Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G01480

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0042493: response to drug0.00E+00
2GO:0042371: vitamin K biosynthetic process0.00E+00
3GO:0006399: tRNA metabolic process0.00E+00
4GO:0006437: tyrosyl-tRNA aminoacylation0.00E+00
5GO:0070125: mitochondrial translational elongation0.00E+00
6GO:0002184: cytoplasmic translational termination0.00E+00
7GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
8GO:0045176: apical protein localization0.00E+00
9GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
10GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
11GO:0016553: base conversion or substitution editing0.00E+00
12GO:0033494: ferulate metabolic process0.00E+00
13GO:0015805: S-adenosyl-L-methionine transport0.00E+00
14GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
15GO:0042407: cristae formation0.00E+00
16GO:0007638: mechanosensory behavior0.00E+00
17GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
18GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
19GO:0006412: translation2.30E-16
20GO:0032544: plastid translation7.03E-13
21GO:0042254: ribosome biogenesis1.83E-10
22GO:0015979: photosynthesis1.41E-09
23GO:0009658: chloroplast organization2.30E-09
24GO:0010027: thylakoid membrane organization1.51E-06
25GO:0015976: carbon utilization2.12E-06
26GO:0009735: response to cytokinin3.77E-05
27GO:0015995: chlorophyll biosynthetic process3.90E-05
28GO:0090391: granum assembly4.36E-05
29GO:0006518: peptide metabolic process4.36E-05
30GO:0009773: photosynthetic electron transport in photosystem I1.37E-04
31GO:0010037: response to carbon dioxide1.60E-04
32GO:2000122: negative regulation of stomatal complex development1.60E-04
33GO:0010190: cytochrome b6f complex assembly3.43E-04
34GO:1901259: chloroplast rRNA processing4.58E-04
35GO:0042372: phylloquinone biosynthetic process4.58E-04
36GO:0000481: maturation of 5S rRNA5.46E-04
37GO:1904964: positive regulation of phytol biosynthetic process5.46E-04
38GO:0034337: RNA folding5.46E-04
39GO:0071588: hydrogen peroxide mediated signaling pathway5.46E-04
40GO:0010729: positive regulation of hydrogen peroxide biosynthetic process5.46E-04
41GO:0060627: regulation of vesicle-mediated transport5.46E-04
42GO:0043489: RNA stabilization5.46E-04
43GO:1904966: positive regulation of vitamin E biosynthetic process5.46E-04
44GO:0010196: nonphotochemical quenching5.86E-04
45GO:0006353: DNA-templated transcription, termination7.29E-04
46GO:0071482: cellular response to light stimulus8.88E-04
47GO:0034755: iron ion transmembrane transport1.17E-03
48GO:0006423: cysteinyl-tRNA aminoacylation1.17E-03
49GO:0006568: tryptophan metabolic process1.17E-03
50GO:0010024: phytochromobilin biosynthetic process1.17E-03
51GO:0010270: photosystem II oxygen evolving complex assembly1.17E-03
52GO:0043039: tRNA aminoacylation1.17E-03
53GO:0006695: cholesterol biosynthetic process1.17E-03
54GO:1902326: positive regulation of chlorophyll biosynthetic process1.17E-03
55GO:0006779: porphyrin-containing compound biosynthetic process1.25E-03
56GO:0006782: protoporphyrinogen IX biosynthetic process1.46E-03
57GO:0006415: translational termination1.69E-03
58GO:0006816: calcium ion transport1.69E-03
59GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.93E-03
60GO:0006954: inflammatory response1.93E-03
61GO:0006788: heme oxidation1.93E-03
62GO:0009793: embryo development ending in seed dormancy2.20E-03
63GO:0010207: photosystem II assembly2.48E-03
64GO:0010020: chloroplast fission2.48E-03
65GO:0006228: UTP biosynthetic process2.80E-03
66GO:0031048: chromatin silencing by small RNA2.80E-03
67GO:0010088: phloem development2.80E-03
68GO:0043572: plastid fission2.80E-03
69GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis2.80E-03
70GO:2001141: regulation of RNA biosynthetic process2.80E-03
71GO:0007231: osmosensory signaling pathway2.80E-03
