co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G02140

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006792: regulation of sulfur utilization	0.00E+00
2	GO:0010411: xyloglucan metabolic process	1.65E-06
3	GO:0050691: regulation of defense response to virus by host	7.75E-05
4	GO:0055063: sulfate ion homeostasis	7.75E-05
5	GO:0046500: S-adenosylmethionine metabolic process	7.75E-05
6	GO:1901537: positive regulation of DNA demethylation	7.75E-05
7	GO:0009962: regulation of flavonoid biosynthetic process	7.75E-05
8	GO:2000029: regulation of proanthocyanidin biosynthetic process	7.75E-05
9	GO:0009826: unidimensional cell growth	1.38E-04
10	GO:0009718: anthocyanin-containing compound biosynthetic process	1.40E-04
11	GO:0042546: cell wall biogenesis	1.49E-04
12	GO:0031542: positive regulation of anthocyanin biosynthetic process	1.85E-04
13	GO:0071497: cellular response to freezing	1.85E-04
14	GO:0000271: polysaccharide biosynthetic process	4.24E-04
15	GO:0009741: response to brassinosteroid	4.57E-04
16	GO:0009828: plant-type cell wall loosening	6.75E-04
17	GO:0016131: brassinosteroid metabolic process	7.57E-04
18	GO:0010438: cellular response to sulfur starvation	7.57E-04
19	GO:0006544: glycine metabolic process	7.57E-04
20	GO:0060918: auxin transport	9.24E-04
21	GO:0006563: L-serine metabolic process	9.24E-04
22	GO:0009813: flavonoid biosynthetic process	1.08E-03
23	GO:0051510: regulation of unidimensional cell growth	1.29E-03
24	GO:0010439: regulation of glucosinolate biosynthetic process	1.48E-03
25	GO:0070413: trehalose metabolism in response to stress	1.48E-03
26	GO:0010200: response to chitin	1.61E-03
27	GO:0046777: protein autophosphorylation	1.67E-03
28	GO:0044030: regulation of DNA methylation	1.69E-03
29	GO:0035999: tetrahydrofolate interconversion	2.14E-03
30	GO:0043069: negative regulation of programmed cell death	2.37E-03
31	GO:0009751: response to salicylic acid	2.47E-03
32	GO:0000038: very long-chain fatty acid metabolic process	2.61E-03
33	GO:0018107: peptidyl-threonine phosphorylation	3.12E-03
34	GO:0030154: cell differentiation	3.15E-03
35	GO:0010540: basipetal auxin transport	3.38E-03
36	GO:0034605: cellular response to heat	3.38E-03
37	GO:0002237: response to molecule of bacterial origin	3.38E-03
38	GO:0009873: ethylene-activated signaling pathway	3.47E-03
39	GO:0009969: xyloglucan biosynthetic process	3.66E-03
40	GO:0005992: trehalose biosynthetic process	4.23E-03
41	GO:0006487: protein N-linked glycosylation	4.23E-03
42	GO:0019953: sexual reproduction	4.52E-03
43	GO:0010026: trichome differentiation	4.52E-03
44	GO:0016998: cell wall macromolecule catabolic process	4.82E-03
45	GO:0040008: regulation of growth	5.13E-03
46	GO:0009411: response to UV	5.45E-03
47	GO:0040007: growth	5.45E-03
48	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	5.45E-03
49	GO:0010214: seed coat development	5.77E-03
50	GO:0019722: calcium-mediated signaling	5.77E-03
51	GO:0045489: pectin biosynthetic process	6.78E-03
52	GO:0009791: post-embryonic development	7.49E-03
53	GO:0002229: defense response to oomycetes	7.85E-03
54	GO:0006355: regulation of transcription, DNA-templated	7.91E-03
55	GO:0010583: response to cyclopentenone	8.22E-03
56	GO:0007267: cell-cell signaling	9.36E-03
57	GO:0001666: response to hypoxia	1.02E-02
58	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.06E-02
59	GO:0044550: secondary metabolite biosynthetic process	1.12E-02
60	GO:0045454: cell redox homeostasis	1.23E-02
61	GO:0071555: cell wall organization	1.27E-02
62	GO:0048767: root hair elongation	1.27E-02
63	GO:0006351: transcription, DNA-templated	1.27E-02
64	GO:0048527: lateral root development	1.36E-02
65	GO:0009867: jasmonic acid mediated signaling pathway	1.45E-02
66	GO:0016051: carbohydrate biosynthetic process	1.45E-02
67	GO:0009637: response to blue light	1.45E-02
68	GO:0031347: regulation of defense response	1.98E-02
69	GO:0006357: regulation of transcription from RNA polymerase II promoter	2.02E-02
70	GO:0009664: plant-type cell wall organization	2.04E-02
71	GO:0006468: protein phosphorylation	2.04E-02
72	GO:0006486: protein glycosylation	2.14E-02
73	GO:0048316: seed development	2.47E-02
74	GO:0009738: abscisic acid-activated signaling pathway	2.62E-02
