co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G01680

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042493: response to drug	0.00E+00
2	GO:0042371: vitamin K biosynthetic process	0.00E+00
3	GO:0006399: tRNA metabolic process	0.00E+00
4	GO:0070125: mitochondrial translational elongation	0.00E+00
5	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
6	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
7	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
8	GO:0033494: ferulate metabolic process	0.00E+00
9	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
10	GO:0016553: base conversion or substitution editing	0.00E+00
11	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
12	GO:0007638: mechanosensory behavior	0.00E+00
13	GO:0006412: translation	5.31E-07
14	GO:0032544: plastid translation	1.49E-05
15	GO:0009658: chloroplast organization	2.09E-05
16	GO:0042254: ribosome biogenesis	2.21E-05
17	GO:0045454: cell redox homeostasis	6.66E-05
18	GO:0015995: chlorophyll biosynthetic process	1.05E-04
19	GO:0010067: procambium histogenesis	2.18E-04
20	GO:0000413: protein peptidyl-prolyl isomerization	3.28E-04
21	GO:0015979: photosynthesis	3.33E-04
22	GO:1904966: positive regulation of vitamin E biosynthetic process	3.34E-04
23	GO:1904964: positive regulation of phytol biosynthetic process	3.34E-04
24	GO:0042759: long-chain fatty acid biosynthetic process	3.34E-04
25	GO:0006430: lysyl-tRNA aminoacylation	3.34E-04
26	GO:0071588: hydrogen peroxide mediated signaling pathway	3.34E-04
27	GO:0060627: regulation of vesicle-mediated transport	3.34E-04
28	GO:0043489: RNA stabilization	3.34E-04
29	GO:0009735: response to cytokinin	3.93E-04
30	GO:0006779: porphyrin-containing compound biosynthetic process	6.19E-04
31	GO:0006782: protoporphyrinogen IX biosynthetic process	7.22E-04
32	GO:0034755: iron ion transmembrane transport	7.29E-04
33	GO:0006568: tryptophan metabolic process	7.29E-04
34	GO:0010270: photosystem II oxygen evolving complex assembly	7.29E-04
35	GO:1902326: positive regulation of chlorophyll biosynthetic process	7.29E-04
36	GO:0006816: calcium ion transport	8.32E-04
37	GO:0043085: positive regulation of catalytic activity	8.32E-04
38	GO:0006457: protein folding	8.58E-04
39	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	1.18E-03
40	GO:0090506: axillary shoot meristem initiation	1.18E-03
41	GO:0010581: regulation of starch biosynthetic process	1.18E-03
42	GO:0010223: secondary shoot formation	1.21E-03
43	GO:0010020: chloroplast fission	1.21E-03
44	GO:0010025: wax biosynthetic process	1.50E-03
45	GO:0006228: UTP biosynthetic process	1.70E-03
46	GO:0043572: plastid fission	1.70E-03
47	GO:0006986: response to unfolded protein	1.70E-03
48	GO:2001141: regulation of RNA biosynthetic process	1.70E-03
49	GO:0007231: osmosensory signaling pathway	1.70E-03
50	GO:0051085: chaperone mediated protein folding requiring cofactor	1.70E-03
51	GO:0010239: chloroplast mRNA processing	1.70E-03
52	GO:0006241: CTP biosynthetic process	1.70E-03
53	GO:0009650: UV protection	1.70E-03
54	GO:0006424: glutamyl-tRNA aminoacylation	1.70E-03
55	GO:0006165: nucleoside diphosphate phosphorylation	1.70E-03
56	GO:0007017: microtubule-based process	1.84E-03
57	GO:0006418: tRNA aminoacylation for protein translation	1.84E-03
58	GO:0042991: transcription factor import into nucleus	2.28E-03
59	GO:0006808: regulation of nitrogen utilization	2.28E-03
60	GO:0006183: GTP biosynthetic process	2.28E-03
61	GO:0015994: chlorophyll metabolic process	2.28E-03
62	GO:0033500: carbohydrate homeostasis	2.28E-03
63	GO:0000919: cell plate assembly	2.28E-03
64	GO:0009411: response to UV	2.41E-03
65	GO:0001944: vasculature development	2.41E-03
66	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.41E-03