72GO:0010239: chloroplast mRNA processing2.80E-03
73GO:0009650: UV protection2.80E-03
74GO:0006241: CTP biosynthetic process2.80E-03
75GO:0019048: modulation by virus of host morphology or physiology2.80E-03
76GO:0006424: glutamyl-tRNA aminoacylation2.80E-03
77GO:0046739: transport of virus in multicellular host2.80E-03
78GO:0006165: nucleoside diphosphate phosphorylation2.80E-03
79GO:0051567: histone H3-K9 methylation3.76E-03
80GO:0006808: regulation of nitrogen utilization3.76E-03
81GO:0009765: photosynthesis, light harvesting3.76E-03
82GO:0006183: GTP biosynthetic process3.76E-03
83GO:0033500: carbohydrate homeostasis3.76E-03
84GO:0015994: chlorophyll metabolic process3.76E-03
85GO:0042991: transcription factor import into nucleus3.76E-03
86GO:0006418: tRNA aminoacylation for protein translation3.81E-03
87GO:0006810: transport4.06E-03
88GO:0061077: chaperone-mediated protein folding4.19E-03
89GO:0048359: mucilage metabolic process involved in seed coat development4.83E-03
90GO:0006564: L-serine biosynthetic process4.83E-03
91GO:0016120: carotene biosynthetic process4.83E-03
92GO:0010236: plastoquinone biosynthetic process4.83E-03
93GO:0045038: protein import into chloroplast thylakoid membrane4.83E-03
94GO:0031365: N-terminal protein amino acid modification4.83E-03
95GO:0016123: xanthophyll biosynthetic process4.83E-03
96GO:0032543: mitochondrial translation4.83E-03
97GO:0009411: response to UV5.01E-03
98GO:0045454: cell redox homeostasis5.88E-03
99GO:0016117: carotenoid biosynthetic process5.92E-03
100GO:0032973: amino acid export5.99E-03
101GO:0016458: gene silencing5.99E-03
102GO:0006014: D-ribose metabolic process5.99E-03
103GO:0048827: phyllome development5.99E-03
104GO:0042549: photosystem II stabilization5.99E-03
105GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway5.99E-03
106GO:0000470: maturation of LSU-rRNA5.99E-03
107GO:0016554: cytidine to uridine editing5.99E-03
108GO:0006828: manganese ion transport5.99E-03
109GO:0042335: cuticle development6.40E-03
110GO:0000413: protein peptidyl-prolyl isomerization6.40E-03
111GO:0006869: lipid transport6.91E-03
112GO:0009854: oxidative photosynthetic carbon pathway7.24E-03
113GO:0010019: chloroplast-nucleus signaling pathway7.24E-03
114GO:0010555: response to mannitol7.24E-03
115GO:0009955: adaxial/abaxial pattern specification7.24E-03
116GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)7.24E-03
117GO:0006694: steroid biosynthetic process7.24E-03
118GO:0048825: cotyledon development7.97E-03
119GO:0006400: tRNA modification8.57E-03
120GO:0009772: photosynthetic electron transport in photosystem II8.57E-03
121GO:0043090: amino acid import8.57E-03
122GO:0006614: SRP-dependent cotranslational protein targeting to membrane8.57E-03
123GO:0032508: DNA duplex unwinding9.98E-03
124GO:0042255: ribosome assembly9.98E-03
125GO:0000028: ribosomal small subunit assembly9.98E-03
126GO:0048564: photosystem I assembly9.98E-03
127GO:0030091: protein repair9.98E-03
128GO:0009642: response to light intensity9.98E-03
129GO:0042742: defense response to bacterium1.14E-02
130GO:0017004: cytochrome complex assembly1.15E-02
131GO:0009808: lignin metabolic process1.15E-02
132GO:0009932: cell tip growth1.15E-02
133GO:0010497: plasmodesmata-mediated intercellular transport1.15E-02
134GO:0009657: plastid organization1.15E-02
135GO:0006783: heme biosynthetic process1.30E-02
136GO:0015780: nucleotide-sugar transport1.30E-02
137GO:0010206: photosystem II repair1.30E-02
138GO:0080144: amino acid homeostasis1.30E-02
139GO:0045337: farnesyl diphosphate biosynthetic process1.30E-02
140GO:0033384: geranyl diphosphate biosynthetic process1.30E-02
141GO:0043067: regulation of programmed cell death1.47E-02
142GO:0042761: very long-chain fatty acid biosynthetic process1.47E-02
143GO:1900865: chloroplast RNA modification1.47E-02
144GO:0018298: protein-chromophore linkage1.62E-02
