co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G01550

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042493: response to drug	0.00E+00
2	GO:0033494: ferulate metabolic process	0.00E+00
3	GO:0006066: alcohol metabolic process	0.00E+00
4	GO:0009773: photosynthetic electron transport in photosystem I	1.88E-07
5	GO:0042335: cuticle development	4.32E-06
6	GO:0090391: granum assembly	6.80E-06
7	GO:0010196: nonphotochemical quenching	1.26E-04
8	GO:0033481: galacturonate biosynthetic process	1.98E-04
9	GO:0042371: vitamin K biosynthetic process	1.98E-04
10	GO:0071596: ubiquitin-dependent protein catabolic process via the N-end rule pathway	1.98E-04
11	GO:0046520: sphingoid biosynthetic process	1.98E-04
12	GO:0071277: cellular response to calcium ion	1.98E-04
13	GO:0010027: thylakoid membrane organization	2.88E-04
14	GO:0010205: photoinhibition	2.92E-04
15	GO:0009735: response to cytokinin	3.15E-04
16	GO:0015979: photosynthesis	3.77E-04
17	GO:0000038: very long-chain fatty acid metabolic process	3.97E-04
18	GO:0001736: establishment of planar polarity	4.43E-04
19	GO:0010024: phytochromobilin biosynthetic process	4.43E-04
20	GO:0043255: regulation of carbohydrate biosynthetic process	4.43E-04
21	GO:0010115: regulation of abscisic acid biosynthetic process	4.43E-04
22	GO:0055114: oxidation-reduction process	4.56E-04
23	GO:0006869: lipid transport	4.87E-04
24	GO:0006633: fatty acid biosynthetic process	5.07E-04
25	GO:0016042: lipid catabolic process	5.70E-04
26	GO:0010143: cutin biosynthetic process	5.82E-04
27	GO:0010167: response to nitrate	6.52E-04
28	GO:0006696: ergosterol biosynthetic process	7.22E-04
29	GO:0006788: heme oxidation	7.22E-04
30	GO:0010025: wax biosynthetic process	7.25E-04
31	GO:0006636: unsaturated fatty acid biosynthetic process	7.25E-04
32	GO:0016998: cell wall macromolecule catabolic process	9.64E-04
33	GO:0031408: oxylipin biosynthetic process	9.64E-04
34	GO:0006168: adenine salvage	1.03E-03
35	GO:0006166: purine ribonucleoside salvage	1.03E-03
36	GO:0071484: cellular response to light intensity	1.03E-03
37	GO:0080170: hydrogen peroxide transmembrane transport	1.03E-03
38	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.03E-03
39	GO:0009650: UV protection	1.03E-03
40	GO:0006857: oligopeptide transport	1.20E-03
41	GO:0009956: radial pattern formation	1.37E-03
42	GO:0006183: GTP biosynthetic process	1.37E-03
43	GO:0045727: positive regulation of translation	1.37E-03
44	GO:0031122: cytoplasmic microtubule organization	1.37E-03
45	GO:0071555: cell wall organization	1.55E-03
46	GO:0009416: response to light stimulus	1.63E-03
47	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.64E-03
48	GO:0006564: L-serine biosynthetic process	1.74E-03
49	GO:0044209: AMP salvage	1.74E-03
50	GO:0030308: negative regulation of cell growth	1.74E-03
51	GO:0016120: carotene biosynthetic process	1.74E-03
52	GO:0006561: proline biosynthetic process	2.14E-03
53	GO:0048759: xylem vessel member cell differentiation	2.14E-03
54	GO:0010405: arabinogalactan protein metabolic process	2.14E-03
55	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.14E-03
56	GO:0009913: epidermal cell differentiation	2.14E-03
57	GO:0018258: protein O-linked glycosylation via hydroxyproline	2.14E-03
58	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	2.14E-03
59	GO:0035435: phosphate ion transmembrane transport	2.14E-03