67	GO:0010089: xylem development	2.62E-03
68	GO:0006813: potassium ion transport	2.89E-03
69	GO:0048359: mucilage metabolic process involved in seed coat development	2.91E-03
70	GO:0032543: mitochondrial translation	2.91E-03
71	GO:0006564: L-serine biosynthetic process	2.91E-03
72	GO:0010236: plastoquinone biosynthetic process	2.91E-03
73	GO:0045038: protein import into chloroplast thylakoid membrane	2.91E-03
74	GO:0031365: N-terminal protein amino acid modification	2.91E-03
75	GO:0042335: cuticle development	3.06E-03
76	GO:0032973: amino acid export	3.60E-03
77	GO:0006014: D-ribose metabolic process	3.60E-03
78	GO:0006354: DNA-templated transcription, elongation	3.60E-03
79	GO:0042549: photosystem II stabilization	3.60E-03
80	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.60E-03
81	GO:0016554: cytidine to uridine editing	3.60E-03
82	GO:0006828: manganese ion transport	3.60E-03
83	GO:0006694: steroid biosynthetic process	4.33E-03
84	GO:1901259: chloroplast rRNA processing	4.33E-03
85	GO:0009854: oxidative photosynthetic carbon pathway	4.33E-03
86	GO:0010019: chloroplast-nucleus signaling pathway	4.33E-03
87	GO:0010555: response to mannitol	4.33E-03
88	GO:0042372: phylloquinone biosynthetic process	4.33E-03
89	GO:0009828: plant-type cell wall loosening	4.94E-03
90	GO:0008272: sulfate transport	5.11E-03
91	GO:0006400: tRNA modification	5.11E-03
92	GO:0009772: photosynthetic electron transport in photosystem II	5.11E-03
93	GO:0043090: amino acid import	5.11E-03
94	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	5.11E-03
95	GO:0071669: plant-type cell wall organization or biogenesis	5.11E-03
96	GO:0010027: thylakoid membrane organization	5.89E-03
97	GO:0006353: DNA-templated transcription, termination	5.94E-03
98	GO:0048564: photosystem I assembly	5.94E-03
99	GO:0045292: mRNA cis splicing, via spliceosome	5.94E-03
100	GO:0030091: protein repair	5.94E-03
101	GO:0009819: drought recovery	5.94E-03
102	GO:0009642: response to light intensity	5.94E-03
103	GO:0009657: plastid organization	6.81E-03
104	GO:0009808: lignin metabolic process	6.81E-03
105	GO:0071482: cellular response to light stimulus	6.81E-03
106	GO:0019430: removal of superoxide radicals	6.81E-03
107	GO:0042742: defense response to bacterium	7.13E-03
108	GO:0006869: lipid transport	7.60E-03
109	GO:0018298: protein-chromophore linkage	7.70E-03
110	GO:0048481: plant ovule development	7.70E-03
111	GO:0006783: heme biosynthetic process	7.73E-03
112	GO:0000373: Group II intron splicing	7.73E-03
113	GO:0015780: nucleotide-sugar transport	7.73E-03
114	GO:0080144: amino acid homeostasis	7.73E-03
115	GO:0042761: very long-chain fatty acid biosynthetic process	8.68E-03
116	GO:1900865: chloroplast RNA modification	8.68E-03
117	GO:0010380: regulation of chlorophyll biosynthetic process	8.68E-03
118	GO:0009631: cold acclimation	8.91E-03
119	GO:0009451: RNA modification	9.37E-03
120	GO:0006949: syncytium formation	9.69E-03
121	GO:0055114: oxidation-reduction process	9.72E-03
122	GO:0009637: response to blue light	9.77E-03
123	GO:0034599: cellular response to oxidative stress	1.02E-02
124	GO:0006879: cellular iron ion homeostasis	1.07E-02
125	GO:0006352: DNA-templated transcription, initiation	1.07E-02
126	GO:0006415: translational termination	1.07E-02
127	GO:0018119: peptidyl-cysteine S-nitrosylation	1.07E-02
128	GO:0009773: photosynthetic electron transport in photosystem I	1.07E-02
129	GO:0009073: aromatic amino acid family biosynthetic process	1.07E-02
130	GO:0030001: metal ion transport	1.12E-02
131	GO:0010114: response to red light	1.26E-02
132	GO:0010143: cutin biosynthetic process	1.41E-02
133	GO:0010207: photosystem II assembly	1.41E-02
