Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G02180

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006399: tRNA metabolic process0.00E+00
2GO:0006437: tyrosyl-tRNA aminoacylation0.00E+00
3GO:0006429: leucyl-tRNA aminoacylation0.00E+00
4GO:0045176: apical protein localization0.00E+00
5GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
6GO:0033494: ferulate metabolic process0.00E+00
7GO:0061635: regulation of protein complex stability0.00E+00
8GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
9GO:0042821: pyridoxal biosynthetic process0.00E+00
10GO:0007638: mechanosensory behavior0.00E+00
11GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
12GO:0042820: vitamin B6 catabolic process0.00E+00
13GO:0015979: photosynthesis1.41E-11
14GO:0009773: photosynthetic electron transport in photosystem I5.76E-10
15GO:0032544: plastid translation5.63E-09
16GO:0042254: ribosome biogenesis8.83E-08
17GO:0009735: response to cytokinin1.80E-07
18GO:0006412: translation2.49E-06
19GO:0010207: photosystem II assembly6.60E-06
20GO:0030388: fructose 1,6-bisphosphate metabolic process8.79E-06
21GO:0006000: fructose metabolic process3.02E-05
22GO:0006518: peptide metabolic process3.02E-05
23GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly6.54E-05
24GO:0009658: chloroplast organization7.29E-05
25GO:0010037: response to carbon dioxide1.14E-04
26GO:0015976: carbon utilization1.14E-04
27GO:2000122: negative regulation of stomatal complex development1.14E-04
28GO:0006546: glycine catabolic process1.14E-04
29GO:0032543: mitochondrial translation1.76E-04
30GO:0006810: transport2.10E-04
31GO:0042549: photosystem II stabilization2.51E-04
32GO:0010190: cytochrome b6f complex assembly2.51E-04
33GO:0006418: tRNA aminoacylation for protein translation2.87E-04
34GO:0010196: nonphotochemical quenching4.34E-04
35GO:0033481: galacturonate biosynthetic process4.45E-04
36GO:0071588: hydrogen peroxide mediated signaling pathway4.45E-04
37GO:0016031: tRNA import into mitochondrion4.45E-04
38GO:0009443: pyridoxal 5'-phosphate salvage4.45E-04
39GO:1904966: positive regulation of vitamin E biosynthetic process4.45E-04
40GO:1904964: positive regulation of phytol biosynthetic process4.45E-04
41GO:0016117: carotenoid biosynthetic process5.14E-04
42GO:0000413: protein peptidyl-prolyl isomerization5.68E-04
43GO:0006002: fructose 6-phosphate metabolic process6.60E-04
44GO:0009657: plastid organization6.60E-04
45GO:0045454: cell redox homeostasis8.83E-04
46GO:0043039: tRNA aminoacylation9.61E-04
47GO:1902326: positive regulation of chlorophyll biosynthetic process9.61E-04
48GO:0006869: lipid transport1.06E-03
49GO:0043085: positive regulation of catalytic activity1.25E-03
50GO:0006415: translational termination1.25E-03
51GO:0018119: peptidyl-cysteine S-nitrosylation1.25E-03
52GO:0090506: axillary shoot meristem initiation1.57E-03
53GO:0010581: regulation of starch biosynthetic process1.57E-03
54GO:0071492: cellular response to UV-A1.57E-03
55GO:0006696: ergosterol biosynthetic process1.57E-03
56GO:0006094: gluconeogenesis1.62E-03
57GO:0009767: photosynthetic electron transport chain1.62E-03
58GO:0005986: sucrose biosynthetic process1.62E-03
59GO:0018298: protein-chromophore linkage1.82E-03
60GO:0010020: chloroplast fission1.83E-03
61GO:0019253: reductive pentose-phosphate cycle1.83E-03
62GO:0042742: defense response to bacterium2.00E-03
63GO:2001141: regulation of RNA biosynthetic process2.27E-03
64GO:0007231: osmosensory signaling pathway2.27E-03
65GO:0006424: glutamyl-tRNA aminoacylation2.27E-03
66GO:0043572: plastid fission2.27E-03
67GO:0009768: photosynthesis, light harvesting in photosystem I2.80E-03
68GO:0071486: cellular response to high light intensity3.05E-03
