptophan biosynthetic process	3.44E-06
8	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	1.23E-05
9	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	3.18E-05
10	GO:0035266: meristem growth	6.91E-05
11	GO:0007292: female gamete generation	6.91E-05
12	GO:1902361: mitochondrial pyruvate transmembrane transport	6.91E-05
13	GO:0060211: regulation of nuclear-transcribed mRNA poly(A) tail shortening	6.91E-05
14	GO:0051775: response to redox state	6.91E-05
15	GO:0052544: defense response by callose deposition in cell wall	8.80E-05
16	GO:0015914: phospholipid transport	1.66E-04
17	GO:0019374: galactolipid metabolic process	1.66E-04
18	GO:0051788: response to misfolded protein	1.66E-04
19	GO:0052542: defense response by callose deposition	1.66E-04
20	GO:0006850: mitochondrial pyruvate transport	1.66E-04
21	GO:0015865: purine nucleotide transport	1.66E-04
22	GO:0046777: protein autophosphorylation	1.85E-04
23	GO:0030433: ubiquitin-dependent ERAD pathway	2.61E-04
24	GO:0051176: positive regulation of sulfur metabolic process	2.81E-04
25	GO:0060968: regulation of gene silencing	2.81E-04
26	GO:0000289: nuclear-transcribed mRNA poly(A) tail shortening	2.81E-04
27	GO:0046902: regulation of mitochondrial membrane permeability	4.06E-04
28	GO:0009052: pentose-phosphate shunt, non-oxidative branch	4.06E-04
29	GO:0006542: glutamine biosynthetic process	5.42E-04
30	GO:0048830: adventitious root development	5.42E-04
31	GO:0015994: chlorophyll metabolic process	5.42E-04
32	GO:0006564: L-serine biosynthetic process	6.87E-04
33	GO:0030308: negative regulation of cell growth	6.87E-04
34	GO:0042128: nitrate assimilation	7.69E-04
35	GO:0006014: D-ribose metabolic process	8.40E-04
36	GO:0009759: indole glucosinolate biosynthetic process	8.40E-04
37	GO:0048827: phyllome development	8.40E-04
38	GO:0048232: male gamete generation	8.40E-04
39	GO:0043248: proteasome assembly	8.40E-04
40	GO:0035435: phosphate ion transmembrane transport	8.40E-04
41	GO:0006796: phosphate-containing compound metabolic process	8.40E-04
42	GO:1900425: negative regulation of defense response to bacterium	8.40E-04
43	GO:0010337: regulation of salicylic acid metabolic process	8.40E-04
44	GO:0010311: lateral root formation	9.34E-04
45	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	1.17E-03
46	GO:0006955: immune response	1.17E-03
47	GO:0009395: phospholipid catabolic process	1.17E-03
48	GO:2000070: regulation of response to water deprivation	1.34E-03
49	GO:0045010: actin nucleation	1.34E-03
50	GO:0006102: isocitrate metabolic process	1.34E-03
51	GO:0006644: phospholipid metabolic process	1.34E-03
52	GO:0010078: maintenance of root meristem identity	1.34E-03
53	GO:0009932: cell tip growth	1.53E-03
54	GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	1.73E-03
55	GO:0090333: regulation of stomatal closure	1.73E-03
56	GO:0048829: root cap development	2.14E-03
57	GO:0009641: shade avoidance	2.14E-03
58	GO:0006995: cellular response to nitrogen starvation	2.14E-03
59	GO:0042742: defense response to bacterium	2.19E-03
60	GO:0030148: sphingolipid biosynthetic process	2.36E-03
61	GO:0009684: indoleacetic acid biosynthetic process	2.36E-03
62	GO:0010015: root morphogenesis	2.36E-03
63	GO:0009682: induced systemic resistance	2.36E-03
64	GO:0043085: positive regulation of catalytic activity	2.36E-03
65	GO:0071365: cellular response to auxin stimulus	2.58E-03