134	GO:0009826: unidimensional cell growth	1.51E-02
135	GO:0070588: calcium ion transmembrane transport	1.53E-02
136	GO:0009664: plant-type cell wall organization	1.59E-02
137	GO:0042538: hyperosmotic salinity response	1.59E-02
138	GO:0019762: glucosinolate catabolic process	1.65E-02
139	GO:0009736: cytokinin-activated signaling pathway	1.71E-02
140	GO:0007010: cytoskeleton organization	1.77E-02
141	GO:0019344: cysteine biosynthetic process	1.77E-02
142	GO:0000027: ribosomal large subunit assembly	1.77E-02
143	GO:0009768: photosynthesis, light harvesting in photosystem I	1.90E-02
144	GO:0030245: cellulose catabolic process	2.17E-02
145	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.17E-02
146	GO:0016226: iron-sulfur cluster assembly	2.17E-02
147	GO:0019722: calcium-mediated signaling	2.45E-02
148	GO:0016117: carotenoid biosynthetic process	2.60E-02
149	GO:0000271: polysaccharide biosynthetic process	2.74E-02
150	GO:0010087: phloem or xylem histogenesis	2.74E-02
151	GO:0010118: stomatal movement	2.74E-02
152	GO:0006662: glycerol ether metabolic process	2.89E-02
153	GO:0007018: microtubule-based movement	3.05E-02
154	GO:0019252: starch biosynthetic process	3.20E-02
155	GO:0048825: cotyledon development	3.20E-02
156	GO:0016042: lipid catabolic process	3.27E-02
157	GO:0016132: brassinosteroid biosynthetic process	3.36E-02
158	GO:0071554: cell wall organization or biogenesis	3.36E-02
159	GO:0000302: response to reactive oxygen species	3.36E-02
160	GO:0009408: response to heat	3.39E-02
161	GO:0042744: hydrogen peroxide catabolic process	3.47E-02
162	GO:0010583: response to cyclopentenone	3.52E-02
163	GO:0007267: cell-cell signaling	4.02E-02
164	GO:0071805: potassium ion transmembrane transport	4.02E-02

Rank	GO Term	Adjusted P value
1	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
2	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
3	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
4	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
5	GO:0005048: signal sequence binding	0.00E+00
6	GO:0050614: delta24-sterol reductase activity	0.00E+00
7	GO:0009974: zeinoxanthin epsilon hydroxylase activity	0.00E+00
8	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
9	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	0.00E+00
10	GO:0008887: glycerate kinase activity	0.00E+00
11	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
12	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
13	GO:0019843: rRNA binding	1.09E-14
14	GO:0003735: structural constituent of ribosome	2.50E-08
15	GO:0051920: peroxiredoxin activity	3.40E-08
16	GO:0016209: antioxidant activity	1.21E-07
17	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.79E-06
18	GO:0004659: prenyltransferase activity	7.06E-05
19	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	2.18E-04
20	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	3.34E-04
21	GO:0004425: indole-3-glycerol-phosphate synthase activity	3.34E-04
22	GO:0004824: lysine-tRNA ligase activity	3.34E-04
23	GO:0004655: porphobilinogen synthase activity	3.34E-04
24	GO:0008047: enzyme activator activity	7.22E-04
25	GO:0047746: chlorophyllase activity	7.29E-04
26	GO:0008509: anion transmembrane transporter activity	7.29E-04
27	GO:0004617: phosphoglycerate dehydrogenase activity	7.29E-04
28	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	7.29E-04
29	GO:0016630: protochlorophyllide reductase activity	7.29E-04
30	GO:0004601: peroxidase activity	8.00E-04
31	GO:0016788: hydrolase activity, acting on ester bonds	8.27E-04
32	GO:0004565: beta-galactosidase activity	1.07E-03
33	GO:0030267: glyoxylate reductase (NADP) activity	1.18E-03
34	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	1.18E-03
