co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G01810

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0061635: regulation of protein complex stability	0.00E+00
2	GO:0016553: base conversion or substitution editing	0.00E+00
3	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
4	GO:1905499: trichome papilla formation	0.00E+00
5	GO:0006399: tRNA metabolic process	0.00E+00
6	GO:0002184: cytoplasmic translational termination	0.00E+00
7	GO:0090470: shoot organ boundary specification	0.00E+00
8	GO:0042335: cuticle development	8.14E-08
9	GO:0090391: granum assembly	6.40E-06
10	GO:0009773: photosynthetic electron transport in photosystem I	1.23E-05
11	GO:0010196: nonphotochemical quenching	1.20E-04
12	GO:0048564: photosystem I assembly	1.53E-04
13	GO:0043489: RNA stabilization	1.91E-04
14	GO:0032544: plastid translation	1.91E-04
15	GO:0033481: galacturonate biosynthetic process	1.91E-04
16	GO:0005991: trehalose metabolic process	1.91E-04
17	GO:0071588: hydrogen peroxide mediated signaling pathway	1.91E-04
18	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	1.91E-04
19	GO:0010027: thylakoid membrane organization	2.70E-04
20	GO:0009735: response to cytokinin	2.83E-04
21	GO:0015995: chlorophyll biosynthetic process	3.36E-04
22	GO:0015979: photosynthesis	3.44E-04
23	GO:0010115: regulation of abscisic acid biosynthetic process	4.29E-04
24	GO:0001736: establishment of planar polarity	4.29E-04
25	GO:0006518: peptide metabolic process	6.99E-04
26	GO:0015714: phosphoenolpyruvate transport	6.99E-04
27	GO:0009768: photosynthesis, light harvesting in photosystem I	8.41E-04
28	GO:0031048: chromatin silencing by small RNA	9.97E-04
29	GO:1901332: negative regulation of lateral root development	9.97E-04
30	GO:2001141: regulation of RNA biosynthetic process	9.97E-04
31	GO:0010371: regulation of gibberellin biosynthetic process	9.97E-04
32	GO:0010239: chloroplast mRNA processing	9.97E-04
33	GO:0019048: modulation by virus of host morphology or physiology	9.97E-04
34	GO:0009658: chloroplast organization	1.05E-03
35	GO:0051567: histone H3-K9 methylation	1.32E-03
36	GO:0015713: phosphoglycerate transport	1.32E-03
37	GO:0010021: amylopectin biosynthetic process	1.32E-03
38	GO:0045727: positive regulation of translation	1.32E-03
39	GO:0015994: chlorophyll metabolic process	1.32E-03
40	GO:0010182: sugar mediated signaling pathway	1.48E-03
41	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.53E-03
42	GO:0048359: mucilage metabolic process involved in seed coat development	1.68E-03
43	GO:0006564: L-serine biosynthetic process	1.68E-03
44	GO:0010236: plastoquinone biosynthetic process	1.68E-03
45	GO:0006665: sphingolipid metabolic process	1.68E-03
46	GO:0009913: epidermal cell differentiation	2.07E-03
47	GO:0016458: gene silencing	2.07E-03
48	GO:0006561: proline biosynthetic process	2.07E-03
49	GO:0042549: photosystem II stabilization	2.07E-03
50	GO:0000470: maturation of LSU-rRNA	2.07E-03
51	GO:0071805: potassium ion transmembrane transport	2.34E-03
52	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	2.49E-03
53	GO:1901259: chloroplast rRNA processing	2.49E-03
54	GO:0010189: vitamin E biosynthetic process	2.49E-03
55	GO:0010019: chloroplast-nucleus signaling pathway	2.49E-03
56	GO:0016042: lipid catabolic process	2.51E-03
57	GO:0042744: hydrogen peroxide catabolic process	2.53E-03
58	GO:0009409: response to cold	2.57E-03
59	GO:1900057: positive regulation of leaf senescence	2.93E-03