66	GO:0006790: sulfur compound metabolic process	2.58E-03
67	GO:0010105: negative regulation of ethylene-activated signaling pathway	2.58E-03
68	GO:0006094: gluconeogenesis	2.82E-03
69	GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process	2.82E-03
70	GO:0006446: regulation of translational initiation	3.06E-03
71	GO:0009933: meristem structural organization	3.06E-03
72	GO:0090351: seedling development	3.30E-03
73	GO:0009225: nucleotide-sugar metabolic process	3.30E-03
74	GO:0030150: protein import into mitochondrial matrix	3.81E-03
75	GO:0080147: root hair cell development	3.81E-03
76	GO:0046686: response to cadmium ion	4.30E-03
77	GO:0040008: regulation of growth	4.41E-03
78	GO:0016226: iron-sulfur cluster assembly	4.63E-03
79	GO:0006012: galactose metabolic process	4.91E-03
80	GO:0046323: glucose import	6.11E-03
81	GO:0010154: fruit development	6.11E-03
82	GO:0006511: ubiquitin-dependent protein catabolic process	6.31E-03
83	GO:0019252: starch biosynthetic process	6.74E-03
84	GO:0009851: auxin biosynthetic process	6.74E-03
85	GO:0002229: defense response to oomycetes	7.07E-03
86	GO:0009630: gravitropism	7.40E-03
87	GO:0016032: viral process	7.40E-03
88	GO:0006904: vesicle docking involved in exocytosis	8.42E-03
89	GO:0008219: cell death	1.10E-02
90	GO:0030244: cellulose biosynthetic process	1.10E-02
91	GO:0006499: N-terminal protein myristoylation	1.18E-02
92	GO:0016042: lipid catabolic process	1.27E-02
93	GO:0045087: innate immune response	1.30E-02
94	GO:0009408: response to heat	1.31E-02
95	GO:0006099: tricarboxylic acid cycle	1.34E-02
96	GO:0006839: mitochondrial transport	1.43E-02
97	GO:0006887: exocytosis	1.47E-02
98	GO:0042542: response to hydrogen peroxide	1.51E-02
99	GO:0010114: response to red light	1.56E-02
100	GO:0009744: response to sucrose	1.56E-02
101	GO:0051707: response to other organism	1.56E-02
102	GO:0000209: protein polyubiquitination	1.60E-02
103	GO:0009965: leaf morphogenesis	1.69E-02
104	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	1.78E-02
105	GO:0009735: response to cytokinin	2.13E-02
106	GO:0006096: glycolytic process	2.17E-02
107	GO:0048367: shoot system development	2.22E-02
108	GO:0048316: seed development	2.22E-02
109	GO:0009626: plant-type hypersensitive response	2.27E-02
110	GO:0042545: cell wall modification	2.42E-02
111	GO:0035556: intracellular signal transduction	2.46E-02
112	GO:0018105: peptidyl-serine phosphorylation	2.52E-02
113	GO:0009742: brassinosteroid mediated signaling pathway	2.58E-02
114	GO:0055114: oxidation-reduction process	2.80E-02
115	GO:0006413: translational initiation	3.47E-02
116	GO:0016036: cellular response to phosphate starvation	3.47E-02
117	GO:0045490: pectin catabolic process	3.65E-02
118	GO:0009451: RNA modification	3.71E-02
119	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	3.95E-02
120	GO:0007166: cell surface receptor signaling pathway	4.01E-02
121	GO:0009617: response to bacterium	4.14E-02
122	GO:0006468: protein phosphorylation	4.68E-02
123	GO:0006979: response to oxidative stress	4.73E-02
124	GO:0009651: response to salt stress	4.76E-02

Rank	GO Term	Adjusted P value
1	GO:0008482: sulfite oxidase activity	0.00E+00
2	GO:0005365: myo-inositol transmembrane transporter activity	0.00E+00
3	GO:0015576: sorbitol transmembrane transporter activity	0.00E+00
4	GO:0015370: solute:sodium symporter activity	0.00E+00