145GO:0009817: defense response to fungus, incompatible interaction1.62E-02
146GO:0030422: production of siRNA involved in RNA interference1.64E-02
147GO:0045036: protein targeting to chloroplast1.64E-02
148GO:0006949: syncytium formation1.64E-02
149GO:0009870: defense response signaling pathway, resistance gene-dependent1.64E-02
150GO:0006352: DNA-templated transcription, initiation1.82E-02
151GO:0019684: photosynthesis, light reaction1.82E-02
152GO:0009089: lysine biosynthetic process via diaminopimelate1.82E-02
153GO:0009073: aromatic amino acid family biosynthetic process1.82E-02
154GO:0043085: positive regulation of catalytic activity1.82E-02
155GO:0006879: cellular iron ion homeostasis1.82E-02
156GO:0009631: cold acclimation1.88E-02
157GO:0010119: regulation of stomatal movement1.88E-02
158GO:0009790: embryo development1.89E-02
159GO:0045037: protein import into chloroplast stroma2.00E-02
160GO:0009637: response to blue light2.06E-02
161GO:0009409: response to cold2.16E-02
162GO:0034599: cellular response to oxidative stress2.16E-02
163GO:0006006: glucose metabolic process2.19E-02
164GO:0010229: inflorescence development2.19E-02
165GO:0009725: response to hormone2.19E-02
166GO:0009416: response to light stimulus2.28E-02
167GO:0019253: reductive pentose-phosphate cycle2.39E-02
168GO:0010540: basipetal auxin transport2.39E-02
169GO:0010143: cutin biosynthetic process2.39E-02
170GO:0009451: RNA modification2.40E-02
171GO:0070588: calcium ion transmembrane transport2.59E-02
172GO:0016042: lipid catabolic process2.65E-02
173GO:0010114: response to red light2.66E-02
174GO:0006833: water transport2.80E-02
175GO:0019762: glucosinolate catabolic process2.80E-02
176GO:0010025: wax biosynthetic process2.80E-02
177GO:0007010: cytoskeleton organization3.01E-02
178GO:0019344: cysteine biosynthetic process3.01E-02
179GO:0000027: ribosomal large subunit assembly3.01E-02
180GO:0009768: photosynthesis, light harvesting in photosystem I3.23E-02
181GO:0042538: hyperosmotic salinity response3.34E-02
182GO:0006306: DNA methylation3.46E-02
183GO:0006457: protein folding3.51E-02
184GO:0006813: potassium ion transport3.59E-02
185GO:0080092: regulation of pollen tube growth3.69E-02
186GO:0030245: cellulose catabolic process3.69E-02
187GO:0016226: iron-sulfur cluster assembly3.69E-02
188GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.92E-02
189GO:0019722: calcium-mediated signaling4.17E-02
190GO:0009306: protein secretion4.17E-02
191GO:0008033: tRNA processing4.66E-02
192GO:0034220: ion transmembrane transport4.66E-02
193GO:0055114: oxidation-reduction process4.83E-02
194GO:0006662: glycerol ether metabolic process4.91E-02
195GO:0010197: polar nucleus fusion4.91E-02
196GO:0006342: chromatin silencing4.91E-02
RankGO TermAdjusted P value
1GO:0045435: lycopene epsilon cyclase activity0.00E+00
2GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
3GO:0004822: isoleucine-tRNA ligase activity0.00E+00
4GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
5GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
6GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
7GO:0005048: signal sequence binding0.00E+00
8GO:0050614: delta24-sterol reductase activity0.00E+00
9GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
10GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
11GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
12GO:0008887: glycerate kinase activity0.00E+00
13GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
14GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
15GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
16GO:0019843: rRNA binding1.72E-29
17GO:0003735: structural constituent of ribosome2.13E-19
18GO:0003755: peptidyl-prolyl cis-trans isomerase activity8.52E-12
19GO:0005528: FK506 binding4.01E-10
20GO:0051920: peroxiredoxin activity1.50E-05
21GO:0016209: antioxidant activity3.45E-05