60	GO:0010337: regulation of salicylic acid metabolic process	2.14E-03
61	GO:0006596: polyamine biosynthetic process	2.14E-03
62	GO:0006694: steroid biosynthetic process	2.57E-03
63	GO:0016126: sterol biosynthetic process	2.76E-03
64	GO:0009395: phospholipid catabolic process	3.03E-03
65	GO:0009772: photosynthetic electron transport in photosystem II	3.03E-03
66	GO:0030497: fatty acid elongation	3.03E-03
67	GO:0050829: defense response to Gram-negative bacterium	3.03E-03
68	GO:1900057: positive regulation of leaf senescence	3.03E-03
69	GO:0010444: guard mother cell differentiation	3.03E-03
70	GO:0015995: chlorophyll biosynthetic process	3.24E-03
71	GO:0010411: xyloglucan metabolic process	3.24E-03
72	GO:0009704: de-etiolation	3.51E-03
73	GO:0031540: regulation of anthocyanin biosynthetic process	3.51E-03
74	GO:0055075: potassium ion homeostasis	3.51E-03
75	GO:0008610: lipid biosynthetic process	3.51E-03
76	GO:0030091: protein repair	3.51E-03
77	GO:0006605: protein targeting	3.51E-03
78	GO:0032544: plastid translation	4.02E-03
79	GO:0009808: lignin metabolic process	4.02E-03
80	GO:0010206: photosystem II repair	4.54E-03
81	GO:0034765: regulation of ion transmembrane transport	4.54E-03
82	GO:0090333: regulation of stomatal closure	4.54E-03
83	GO:0009414: response to water deprivation	5.40E-03
84	GO:0009688: abscisic acid biosynthetic process	5.67E-03
85	GO:0048829: root cap development	5.67E-03
86	GO:0019538: protein metabolic process	5.67E-03
87	GO:0006032: chitin catabolic process	5.67E-03
88	GO:0009926: auxin polar transport	5.85E-03
89	GO:0042546: cell wall biogenesis	6.09E-03
90	GO:0009750: response to fructose	6.27E-03
91	GO:0018119: peptidyl-cysteine S-nitrosylation	6.27E-03
92	GO:0048765: root hair cell differentiation	6.27E-03
93	GO:0010015: root morphogenesis	6.27E-03
94	GO:0016024: CDP-diacylglycerol biosynthetic process	6.89E-03
95	GO:0015706: nitrate transport	6.89E-03
96	GO:0006006: glucose metabolic process	7.52E-03
97	GO:0010229: inflorescence development	7.52E-03
98	GO:0009718: anthocyanin-containing compound biosynthetic process	7.52E-03
99	GO:0009725: response to hormone	7.52E-03
100	GO:0010628: positive regulation of gene expression	7.52E-03
101	GO:0080167: response to karrikin	7.86E-03
102	GO:0009809: lignin biosynthetic process	7.88E-03
103	GO:0048467: gynoecium development	8.19E-03
104	GO:0010207: photosystem II assembly	8.19E-03
105	GO:0009933: meristem structural organization	8.19E-03
106	GO:0019253: reductive pentose-phosphate cycle	8.19E-03
107	GO:0045893: positive regulation of transcription, DNA-templated	8.33E-03
108	GO:0010030: positive regulation of seed germination	8.87E-03
109	GO:0010053: root epidermal cell differentiation	8.87E-03
110	GO:0009225: nucleotide-sugar metabolic process	8.87E-03
111	GO:0009825: multidimensional cell growth	8.87E-03
112	GO:0071732: cellular response to nitric oxide	8.87E-03
113	GO:0006096: glycolytic process	9.33E-03
114	GO:0009409: response to cold	9.55E-03
115	GO:0042023: DNA endoreduplication	9.57E-03
116	GO:0006833: water transport	9.57E-03
117	GO:0006487: protein N-linked glycosylation	1.03E-02
118	GO:0000027: ribosomal large subunit assembly	1.03E-02
119	GO:0019953: sexual reproduction	1.10E-02
120	GO:0007017: microtubule-based process	1.10E-02
121	GO:0009695: jasmonic acid biosynthetic process	1.10E-02