75	GO:0018105: peptidyl-serine phosphorylation	2.81E-02
76	GO:0035556: intracellular signal transduction	2.86E-02
77	GO:0009742: brassinosteroid mediated signaling pathway	2.87E-02
78	GO:0045893: positive regulation of transcription, DNA-templated	3.11E-02
79	GO:0009845: seed germination	3.42E-02
80	GO:0042744: hydrogen peroxide catabolic process	3.54E-02
81	GO:0006633: fatty acid biosynthetic process	3.80E-02
82	GO:0055114: oxidation-reduction process	3.83E-02
83	GO:0007623: circadian rhythm	4.06E-02

Rank	GO Term	Adjusted P value
1	GO:0090411: brassinosteroid binding	0.00E+00
2	GO:0047890: flavanone 4-reductase activity	0.00E+00
3	GO:0016711: flavonoid 3'-monooxygenase activity	0.00E+00
4	GO:0045552: dihydrokaempferol 4-reductase activity	0.00E+00
5	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.51E-05
6	GO:0016798: hydrolase activity, acting on glycosyl bonds	5.85E-05
7	GO:0080132: fatty acid alpha-hydroxylase activity	7.75E-05
8	GO:0050736: O-malonyltransferase activity	1.85E-04
9	GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity	4.49E-04
10	GO:0033843: xyloglucan 6-xylosyltransferase activity	4.49E-04
11	GO:0004372: glycine hydroxymethyltransferase activity	7.57E-04
12	GO:0004674: protein serine/threonine kinase activity	7.80E-04
13	GO:0035252: UDP-xylosyltransferase activity	9.24E-04
14	GO:0010427: abscisic acid binding	9.24E-04
15	GO:0019899: enzyme binding	1.29E-03
16	GO:0003700: transcription factor activity, sequence-specific DNA binding	2.09E-03
17	GO:0004805: trehalose-phosphatase activity	2.37E-03
18	GO:0004864: protein phosphatase inhibitor activity	2.37E-03
19	GO:0008327: methyl-CpG binding	2.61E-03
20	GO:0005506: iron ion binding	2.70E-03
21	GO:0000976: transcription regulatory region sequence-specific DNA binding	2.86E-03
22	GO:0016758: transferase activity, transferring hexosyl groups	3.80E-03
23	GO:0016757: transferase activity, transferring glycosyl groups	4.93E-03
24	GO:0004672: protein kinase activity	4.95E-03
25	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	5.13E-03
26	GO:0020037: heme binding	5.52E-03
27	GO:0016740: transferase activity	6.68E-03
28	GO:0001085: RNA polymerase II transcription factor binding	6.78E-03
29	GO:0050662: coenzyme binding	7.13E-03
30	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	7.39E-03
31	GO:0004872: receptor activity	7.49E-03
32	GO:0003677: DNA binding	7.89E-03
33	GO:0019825: oxygen binding	8.13E-03
34	GO:0003682: chromatin binding	8.78E-03
35	GO:0016791: phosphatase activity	8.97E-03
36	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	9.36E-03
37	GO:0043565: sequence-specific DNA binding	1.00E-02
38	GO:0008375: acetylglucosaminyltransferase activity	1.10E-02
39	GO:0016301: kinase activity	1.11E-02
40	GO:0004806: triglyceride lipase activity	1.14E-02
41	GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting	1.23E-02
42	GO:0044212: transcription regulatory region DNA binding	1.27E-02
43	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	1.36E-02
44	GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding	1.38E-02
45	GO:0046983: protein dimerization activity	1.83E-02
46	GO:0031625: ubiquitin protein ligase binding	2.30E-02
47	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	2.47E-02
48	GO:0015035: protein disulfide oxidoreductase activity	2.81E-02
49	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.29E-02
50	GO:0030170: pyridoxal phosphate binding	3.48E-02
51	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	3.54E-02
52	GO:0030246: carbohydrate binding	3.64E-02
53	GO:0042802: identical protein binding	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0090568: nuclear transcriptional repressor complex	0.00E+00
2	GO:0042406: extrinsic component of endoplasmic reticulum membrane	3.11E-04
3	GO:0010369: chromocenter	1.10E-03
4	GO:0048046: apoplast	1.51E-03
5	GO:0005794: Golgi apparatus	4.67E-03
6	GO:0005615: extracellular space	6.00E-03
7	GO:0005618: cell wall	6.44E-03
8	GO:0005667: transcription factor complex	1.10E-02
9	GO:0009505: plant-type cell wall	1.69E-02
10	GO:0005576: extracellular region	3.96E-02
11	GO:0031225: anchored component of membrane	4.21E-02
12	GO:0016021: integral component of membrane	4.49E-02
13	GO:0009506: plasmodesma	4.95E-02