60	GO:0050829: defense response to Gram-negative bacterium	2.93E-03
61	GO:0009645: response to low light intensity stimulus	2.93E-03
62	GO:0006400: tRNA modification	2.93E-03
63	GO:0009395: phospholipid catabolic process	2.93E-03
64	GO:0009772: photosynthetic electron transport in photosystem II	2.93E-03
65	GO:0030091: protein repair	3.40E-03
66	GO:0006353: DNA-templated transcription, termination	3.40E-03
67	GO:0070413: trehalose metabolism in response to stress	3.40E-03
68	GO:0031540: regulation of anthocyanin biosynthetic process	3.40E-03
69	GO:0016559: peroxisome fission	3.40E-03
70	GO:0045292: mRNA cis splicing, via spliceosome	3.40E-03
71	GO:0008610: lipid biosynthetic process	3.40E-03
72	GO:0018298: protein-chromophore linkage	3.42E-03
73	GO:0010311: lateral root formation	3.59E-03
74	GO:0071482: cellular response to light stimulus	3.88E-03
75	GO:0009631: cold acclimation	3.95E-03
76	GO:0009637: response to blue light	4.33E-03
77	GO:0034765: regulation of ion transmembrane transport	4.40E-03
78	GO:0000373: Group II intron splicing	4.40E-03
79	GO:0015780: nucleotide-sugar transport	4.40E-03
80	GO:0010205: photoinhibition	4.93E-03
81	GO:0042761: very long-chain fatty acid biosynthetic process	4.93E-03
82	GO:0009688: abscisic acid biosynthetic process	5.48E-03
83	GO:0030422: production of siRNA involved in RNA interference	5.48E-03
84	GO:0048829: root cap development	5.48E-03
85	GO:0010114: response to red light	5.57E-03
86	GO:0008643: carbohydrate transport	6.02E-03
87	GO:0008285: negative regulation of cell proliferation	6.06E-03
88	GO:0006352: DNA-templated transcription, initiation	6.06E-03
89	GO:0009750: response to fructose	6.06E-03
90	GO:0048765: root hair cell differentiation	6.06E-03
91	GO:0000038: very long-chain fatty acid metabolic process	6.06E-03
92	GO:0006855: drug transmembrane transport	6.50E-03
93	GO:0016024: CDP-diacylglycerol biosynthetic process	6.66E-03
94	GO:0006820: anion transport	6.66E-03
95	GO:0010628: positive regulation of gene expression	7.28E-03
96	GO:0006006: glucose metabolic process	7.28E-03
97	GO:0010229: inflorescence development	7.28E-03
98	GO:0009718: anthocyanin-containing compound biosynthetic process	7.28E-03
99	GO:0010020: chloroplast fission	7.91E-03
100	GO:0019253: reductive pentose-phosphate cycle	7.91E-03
101	GO:0048467: gynoecium development	7.91E-03
102	GO:0010143: cutin biosynthetic process	7.91E-03
103	GO:0071732: cellular response to nitric oxide	8.57E-03
104	GO:0009225: nucleotide-sugar metabolic process	8.57E-03
105	GO:0055114: oxidation-reduction process	8.66E-03
106	GO:0010025: wax biosynthetic process	9.25E-03
107	GO:0006636: unsaturated fatty acid biosynthetic process	9.25E-03
108	GO:0042023: DNA endoreduplication	9.25E-03
109	GO:0000027: ribosomal large subunit assembly	9.94E-03
110	GO:0007010: cytoskeleton organization	9.94E-03
111	GO:0005992: trehalose biosynthetic process	9.94E-03
112	GO:0006869: lipid transport	1.04E-02
113	GO:0007017: microtubule-based process	1.07E-02
114	GO:0009695: jasmonic acid biosynthetic process	1.07E-02
115	GO:0010073: meristem maintenance	1.07E-02
116	GO:0005975: carbohydrate metabolic process	1.07E-02
117	GO:0031408: oxylipin biosynthetic process	1.14E-02
118	GO:0003333: amino acid transmembrane transport	1.14E-02
119	GO:0016998: cell wall macromolecule catabolic process	1.14E-02
120	GO:0006306: DNA methylation	1.14E-02
121	GO:0032259: methylation	1.15E-02