122	GO:0005975: carbohydrate metabolic process	1.16E-02
123	GO:0003333: amino acid transmembrane transport	1.18E-02
124	GO:0048511: rhythmic process	1.18E-02
125	GO:0030245: cellulose catabolic process	1.26E-02
126	GO:0009411: response to UV	1.34E-02
127	GO:0071369: cellular response to ethylene stimulus	1.34E-02
128	GO:0009306: protein secretion	1.42E-02
129	GO:0019722: calcium-mediated signaling	1.42E-02
130	GO:0042127: regulation of cell proliferation	1.42E-02
131	GO:0016117: carotenoid biosynthetic process	1.50E-02
132	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.50E-02
133	GO:0034220: ion transmembrane transport	1.59E-02
134	GO:0010087: phloem or xylem histogenesis	1.59E-02
135	GO:0042631: cellular response to water deprivation	1.59E-02
136	GO:0042391: regulation of membrane potential	1.59E-02
137	GO:0010182: sugar mediated signaling pathway	1.67E-02
138	GO:0009958: positive gravitropism	1.67E-02
139	GO:0010305: leaf vascular tissue pattern formation	1.67E-02
140	GO:0015986: ATP synthesis coupled proton transport	1.76E-02
141	GO:0042752: regulation of circadian rhythm	1.76E-02
142	GO:0016132: brassinosteroid biosynthetic process	1.94E-02
143	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.94E-02
144	GO:0007623: circadian rhythm	1.95E-02
145	GO:0006979: response to oxidative stress	1.98E-02
146	GO:0071281: cellular response to iron ion	2.13E-02
147	GO:0010252: auxin homeostasis	2.23E-02
148	GO:0007267: cell-cell signaling	2.33E-02
149	GO:0071805: potassium ion transmembrane transport	2.33E-02
150	GO:0042128: nitrate assimilation	2.73E-02
151	GO:0048573: photoperiodism, flowering	2.84E-02
152	GO:0009826: unidimensional cell growth	2.91E-02
153	GO:0009658: chloroplast organization	3.02E-02
154	GO:0018298: protein-chromophore linkage	3.05E-02
155	GO:0030244: cellulose biosynthetic process	3.05E-02
156	GO:0042254: ribosome biogenesis	3.08E-02
157	GO:0010311: lateral root formation	3.16E-02
158	GO:0009834: plant-type secondary cell wall biogenesis	3.27E-02
159	GO:0007568: aging	3.38E-02
160	GO:0006810: transport	3.45E-02
161	GO:0006865: amino acid transport	3.50E-02
162	GO:0009637: response to blue light	3.61E-02
163	GO:0009744: response to sucrose	4.32E-02
164	GO:0008283: cell proliferation	4.32E-02
165	GO:0009640: photomorphogenesis	4.32E-02
166	GO:0009651: response to salt stress	4.42E-02
167	GO:0009644: response to high light intensity	4.57E-02
168	GO:0008643: carbohydrate transport	4.57E-02

Rank	GO Term	Adjusted P value
1	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
2	GO:0019146: arabinose-5-phosphate isomerase activity	0.00E+00
3	GO:0050614: delta24-sterol reductase activity	0.00E+00
4	GO:0045436: lycopene beta cyclase activity	0.00E+00
5	GO:0046577: long-chain-alcohol oxidase activity	0.00E+00
6	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
7	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
8	GO:0010487: thermospermine synthase activity	0.00E+00
9	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
10	GO:0004506: squalene monooxygenase activity	2.88E-05
11	GO:0052689: carboxylic ester hydrolase activity	5.14E-05
12	GO:0016768: spermine synthase activity	1.98E-04
13	GO:0000170: sphingosine hydroxylase activity	1.98E-04
14	GO:0030794: (S)-coclaurine-N-methyltransferase activity	1.98E-04
15	GO:0008568: microtubule-severing ATPase activity	1.98E-04