69GO:0019464: glycine decarboxylation via glycine cleavage system3.05E-03
70GO:0009765: photosynthesis, light harvesting3.05E-03
71GO:0045727: positive regulation of translation3.05E-03
72GO:0015994: chlorophyll metabolic process3.05E-03
73GO:0033500: carbohydrate homeostasis3.05E-03
74GO:0061077: chaperone-mediated protein folding3.08E-03
75GO:0031365: N-terminal protein amino acid modification3.90E-03
76GO:0006461: protein complex assembly3.90E-03
77GO:0016123: xanthophyll biosynthetic process3.90E-03
78GO:0016120: carotene biosynthetic process3.90E-03
79GO:0006564: L-serine biosynthetic process3.90E-03
80GO:0006656: phosphatidylcholine biosynthetic process3.90E-03
81GO:0019722: calcium-mediated signaling4.00E-03
82GO:0009409: response to cold4.13E-03
83GO:0042335: cuticle development4.69E-03
84GO:0010405: arabinogalactan protein metabolic process4.83E-03
85GO:0048827: phyllome development4.83E-03
86GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway4.83E-03
87GO:0016554: cytidine to uridine editing4.83E-03
88GO:0033365: protein localization to organelle4.83E-03
89GO:0018258: protein O-linked glycosylation via hydroxyproline4.83E-03
90GO:0009854: oxidative photosynthetic carbon pathway5.83E-03
91GO:0010019: chloroplast-nucleus signaling pathway5.83E-03
92GO:0010555: response to mannitol5.83E-03
93GO:0009955: adaxial/abaxial pattern specification5.83E-03
94GO:0042372: phylloquinone biosynthetic process5.83E-03
95GO:0010067: procambium histogenesis5.83E-03
96GO:1901259: chloroplast rRNA processing5.83E-03
97GO:0009645: response to low light intensity stimulus6.89E-03
98GO:0050829: defense response to Gram-negative bacterium6.89E-03
99GO:0006400: tRNA modification6.89E-03
100GO:0030091: protein repair8.02E-03
101GO:0009819: drought recovery8.02E-03
102GO:0009642: response to light intensity8.02E-03
103GO:0007267: cell-cell signaling8.07E-03
104GO:0010027: thylakoid membrane organization9.07E-03
105GO:0017004: cytochrome complex assembly9.21E-03
106GO:0071482: cellular response to light stimulus9.21E-03
107GO:0019430: removal of superoxide radicals9.21E-03
108GO:0090305: nucleic acid phosphodiester bond hydrolysis1.05E-02
109GO:0010206: photosystem II repair1.05E-02
110GO:0000373: Group II intron splicing1.05E-02
111GO:0015995: chlorophyll biosynthetic process1.07E-02
112GO:0010411: xyloglucan metabolic process1.07E-02
113GO:1900865: chloroplast RNA modification1.18E-02
114GO:0010380: regulation of chlorophyll biosynthetic process1.18E-02
115GO:0009817: defense response to fungus, incompatible interaction1.19E-02
116GO:0000160: phosphorelay signal transduction system1.25E-02
117GO:0043069: negative regulation of programmed cell death1.31E-02
118GO:0010119: regulation of stomatal movement1.38E-02
119GO:0006816: calcium ion transport1.46E-02
120GO:0009073: aromatic amino acid family biosynthetic process1.46E-02
121GO:0006352: DNA-templated transcription, initiation1.46E-02
122GO:0009750: response to fructose1.46E-02
123GO:0009637: response to blue light1.51E-02
124GO:0055114: oxidation-reduction process1.53E-02
125GO:0045490: pectin catabolic process1.57E-02
126GO:0034599: cellular response to oxidative stress1.58E-02
127GO:0006790: sulfur compound metabolic process1.60E-02
128GO:0005983: starch catabolic process1.60E-02
129GO:0071555: cell wall organization1.65E-02
130GO:0010229: inflorescence development1.75E-02
131GO:0010540: basipetal auxin transport1.91E-02
132GO:0010143: cutin biosynthetic process1.91E-02
133GO:0010223: secondary shoot formation1.91E-02
134GO:0010114: response to red light1.95E-02
135GO:0042546: cell wall biogenesis2.03E-02
136GO:0046854: phosphatidylinositol phosphorylation2.07E-02