122	GO:0035428: hexose transmembrane transport	1.21E-02
123	GO:0030245: cellulose catabolic process	1.21E-02
124	GO:0071369: cellular response to ethylene stimulus	1.29E-02
125	GO:0010227: floral organ abscission	1.29E-02
126	GO:0010091: trichome branching	1.37E-02
127	GO:0009306: protein secretion	1.37E-02
128	GO:0042391: regulation of membrane potential	1.53E-02
129	GO:0000413: protein peptidyl-prolyl isomerization	1.53E-02
130	GO:0009790: embryo development	1.57E-02
131	GO:0009958: positive gravitropism	1.62E-02
132	GO:0046323: glucose import	1.62E-02
133	GO:0006342: chromatin silencing	1.62E-02
134	GO:0006633: fatty acid biosynthetic process	1.69E-02
135	GO:0015986: ATP synthesis coupled proton transport	1.70E-02
136	GO:0019252: starch biosynthetic process	1.79E-02
137	GO:0007623: circadian rhythm	1.86E-02
138	GO:0009734: auxin-activated signaling pathway	1.87E-02
139	GO:0002229: defense response to oomycetes	1.88E-02
140	GO:0000302: response to reactive oxygen species	1.88E-02
141	GO:0009451: RNA modification	1.90E-02
142	GO:0071281: cellular response to iron ion	2.06E-02
143	GO:0010252: auxin homeostasis	2.15E-02
144	GO:0051607: defense response to virus	2.34E-02
145	GO:0009416: response to light stimulus	2.50E-02
146	GO:0009816: defense response to bacterium, incompatible interaction	2.54E-02
147	GO:0010411: xyloglucan metabolic process	2.74E-02
148	GO:0042254: ribosome biogenesis	2.93E-02
149	GO:0009817: defense response to fungus, incompatible interaction	2.95E-02
150	GO:0045893: positive regulation of transcription, DNA-templated	2.97E-02
151	GO:0009832: plant-type cell wall biogenesis	3.05E-02
152	GO:0010218: response to far red light	3.16E-02
153	GO:0006810: transport	3.21E-02
154	GO:0007568: aging	3.27E-02
155	GO:0006865: amino acid transport	3.38E-02
156	GO:0045087: innate immune response	3.49E-02
157	GO:0080167: response to karrikin	3.56E-02
158	GO:0034599: cellular response to oxidative stress	3.60E-02
159	GO:0006839: mitochondrial transport	3.83E-02
160	GO:0008283: cell proliferation	4.18E-02
161	GO:0009640: photomorphogenesis	4.18E-02
162	GO:0009926: auxin polar transport	4.18E-02
163	GO:0042546: cell wall biogenesis	4.30E-02
164	GO:0009644: response to high light intensity	4.41E-02

Rank	GO Term	Adjusted P value
1	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
2	GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity	0.00E+00
3	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
4	GO:0019843: rRNA binding	2.19E-06
5	GO:0016788: hydrolase activity, acting on ester bonds	2.07E-05
6	GO:0004321: fatty-acyl-CoA synthase activity	1.91E-04
7	GO:0045485: omega-6 fatty acid desaturase activity	1.91E-04
8	GO:0005080: protein kinase C binding	1.91E-04
9	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	1.91E-04
10	GO:0030794: (S)-coclaurine-N-methyltransferase activity	1.91E-04
11	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	1.91E-04
12	GO:0052689: carboxylic ester hydrolase activity	3.24E-04
13	GO:0016630: protochlorophyllide reductase activity	4.29E-04
14	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	4.29E-04
15	GO:0047746: chlorophyllase activity	4.29E-04
16	GO:0004617: phosphoglycerate dehydrogenase activity	4.29E-04
17	GO:0033201: alpha-1,4-glucan synthase activity	4.29E-04
18	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	4.29E-04
19	GO:0008266: poly(U) RNA binding	5.55E-04
20	GO:0031409: pigment binding	6.92E-04