16	GO:0045485: omega-6 fatty acid desaturase activity	1.98E-04
17	GO:0004321: fatty-acyl-CoA synthase activity	1.98E-04
18	GO:0016788: hydrolase activity, acting on ester bonds	2.02E-04
19	GO:0016746: transferase activity, transferring acyl groups	2.58E-04
20	GO:0004617: phosphoglycerate dehydrogenase activity	4.43E-04
21	GO:0003938: IMP dehydrogenase activity	4.43E-04
22	GO:0042284: sphingolipid delta-4 desaturase activity	4.43E-04
23	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	4.43E-04
24	GO:0004565: beta-galactosidase activity	5.18E-04
25	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	7.22E-04
26	GO:0050734: hydroxycinnamoyltransferase activity	7.22E-04
27	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	7.25E-04
28	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	7.25E-04
29	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	7.25E-04
30	GO:0015293: symporter activity	8.82E-04
31	GO:0001872: (1->3)-beta-D-glucan binding	1.03E-03
32	GO:0003999: adenine phosphoribosyltransferase activity	1.03E-03
33	GO:0016851: magnesium chelatase activity	1.03E-03
34	GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity	1.03E-03
35	GO:0004392: heme oxygenase (decyclizing) activity	1.37E-03
36	GO:0010011: auxin binding	1.37E-03
37	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	1.37E-03
38	GO:0010328: auxin influx transmembrane transporter activity	1.37E-03
39	GO:0052793: pectin acetylesterase activity	1.37E-03
40	GO:0050378: UDP-glucuronate 4-epimerase activity	1.37E-03
41	GO:0050660: flavin adenine dinucleotide binding	1.40E-03
42	GO:0009922: fatty acid elongase activity	1.74E-03
43	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.92E-03
44	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	2.14E-03
45	GO:1990714: hydroxyproline O-galactosyltransferase activity	2.14E-03
46	GO:0004629: phospholipase C activity	2.14E-03
47	GO:0035673: oligopeptide transmembrane transporter activity	2.14E-03
48	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	2.14E-03
49	GO:0005242: inward rectifier potassium channel activity	2.57E-03
50	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.57E-03
51	GO:0051753: mannan synthase activity	2.57E-03
52	GO:0004435: phosphatidylinositol phospholipase C activity	2.57E-03
53	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.66E-03
54	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.24E-03
55	GO:0030247: polysaccharide binding	3.24E-03
56	GO:0030674: protein binding, bridging	3.51E-03
57	GO:0052747: sinapyl alcohol dehydrogenase activity	3.51E-03
58	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	4.02E-03
59	GO:0016207: 4-coumarate-CoA ligase activity	4.54E-03
60	GO:0008289: lipid binding	4.67E-03
61	GO:0015112: nitrate transmembrane transporter activity	5.10E-03
62	GO:0004568: chitinase activity	5.67E-03
63	GO:0003824: catalytic activity	6.63E-03
64	GO:0045551: cinnamyl-alcohol dehydrogenase activity	6.89E-03
65	GO:0015198: oligopeptide transporter activity	6.89E-03
66	GO:0051287: NAD binding	7.08E-03
67	GO:0015114: phosphate ion transmembrane transporter activity	7.52E-03
68	GO:0004022: alcohol dehydrogenase (NAD) activity	7.52E-03
69	GO:0008266: poly(U) RNA binding	8.19E-03
70	GO:0008146: sulfotransferase activity	8.87E-03
71	GO:0016491: oxidoreductase activity	9.10E-03
72	GO:0005528: FK506 binding	1.03E-02