35	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	1.18E-03
36	GO:0070330: aromatase activity	1.18E-03
37	GO:0017150: tRNA dihydrouridine synthase activity	1.18E-03
38	GO:0050734: hydroxycinnamoyltransferase activity	1.18E-03
39	GO:0002161: aminoacyl-tRNA editing activity	1.18E-03
40	GO:0004148: dihydrolipoyl dehydrogenase activity	1.18E-03
41	GO:0008266: poly(U) RNA binding	1.21E-03
42	GO:0004550: nucleoside diphosphate kinase activity	1.70E-03
43	GO:0008097: 5S rRNA binding	1.70E-03
44	GO:0001872: (1->3)-beta-D-glucan binding	1.70E-03
45	GO:0016149: translation release factor activity, codon specific	1.70E-03
46	GO:0008324: cation transmembrane transporter activity	1.84E-03
47	GO:0043495: protein anchor	2.28E-03
48	GO:0001053: plastid sigma factor activity	2.28E-03
49	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	2.28E-03
50	GO:0016987: sigma factor activity	2.28E-03
51	GO:1990137: plant seed peroxidase activity	2.28E-03
52	GO:0046527: glucosyltransferase activity	2.28E-03
53	GO:0004812: aminoacyl-tRNA ligase activity	2.84E-03
54	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.91E-03
55	GO:0018685: alkane 1-monooxygenase activity	2.91E-03
56	GO:0004040: amidase activity	2.91E-03
57	GO:0003959: NADPH dehydrogenase activity	2.91E-03
58	GO:0004791: thioredoxin-disulfide reductase activity	3.55E-03
59	GO:0016688: L-ascorbate peroxidase activity	3.60E-03
60	GO:0004130: cytochrome-c peroxidase activity	3.60E-03
61	GO:0008289: lipid binding	4.13E-03
62	GO:0004747: ribokinase activity	4.33E-03
63	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	4.33E-03
64	GO:0051753: mannan synthase activity	4.33E-03
65	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	4.33E-03
66	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	4.64E-03
67	GO:0016831: carboxy-lyase activity	5.11E-03
68	GO:0008235: metalloexopeptidase activity	5.11E-03
69	GO:0015140: malate transmembrane transporter activity	5.11E-03
70	GO:0019899: enzyme binding	5.11E-03
71	GO:0008237: metallopeptidase activity	5.25E-03
72	GO:0005200: structural constituent of cytoskeleton	5.25E-03
73	GO:0046872: metal ion binding	5.39E-03
74	GO:0052689: carboxylic ester hydrolase activity	5.85E-03
75	GO:0004033: aldo-keto reductase (NADP) activity	5.94E-03
76	GO:0008865: fructokinase activity	5.94E-03
77	GO:0008312: 7S RNA binding	5.94E-03
78	GO:0052747: sinapyl alcohol dehydrogenase activity	5.94E-03
79	GO:0016168: chlorophyll binding	6.23E-03
80	GO:0003747: translation release factor activity	7.73E-03
81	GO:0004222: metalloendopeptidase activity	8.49E-03
82	GO:0005384: manganese ion transmembrane transporter activity	8.68E-03
83	GO:0047617: acyl-CoA hydrolase activity	8.68E-03
84	GO:0005381: iron ion transmembrane transporter activity	8.68E-03
85	GO:0016740: transferase activity	8.93E-03
86	GO:0003924: GTPase activity	9.09E-03
87	GO:0008017: microtubule binding	9.65E-03
88	GO:0030234: enzyme regulator activity	9.69E-03
89	GO:0009055: electron carrier activity	1.01E-02
90	GO:0004177: aminopeptidase activity	1.07E-02
91	GO:0000049: tRNA binding	1.18E-02
92	GO:0045551: cinnamyl-alcohol dehydrogenase activity	1.18E-02
93	GO:0042802: identical protein binding	1.24E-02
94	GO:0008081: phosphoric diester hydrolase activity	1.29E-02
95	GO:0015095: magnesium ion transmembrane transporter activity	1.29E-02
96	GO:0031072: heat shock protein binding	1.29E-02
97	GO:0005262: calcium channel activity	1.29E-02
98	GO:0043621: protein self-association	1.37E-02
99	GO:0003729: mRNA binding	1.54E-02
100	GO:0031409: pigment binding	1.65E-02
101	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.71E-02
102	GO:0051536: iron-sulfur cluster binding	1.77E-02
103	GO:0005528: FK506 binding	1.77E-02
104	GO:0005509: calcium ion binding	1.86E-02