21	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	6.99E-04
22	GO:0004373: glycogen (starch) synthase activity	6.99E-04
23	GO:0005528: FK506 binding	7.65E-04
24	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	8.71E-04
25	GO:0035197: siRNA binding	9.97E-04
26	GO:0016851: magnesium chelatase activity	9.97E-04
27	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	9.97E-04
28	GO:0043023: ribosomal large subunit binding	9.97E-04
29	GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	9.97E-04
30	GO:0052793: pectin acetylesterase activity	1.32E-03
31	GO:0009011: starch synthase activity	1.32E-03
32	GO:0050378: UDP-glucuronate 4-epimerase activity	1.32E-03
33	GO:0015120: phosphoglycerate transmembrane transporter activity	1.32E-03
34	GO:0004659: prenyltransferase activity	1.32E-03
35	GO:0001053: plastid sigma factor activity	1.32E-03
36	GO:0010011: auxin binding	1.32E-03
37	GO:0016987: sigma factor activity	1.32E-03
38	GO:0010328: auxin influx transmembrane transporter activity	1.32E-03
39	GO:0003959: NADPH dehydrogenase activity	1.68E-03
40	GO:0008381: mechanically-gated ion channel activity	1.68E-03
41	GO:0009922: fatty acid elongase activity	1.68E-03
42	GO:0004130: cytochrome-c peroxidase activity	2.07E-03
43	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	2.07E-03
44	GO:0016688: L-ascorbate peroxidase activity	2.07E-03
45	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	2.07E-03
46	GO:0016791: phosphatase activity	2.21E-03
47	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.44E-03
48	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	2.49E-03
49	GO:0005242: inward rectifier potassium channel activity	2.49E-03
50	GO:0051920: peroxiredoxin activity	2.49E-03
51	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.49E-03
52	GO:0016168: chlorophyll binding	2.78E-03
53	GO:0052747: sinapyl alcohol dehydrogenase activity	3.40E-03
54	GO:0004033: aldo-keto reductase (NADP) activity	3.40E-03
55	GO:0016209: antioxidant activity	3.40E-03
56	GO:0042802: identical protein binding	4.37E-03
57	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	4.40E-03
58	GO:0016207: 4-coumarate-CoA ligase activity	4.40E-03
59	GO:0008168: methyltransferase activity	5.35E-03
60	GO:0004601: peroxidase activity	5.61E-03
61	GO:0045551: cinnamyl-alcohol dehydrogenase activity	6.66E-03
62	GO:0004521: endoribonuclease activity	6.66E-03
63	GO:0051287: NAD binding	6.74E-03
64	GO:0004565: beta-galactosidase activity	7.28E-03
65	GO:0004022: alcohol dehydrogenase (NAD) activity	7.28E-03
66	GO:0016491: oxidoreductase activity	8.35E-03
67	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	9.25E-03
68	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	9.25E-03
69	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	9.25E-03
70	GO:0004672: protein kinase activity	1.01E-02
71	GO:0015079: potassium ion transmembrane transporter activity	1.07E-02
72	GO:0016746: transferase activity, transferring acyl groups	1.10E-02
73	GO:0030570: pectate lyase activity	1.29E-02
74	GO:0008810: cellulase activity	1.29E-02
75	GO:0008514: organic anion transmembrane transporter activity	1.37E-02
76	GO:0005249: voltage-gated potassium channel activity	1.53E-02
77	GO:0030551: cyclic nucleotide binding	1.53E-02
78	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.62E-02
79	GO:0008080: N-acetyltransferase activity	1.62E-02
80	GO:0005355: glucose transmembrane transporter activity	1.70E-02
81	GO:0050662: coenzyme binding	1.70E-02