73	GO:0004871: signal transducer activity	1.05E-02
74	GO:0022891: substrate-specific transmembrane transporter activity	1.34E-02
75	GO:0030570: pectate lyase activity	1.34E-02
76	GO:0008810: cellulase activity	1.34E-02
77	GO:0019843: rRNA binding	1.41E-02
78	GO:0008514: organic anion transmembrane transporter activity	1.42E-02
79	GO:0005249: voltage-gated potassium channel activity	1.59E-02
80	GO:0030551: cyclic nucleotide binding	1.59E-02
81	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.67E-02
82	GO:0050662: coenzyme binding	1.76E-02
83	GO:0004872: receptor activity	1.85E-02
84	GO:0016791: phosphatase activity	2.23E-02
85	GO:0005200: structural constituent of cytoskeleton	2.33E-02
86	GO:0016722: oxidoreductase activity, oxidizing metal ions	2.33E-02
87	GO:0016597: amino acid binding	2.42E-02
88	GO:0042802: identical protein binding	2.48E-02
89	GO:0015250: water channel activity	2.53E-02
90	GO:0016168: chlorophyll binding	2.63E-02
91	GO:0008375: acetylglucosaminyltransferase activity	2.73E-02
92	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.05E-02
93	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	3.27E-02
94	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.38E-02
95	GO:0003993: acid phosphatase activity	3.73E-02
96	GO:0030246: carbohydrate binding	3.84E-02
97	GO:0050661: NADP binding	3.96E-02
98	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.82E-02

Rank	GO Term	Adjusted P value
1	GO:0010240: plastid pyruvate dehydrogenase complex	0.00E+00
2	GO:0009515: granal stacked thylakoid	0.00E+00
3	GO:0009535: chloroplast thylakoid membrane	2.28E-09
4	GO:0009579: thylakoid	1.88E-06
5	GO:0048046: apoplast	2.57E-06
6	GO:0009534: chloroplast thylakoid	1.74E-05
7	GO:0005886: plasma membrane	2.23E-05
8	GO:0016021: integral component of membrane	7.14E-05
9	GO:0009507: chloroplast	1.30E-04
10	GO:0031225: anchored component of membrane	2.22E-04
11	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.45E-04
12	GO:0009543: chloroplast thylakoid lumen	3.54E-04
13	GO:0030095: chloroplast photosystem II	5.82E-04
14	GO:0010007: magnesium chelatase complex	7.22E-04
15	GO:0046658: anchored component of plasma membrane	8.95E-04
16	GO:0015630: microtubule cytoskeleton	1.03E-03
17	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	2.14E-03
18	GO:0009505: plant-type cell wall	2.43E-03
19	GO:0005618: cell wall	2.98E-03
20	GO:0009986: cell surface	3.03E-03
21	GO:0005789: endoplasmic reticulum membrane	3.59E-03
22	GO:0009570: chloroplast stroma	3.75E-03
23	GO:0016020: membrane	3.94E-03
24	GO:0009941: chloroplast envelope	4.47E-03
25	GO:0008180: COP9 signalosome	4.54E-03
26	GO:0031977: thylakoid lumen	5.39E-03
27	GO:0005576: extracellular region	5.80E-03
28	GO:0009654: photosystem II oxygen evolving complex	1.10E-02
29	GO:0005783: endoplasmic reticulum	1.12E-02
30	GO:0010287: plastoglobule	1.34E-02
31	GO:0009523: photosystem II	1.85E-02
32	GO:0019898: extrinsic component of membrane	1.85E-02
33	GO:0005887: integral component of plasma membrane	1.90E-02
34	GO:0005794: Golgi apparatus	2.08E-02
35	GO:0009506: plasmodesma	2.14E-02
36	GO:0032580: Golgi cisterna membrane	2.23E-02
37	GO:0010319: stromule	2.33E-02
38	GO:0019005: SCF ubiquitin ligase complex	3.05E-02
39	GO:0000151: ubiquitin ligase complex	3.05E-02
40	GO:0005777: peroxisome	3.16E-02
41	GO:0031969: chloroplast membrane	3.74E-02