137GO:0009225: nucleotide-sugar metabolic process2.07E-02
138GO:0005985: sucrose metabolic process2.07E-02
139GO:0070588: calcium ion transmembrane transport2.07E-02
140GO:0006457: protein folding2.08E-02
141GO:0009644: response to high light intensity2.11E-02
142GO:0019762: glucosinolate catabolic process2.24E-02
143GO:0006636: unsaturated fatty acid biosynthetic process2.24E-02
144GO:0019344: cysteine biosynthetic process2.41E-02
145GO:0000027: ribosomal large subunit assembly2.41E-02
146GO:0007010: cytoskeleton organization2.41E-02
147GO:0007017: microtubule-based process2.59E-02
148GO:0009736: cytokinin-activated signaling pathway2.63E-02
149GO:0006813: potassium ion transport2.63E-02
150GO:0006508: proteolysis2.71E-02
151GO:0016998: cell wall macromolecule catabolic process2.77E-02
152GO:0007005: mitochondrion organization2.95E-02
153GO:0080092: regulation of pollen tube growth2.95E-02
154GO:0030245: cellulose catabolic process2.95E-02
155GO:0016226: iron-sulfur cluster assembly2.95E-02
156GO:0001944: vasculature development3.14E-02
157GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.14E-02
158GO:0009294: DNA mediated transformation3.14E-02
159GO:0010089: xylem development3.33E-02
160GO:0009793: embryo development ending in seed dormancy3.40E-02
161GO:0042545: cell wall modification3.63E-02
162GO:0010087: phloem or xylem histogenesis3.73E-02
163GO:0006662: glycerol ether metabolic process3.94E-02
164GO:0048544: recognition of pollen4.14E-02
165GO:0048825: cotyledon development4.36E-02
166GO:0000302: response to reactive oxygen species4.57E-02
167GO:0007264: small GTPase mediated signal transduction4.79E-02
RankGO TermAdjusted P value
1GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
2GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
3GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
4GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
5GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
6GO:0052667: phosphomethylethanolamine N-methyltransferase activity0.00E+00
7GO:0008887: glycerate kinase activity0.00E+00
8GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
9GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
10GO:0045435: lycopene epsilon cyclase activity0.00E+00
11GO:0004822: isoleucine-tRNA ligase activity0.00E+00
12GO:0004823: leucine-tRNA ligase activity0.00E+00
13GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
14GO:0046905: phytoene synthase activity0.00E+00
15GO:0019843: rRNA binding6.29E-15
16GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.27E-09
17GO:0003735: structural constituent of ribosome1.18E-08
18GO:0051920: peroxiredoxin activity9.04E-08
19GO:0016209: antioxidant activity3.19E-07
20GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity8.79E-06
21GO:0005528: FK506 binding1.37E-05
22GO:0002161: aminoacyl-tRNA editing activity3.02E-05
23GO:0016149: translation release factor activity, codon specific6.54E-05
24GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.14E-04
25GO:0016168: chlorophyll binding1.84E-04
26GO:0004222: metalloendopeptidase activity3.08E-04
27GO:0004723: calcium-dependent protein serine/threonine phosphatase activity3.37E-04
28GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity4.45E-04
29GO:0047259: glucomannan 4-beta-mannosyltransferase activity4.45E-04
30GO:0004560: alpha-L-fucosidase activity4.45E-04
31GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity4.45E-04
32GO:0009496: plastoquinol--plastocyanin reductase activity4.45E-04
33GO:0080132: fatty acid alpha-hydroxylase activity4.45E-04
34GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity4.45E-04
35GO:0004831: tyrosine-tRNA ligase activity4.45E-04
36GO:0051996: squalene synthase activity4.45E-04