5	GO:0052642: lysophosphatidic acid phosphatase activity	0.00E+00
6	GO:0019211: phosphatase activator activity	0.00E+00
7	GO:0005522: profilin binding	0.00E+00
8	GO:0015575: mannitol transmembrane transporter activity	0.00E+00
9	GO:0015591: D-ribose transmembrane transporter activity	0.00E+00
10	GO:0015148: D-xylose transmembrane transporter activity	0.00E+00
11	GO:0005496: steroid binding	8.01E-06
12	GO:0036402: proteasome-activating ATPase activity	1.23E-05
13	GO:0004656: procollagen-proline 4-dioxygenase activity	1.76E-05
14	GO:0015168: glycerol transmembrane transporter activity	6.91E-05
15	GO:0004648: O-phospho-L-serine:2-oxoglutarate aminotransferase activity	6.91E-05
16	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	6.91E-05
17	GO:0004425: indole-3-glycerol-phosphate synthase activity	6.91E-05
18	GO:0033984: indole-3-glycerol-phosphate lyase activity	6.91E-05
19	GO:0017025: TBP-class protein binding	1.54E-04
20	GO:0045140: inositol phosphoceramide synthase activity	1.66E-04
21	GO:0015036: disulfide oxidoreductase activity	1.66E-04
22	GO:0004450: isocitrate dehydrogenase (NADP+) activity	1.66E-04
23	GO:0031418: L-ascorbic acid binding	1.94E-04
24	GO:0004751: ribose-5-phosphate isomerase activity	2.81E-04
25	GO:0016805: dipeptidase activity	2.81E-04
26	GO:0008430: selenium binding	2.81E-04
27	GO:0050833: pyruvate transmembrane transporter activity	2.81E-04
28	GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	4.06E-04
29	GO:0005354: galactose transmembrane transporter activity	4.06E-04
30	GO:0015204: urea transmembrane transporter activity	5.42E-04
31	GO:0004834: tryptophan synthase activity	5.42E-04
32	GO:0050378: UDP-glucuronate 4-epimerase activity	5.42E-04
33	GO:0004674: protein serine/threonine kinase activity	5.52E-04
34	GO:0005471: ATP:ADP antiporter activity	6.87E-04
35	GO:0004356: glutamate-ammonia ligase activity	6.87E-04
36	GO:0030151: molybdenum ion binding	6.87E-04
37	GO:0015145: monosaccharide transmembrane transporter activity	6.87E-04
38	GO:0005524: ATP binding	8.30E-04
39	GO:0004747: ribokinase activity	9.99E-04
40	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.12E-03
41	GO:0004620: phospholipase activity	1.17E-03
42	GO:0008235: metalloexopeptidase activity	1.17E-03
43	GO:0005507: copper ion binding	1.29E-03
44	GO:0004034: aldose 1-epimerase activity	1.34E-03
45	GO:0008865: fructokinase activity	1.34E-03
46	GO:0051287: NAD binding	1.71E-03
47	GO:0071949: FAD binding	1.73E-03
48	GO:0047617: acyl-CoA hydrolase activity	1.93E-03
49	GO:0045309: protein phosphorylated amino acid binding	1.93E-03
50	GO:0008047: enzyme activator activity	2.14E-03
51	GO:0045735: nutrient reservoir activity	2.24E-03
52	GO:0004177: aminopeptidase activity	2.36E-03
53	GO:0019904: protein domain specific binding	2.36E-03
54	GO:0016301: kinase activity	2.76E-03
55	GO:0005315: inorganic phosphate transmembrane transporter activity	2.82E-03
56	GO:0000175: 3'-5'-exoribonuclease activity	2.82E-03
57	GO:0015266: protein channel activity	2.82E-03
58	GO:0031624: ubiquitin conjugating enzyme binding	3.06E-03
59	GO:0004535: poly(A)-specific ribonuclease activity	3.06E-03
60	GO:0016887: ATPase activity	3.61E-03
61	GO:0008408: 3'-5' exonuclease activity	4.35E-03
62	GO:0004540: ribonuclease activity	4.35E-03
63	GO:0001085: RNA polymerase II transcription factor binding	6.11E-03
64	GO:0016853: isomerase activity	6.42E-03