82	GO:0015297: antiporter activity	1.77E-02
83	GO:0008289: lipid binding	1.84E-02
84	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.88E-02
85	GO:0008017: microtubule binding	1.94E-02
86	GO:0004518: nuclease activity	1.97E-02
87	GO:0003824: catalytic activity	2.09E-02
88	GO:0005200: structural constituent of cytoskeleton	2.25E-02
89	GO:0016597: amino acid binding	2.34E-02
90	GO:0009931: calcium-dependent protein serine/threonine kinase activity	2.64E-02
91	GO:0004683: calmodulin-dependent protein kinase activity	2.74E-02
92	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.74E-02
93	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	2.84E-02
94	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.95E-02
95	GO:0015238: drug transmembrane transporter activity	3.05E-02
96	GO:0004222: metalloendopeptidase activity	3.16E-02
97	GO:0003993: acid phosphatase activity	3.60E-02
98	GO:0051539: 4 iron, 4 sulfur cluster binding	3.83E-02
99	GO:0050661: NADP binding	3.83E-02
100	GO:0043621: protein self-association	4.41E-02
101	GO:0015293: symporter activity	4.54E-02
102	GO:0003735: structural constituent of ribosome	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0009515: granal stacked thylakoid	0.00E+00
2	GO:0009507: chloroplast	5.22E-17
3	GO:0009535: chloroplast thylakoid membrane	9.61E-14
4	GO:0009534: chloroplast thylakoid	1.66E-13
5	GO:0009941: chloroplast envelope	5.53E-13
6	GO:0009579: thylakoid	7.53E-10
7	GO:0009570: chloroplast stroma	3.98E-08
8	GO:0009543: chloroplast thylakoid lumen	3.41E-05
9	GO:0048046: apoplast	5.64E-05
10	GO:0031977: thylakoid lumen	6.14E-05
11	GO:0016020: membrane	1.47E-04
12	GO:0009923: fatty acid elongase complex	1.91E-04
13	GO:0009782: photosystem I antenna complex	1.91E-04
14	GO:0010287: plastoglobule	3.00E-04
15	GO:0030076: light-harvesting complex	6.22E-04
16	GO:0010007: magnesium chelatase complex	6.99E-04
17	GO:0005719: nuclear euchromatin	9.97E-04
18	GO:0015630: microtubule cytoskeleton	9.97E-04
19	GO:0031969: chloroplast membrane	1.45E-03
20	GO:0009706: chloroplast inner membrane	1.61E-03
21	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	2.07E-03
22	GO:0009505: plant-type cell wall	2.20E-03
23	GO:0010319: stromule	2.34E-03
24	GO:0030529: intracellular ribonucleoprotein complex	2.63E-03
25	GO:0005618: cell wall	2.65E-03
26	GO:0009986: cell surface	2.93E-03
27	GO:0016021: integral component of membrane	3.05E-03
28	GO:0005886: plasma membrane	3.34E-03
29	GO:0009501: amyloplast	3.40E-03
30	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.40E-03
31	GO:0008180: COP9 signalosome	4.40E-03
32	GO:0046658: anchored component of plasma membrane	4.60E-03
33	GO:0015030: Cajal body	4.93E-03
34	GO:0005578: proteinaceous extracellular matrix	7.28E-03
35	GO:0000312: plastid small ribosomal subunit	7.91E-03
36	GO:0030095: chloroplast photosystem II	7.91E-03
37	GO:0009654: photosystem II oxygen evolving complex	1.07E-02
38	GO:0031225: anchored component of membrane	1.23E-02
39	GO:0009522: photosystem I	1.70E-02
40	GO:0019898: extrinsic component of membrane	1.79E-02
41	GO:0032580: Golgi cisterna membrane	2.15E-02
42	GO:0009536: plastid	2.46E-02
43	GO:0005576: extracellular region	2.51E-02
44	GO:0019005: SCF ubiquitin ligase complex	2.95E-02
45	GO:0009707: chloroplast outer membrane	2.95E-02
46	GO:0005777: peroxisome	2.97E-02
47	GO:0005874: microtubule	3.44E-02
48	GO:0022625: cytosolic large ribosomal subunit	3.74E-02