37GO:0004812: aminoacyl-tRNA ligase activity5.14E-04
38GO:0004033: aldo-keto reductase (NADP) activity5.41E-04
39GO:0003747: translation release factor activity7.90E-04
40GO:0047746: chlorophyllase activity9.61E-04
41GO:0042389: omega-3 fatty acid desaturase activity9.61E-04
42GO:0004618: phosphoglycerate kinase activity9.61E-04
43GO:0004617: phosphoglycerate dehydrogenase activity9.61E-04
44GO:0004047: aminomethyltransferase activity9.61E-04
45GO:0016630: protochlorophyllide reductase activity9.61E-04
46GO:0004310: farnesyl-diphosphate farnesyltransferase activity9.61E-04
47GO:0000234: phosphoethanolamine N-methyltransferase activity9.61E-04
48GO:0008967: phosphoglycolate phosphatase activity9.61E-04
49GO:0008047: enzyme activator activity1.08E-03
50GO:0070402: NADPH binding1.57E-03
51GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity1.57E-03
52GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity1.57E-03
53GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity1.57E-03
54GO:0050734: hydroxycinnamoyltransferase activity1.57E-03
55GO:0004089: carbonate dehydratase activity1.62E-03
56GO:0031072: heat shock protein binding1.62E-03
57GO:0004601: peroxidase activity1.69E-03
58GO:0008097: 5S rRNA binding2.27E-03
59GO:0004375: glycine dehydrogenase (decarboxylating) activity2.27E-03
60GO:0031409: pigment binding2.29E-03
61GO:0004659: prenyltransferase activity3.05E-03
62GO:0001053: plastid sigma factor activity3.05E-03
63GO:0005319: lipid transporter activity3.05E-03
64GO:0016987: sigma factor activity3.05E-03
65GO:1990137: plant seed peroxidase activity3.05E-03
66GO:0050378: UDP-glucuronate 4-epimerase activity3.05E-03
67GO:0043495: protein anchor3.05E-03
68GO:0022891: substrate-specific transmembrane transporter activity3.68E-03
69GO:0051537: 2 iron, 2 sulfur cluster binding3.77E-03
70GO:0003959: NADPH dehydrogenase activity3.90E-03
71GO:0016773: phosphotransferase activity, alcohol group as acceptor3.90E-03
72GO:0008200: ion channel inhibitor activity4.83E-03
73GO:1990714: hydroxyproline O-galactosyltransferase activity4.83E-03
74GO:0004130: cytochrome-c peroxidase activity4.83E-03
75GO:0016208: AMP binding4.83E-03
76GO:0016688: L-ascorbate peroxidase activity4.83E-03
77GO:0005509: calcium ion binding4.91E-03
78GO:0004791: thioredoxin-disulfide reductase activity5.44E-03
79GO:0046872: metal ion binding5.60E-03
80GO:0033743: peptide-methionine (R)-S-oxide reductase activity5.83E-03
81GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity5.83E-03
82GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity5.83E-03
83GO:0051753: mannan synthase activity5.83E-03
84GO:0016762: xyloglucan:xyloglucosyl transferase activity6.25E-03
85GO:0048038: quinone binding6.25E-03
86GO:0008235: metalloexopeptidase activity6.89E-03
87GO:0019899: enzyme binding6.89E-03
88GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor7.13E-03
89GO:0000156: phosphorelay response regulator activity7.13E-03
90GO:0030599: pectinesterase activity7.25E-03
91GO:0052747: sinapyl alcohol dehydrogenase activity8.02E-03
92GO:0008237: metallopeptidase activity8.07E-03
93GO:0008289: lipid binding8.76E-03
94GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water9.21E-03
95GO:0016798: hydrolase activity, acting on glycosyl bonds1.07E-02
96GO:0047617: acyl-CoA hydrolase activity1.18E-02
97GO:0030234: enzyme regulator activity1.31E-02
98GO:0004871: signal transducer activity1.36E-02
99GO:0004177: aminopeptidase activity1.46E-02
100GO:0005089: Rho guanyl-nucleotide exchange factor activity1.46E-02
101GO:0045551: cinnamyl-alcohol dehydrogenase activity1.60E-02
102GO:0000049: tRNA binding1.60E-02
103GO:0005262: calcium channel activity1.75E-02