65	GO:0005355: glucose transmembrane transporter activity	6.42E-03
66	GO:0050662: coenzyme binding	6.42E-03
67	GO:0051015: actin filament binding	7.73E-03
68	GO:0009931: calcium-dependent protein serine/threonine kinase activity	9.87E-03
69	GO:0004683: calmodulin-dependent protein kinase activity	1.02E-02
70	GO:0005506: iron ion binding	1.03E-02
71	GO:0008236: serine-type peptidase activity	1.06E-02
72	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.10E-02
73	GO:0030145: manganese ion binding	1.22E-02
74	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	1.22E-02
75	GO:0003746: translation elongation factor activity	1.30E-02
76	GO:0003993: acid phosphatase activity	1.34E-02
77	GO:0050661: NADP binding	1.43E-02
78	GO:0004364: glutathione transferase activity	1.51E-02
79	GO:0015293: symporter activity	1.69E-02
80	GO:0020037: heme binding	1.87E-02
81	GO:0045330: aspartyl esterase activity	2.07E-02
82	GO:0030599: pectinesterase activity	2.37E-02
83	GO:0003779: actin binding	2.42E-02
84	GO:0015035: protein disulfide oxidoreductase activity	2.52E-02
85	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.96E-02
86	GO:0030246: carbohydrate binding	3.13E-02
87	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	3.18E-02
88	GO:0015144: carbohydrate transmembrane transporter activity	3.30E-02
89	GO:0008565: protein transporter activity	3.30E-02
90	GO:0046910: pectinesterase inhibitor activity	3.47E-02
91	GO:0005351: sugar:proton symporter activity	3.59E-02
92	GO:0003743: translation initiation factor activity	4.07E-02
93	GO:0000287: magnesium ion binding	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	8.63E-07
2	GO:0031597: cytosolic proteasome complex	1.76E-05
3	GO:0031595: nuclear proteasome complex	2.41E-05
4	GO:0031305: integral component of mitochondrial inner membrane	3.18E-05
5	GO:0008540: proteasome regulatory particle, base subcomplex	6.19E-05
6	GO:0032783: ELL-EAF complex	6.91E-05
7	GO:0005911: cell-cell junction	6.91E-05
8	GO:0030014: CCR4-NOT complex	6.91E-05
9	GO:0031314: extrinsic component of mitochondrial inner membrane	1.66E-04
10	GO:0000502: proteasome complex	1.74E-04
11	GO:0070062: extracellular exosome	4.06E-04
12	GO:0016020: membrane	4.51E-04
13	GO:0031902: late endosome membrane	1.32E-03
14	GO:0005829: cytosol	1.60E-03
15	GO:0016604: nuclear body	1.93E-03
16	GO:0005740: mitochondrial envelope	2.14E-03
17	GO:0090404: pollen tube tip	2.36E-03
18	GO:0005783: endoplasmic reticulum	4.03E-03
19	GO:0005789: endoplasmic reticulum membrane	4.17E-03
20	GO:0005777: peroxisome	5.10E-03
21	GO:0005744: mitochondrial inner membrane presequence translocase complex	5.20E-03
22	GO:0000145: exocyst	7.40E-03
23	GO:0071944: cell periphery	7.73E-03
24	GO:0005802: trans-Golgi network	7.79E-03
25	GO:0032580: Golgi cisterna membrane	8.08E-03
26	GO:0005794: Golgi apparatus	9.15E-03
27	GO:0005667: transcription factor complex	9.87E-03
28	GO:0000151: ubiquitin ligase complex	1.10E-02
29	GO:0009570: chloroplast stroma	1.18E-02
30	GO:0005743: mitochondrial inner membrane	1.22E-02
31	GO:0000139: Golgi membrane	1.54E-02
32	GO:0010008: endosome membrane	2.22E-02
33	GO:0016021: integral component of membrane	2.50E-02
34	GO:0009543: chloroplast thylakoid lumen	2.90E-02
35	GO:0009506: plasmodesma	3.86E-02
36	GO:0005768: endosome	4.23E-02
37	GO:0022627: cytosolic small ribosomal subunit	4.45E-02
38	GO:0005774: vacuolar membrane	4.95E-02