105	GO:0003777: microtubule motor activity	1.89E-02
106	GO:0051087: chaperone binding	1.90E-02
107	GO:0015079: potassium ion transmembrane transporter activity	1.90E-02
108	GO:0004176: ATP-dependent peptidase activity	2.03E-02
109	GO:0033612: receptor serine/threonine kinase binding	2.03E-02
110	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	2.09E-02
111	GO:0016760: cellulose synthase (UDP-forming) activity	2.31E-02
112	GO:0022891: substrate-specific transmembrane transporter activity	2.31E-02
113	GO:0030570: pectate lyase activity	2.31E-02
114	GO:0008810: cellulase activity	2.31E-02
115	GO:0051082: unfolded protein binding	2.43E-02
116	GO:0008514: organic anion transmembrane transporter activity	2.45E-02
117	GO:0047134: protein-disulfide reductase activity	2.60E-02
118	GO:0005102: receptor binding	2.60E-02
119	GO:0008080: N-acetyltransferase activity	2.89E-02
120	GO:0000156: phosphorelay response regulator activity	3.69E-02
121	GO:0004519: endonuclease activity	3.76E-02
122	GO:0005516: calmodulin binding	3.92E-02
123	GO:0016722: oxidoreductase activity, oxidizing metal ions	4.02E-02
124	GO:0016597: amino acid binding	4.19E-02
125	GO:0016413: O-acetyltransferase activity	4.19E-02
126	GO:0005525: GTP binding	4.45E-02
127	GO:0009931: calcium-dependent protein serine/threonine kinase activity	4.72E-02
128	GO:0030247: polysaccharide binding	4.90E-02
129	GO:0004683: calmodulin-dependent protein kinase activity	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	0.00E+00
2	GO:0009507: chloroplast	7.84E-39
3	GO:0009570: chloroplast stroma	3.93E-35
4	GO:0009941: chloroplast envelope	3.68E-32
5	GO:0009579: thylakoid	4.15E-12
6	GO:0031977: thylakoid lumen	5.96E-11
7	GO:0009543: chloroplast thylakoid lumen	2.35E-10
8	GO:0009535: chloroplast thylakoid membrane	1.01E-09
9	GO:0009534: chloroplast thylakoid	7.76E-09
10	GO:0005840: ribosome	2.47E-08
11	GO:0046658: anchored component of plasma membrane	7.87E-08
12	GO:0000311: plastid large ribosomal subunit	1.46E-06
13	GO:0000428: DNA-directed RNA polymerase complex	3.34E-04
14	GO:0009547: plastid ribosome	3.34E-04
15	GO:0048046: apoplast	3.36E-04
16	GO:0031225: anchored component of membrane	3.73E-04
17	GO:0009505: plant-type cell wall	3.85E-04
18	GO:0045298: tubulin complex	5.24E-04
19	GO:0080085: signal recognition particle, chloroplast targeting	7.29E-04
20	GO:0005874: microtubule	1.09E-03
21	GO:0031969: chloroplast membrane	1.16E-03
22	GO:0000312: plastid small ribosomal subunit	1.21E-03
23	GO:0005875: microtubule associated complex	1.50E-03
24	GO:0009654: photosystem II oxygen evolving complex	1.84E-03
25	GO:0042651: thylakoid membrane	1.84E-03
26	GO:0000793: condensed chromosome	3.60E-03
27	GO:0019898: extrinsic component of membrane	3.81E-03
28	GO:0005762: mitochondrial large ribosomal subunit	4.33E-03
29	GO:0000794: condensed nuclear chromosome	5.11E-03
30	GO:0009533: chloroplast stromal thylakoid	5.11E-03
31	GO:0010319: stromule	5.25E-03
32	GO:0009295: nucleoid	5.25E-03
33	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	6.81E-03
34	GO:0005811: lipid particle	6.81E-03
35	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	7.73E-03
36	GO:0005886: plasma membrane	8.74E-03
37	GO:0009536: plastid	1.06E-02
38	GO:0030076: light-harvesting complex	1.53E-02
39	GO:0005618: cell wall	1.82E-02
40	GO:0009532: plastid stroma	2.03E-02
41	GO:0016020: membrane	2.30E-02
42	GO:0005871: kinesin complex	2.60E-02
43	GO:0010287: plastoglobule	2.89E-02
44	GO:0009522: photosystem I	3.05E-02
45	GO:0009523: photosystem II	3.20E-02
46	GO:0043231: intracellular membrane-bounded organelle	3.82E-02
47	GO:0005759: mitochondrial matrix	3.82E-02
48	GO:0030529: intracellular ribonucleoprotein complex	4.37E-02