104GO:0004565: beta-galactosidase activity1.75E-02
105GO:0015266: protein channel activity1.75E-02
106GO:0008266: poly(U) RNA binding1.91E-02
107GO:0009055: electron carrier activity1.94E-02
108GO:0042802: identical protein binding2.13E-02
109GO:0051536: iron-sulfur cluster binding2.41E-02
110GO:0004857: enzyme inhibitor activity2.41E-02
111GO:0043424: protein histidine kinase binding2.59E-02
112GO:0015079: potassium ion transmembrane transporter activity2.59E-02
113GO:0008324: cation transmembrane transporter activity2.59E-02
114GO:0004176: ATP-dependent peptidase activity2.77E-02
115GO:0033612: receptor serine/threonine kinase binding2.77E-02
116GO:0016788: hydrolase activity, acting on ester bonds2.80E-02
117GO:0045330: aspartyl esterase activity2.91E-02
118GO:0030570: pectate lyase activity3.14E-02
119GO:0008810: cellulase activity3.14E-02
120GO:0003756: protein disulfide isomerase activity3.33E-02
121GO:0047134: protein-disulfide reductase activity3.53E-02
122GO:0005102: receptor binding3.53E-02
123GO:0051082: unfolded protein binding3.74E-02
124GO:0052689: carboxylic ester hydrolase activity4.04E-02
125GO:0050662: coenzyme binding4.14E-02
126GO:0004518: nuclease activity4.79E-02
RankGO TermAdjusted P value
1GO:0009571: proplastid stroma0.00E+00
2GO:0009575: chromoplast stroma0.00E+00
3GO:0044391: ribosomal subunit0.00E+00
4GO:0009507: chloroplast1.02E-69
5GO:0009941: chloroplast envelope2.32E-37
6GO:0009535: chloroplast thylakoid membrane3.96E-37
7GO:0009570: chloroplast stroma4.95E-34
8GO:0009534: chloroplast thylakoid2.51E-22
9GO:0009579: thylakoid1.23E-18
10GO:0009543: chloroplast thylakoid lumen6.60E-18
11GO:0048046: apoplast3.15E-12
12GO:0031977: thylakoid lumen1.36E-11
13GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)8.96E-11
14GO:0005840: ribosome7.24E-10
15GO:0030095: chloroplast photosystem II6.60E-06
16GO:0010319: stromule9.38E-06
17GO:0009654: photosystem II oxygen evolving complex1.69E-05
18GO:0046658: anchored component of plasma membrane4.69E-05
19GO:0009523: photosystem II7.46E-05
20GO:0019898: extrinsic component of membrane7.46E-05
21GO:0031969: chloroplast membrane1.31E-04
22GO:0005618: cell wall2.85E-04
23GO:0042651: thylakoid membrane2.87E-04
24GO:0010287: plastoglobule4.00E-04
25GO:0009505: plant-type cell wall4.09E-04
26GO:0009533: chloroplast stromal thylakoid4.34E-04
27GO:0009344: nitrite reductase complex [NAD(P)H]4.45E-04
28GO:0009782: photosystem I antenna complex4.45E-04
29GO:0043190: ATP-binding cassette (ABC) transporter complex4.45E-04
30GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex4.45E-04
31GO:0042170: plastid membrane9.61E-04
32GO:0031225: anchored component of membrane1.07E-03
33GO:0000311: plastid large ribosomal subunit1.43E-03
34GO:0009706: chloroplast inner membrane1.55E-03
35GO:0030076: light-harvesting complex2.05E-03
36GO:0015934: large ribosomal subunit2.19E-03
37GO:0005960: glycine cleavage complex2.27E-03
38GO:0009512: cytochrome b6f complex3.90E-03
39GO:0005778: peroxisomal membrane8.07E-03
40GO:0009536: plastid9.07E-03
41GO:0005874: microtubule9.18E-03
42GO:0005811: lipid particle9.21E-03
43GO:0005763: mitochondrial small ribosomal subunit1.05E-02
44GO:0045298: tubulin complex1.05E-02
45GO:0016324: apical plasma membrane1.31E-02
46GO:0016020: membrane1.63E-02
47GO:0009508: plastid chromosome1.75E-02
48GO:0000312: plastid small ribosomal subunit1.91E-02
49GO:0005875: microtubule associated complex2.24E-02
50GO:0015935: small ribosomal subunit2.77E-02
51GO:0009532: plastid stroma2.77E-02
52GO:0005744: mitochondrial inner membrane presequence translocase complex3.33E-02
53GO:0005770: late endosome3.94E-02
54GO:0009522: photosystem I4.14E-02
Gene type



Gene DE type