22GO:0016149: translation release factor activity, codon specific9.29E-05
23GO:0004659: prenyltransferase activity1.60E-04
24GO:0004089: carbonate dehydratase activity2.02E-04
25GO:0004222: metalloendopeptidase activity5.03E-04
26GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity5.46E-04
27GO:0004425: indole-3-glycerol-phosphate synthase activity5.46E-04
28GO:0004831: tyrosine-tRNA ligase activity5.46E-04
29GO:0004655: porphobilinogen synthase activity5.46E-04
30GO:0016788: hydrolase activity, acting on ester bonds7.73E-04
31GO:0003747: translation release factor activity1.06E-03
32GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity1.17E-03
33GO:0047746: chlorophyllase activity1.17E-03
34GO:0004617: phosphoglycerate dehydrogenase activity1.17E-03
35GO:0004817: cysteine-tRNA ligase activity1.17E-03
36GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.17E-03
37GO:0016630: protochlorophyllide reductase activity1.17E-03
38GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase1.17E-03
39GO:0030267: glyoxylate reductase (NADP) activity1.93E-03
40GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.93E-03
41GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity1.93E-03
42GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity1.93E-03
43GO:0017150: tRNA dihydrouridine synthase activity1.93E-03
44GO:0050734: hydroxycinnamoyltransferase activity1.93E-03
45GO:0002161: aminoacyl-tRNA editing activity1.93E-03
46GO:0004148: dihydrolipoyl dehydrogenase activity1.93E-03
47GO:0031072: heat shock protein binding2.20E-03
48GO:0008266: poly(U) RNA binding2.48E-03
49GO:0004550: nucleoside diphosphate kinase activity2.80E-03
50GO:0035197: siRNA binding2.80E-03
51GO:0016851: magnesium chelatase activity2.80E-03
52GO:0043023: ribosomal large subunit binding2.80E-03
53GO:0008097: 5S rRNA binding2.80E-03
54GO:0001872: (1->3)-beta-D-glucan binding2.80E-03
55GO:0004392: heme oxygenase (decyclizing) activity3.76E-03
56GO:0043495: protein anchor3.76E-03
57GO:0001053: plastid sigma factor activity3.76E-03
58GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed3.76E-03
59GO:0016987: sigma factor activity3.76E-03
60GO:0008289: lipid binding4.76E-03
61GO:0004040: amidase activity4.83E-03
62GO:0003959: NADPH dehydrogenase activity4.83E-03
63GO:0016773: phosphotransferase activity, alcohol group as acceptor4.83E-03
64GO:0030570: pectate lyase activity5.01E-03
65GO:0052689: carboxylic ester hydrolase activity5.11E-03
66GO:0051537: 2 iron, 2 sulfur cluster binding5.59E-03
67GO:0004812: aminoacyl-tRNA ligase activity5.92E-03
68GO:0008200: ion channel inhibitor activity5.99E-03
69GO:0016208: AMP binding5.99E-03
70GO:0004130: cytochrome-c peroxidase activity5.99E-03
71GO:0016688: L-ascorbate peroxidase activity5.99E-03
72GO:0004723: calcium-dependent protein serine/threonine phosphatase activity7.24E-03
73GO:0051753: mannan synthase activity7.24E-03
74GO:0033743: peptide-methionine (R)-S-oxide reductase activity7.24E-03
75GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity7.24E-03
76GO:0004747: ribokinase activity7.24E-03
77GO:0042802: identical protein binding8.28E-03
78GO:0008235: metalloexopeptidase activity8.57E-03
79GO:0019899: enzyme binding8.57E-03
80GO:0003723: RNA binding8.77E-03
81GO:0005509: calcium ion binding9.62E-03
82GO:0004033: aldo-keto reductase (NADP) activity9.98E-03
83GO:0008865: fructokinase activity9.98E-03
84GO:0008312: 7S RNA binding9.98E-03
85GO:0052747: sinapyl alcohol dehydrogenase activity9.98E-03
86GO:0008237: metallopeptidase activity1.10E-02
87GO:0016722: oxidoreductase activity, oxidizing metal ions1.10E-02
88GO:0004337: geranyltranstransferase activity1.30E-02
89GO:0016168: chlorophyll binding1.31E-02
90GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.32E-02
91GO:0047617: acyl-CoA hydrolase activity1.47E-02
92GO:0005384: manganese ion transmembrane transporter activity1.47E-02
93GO:0005381: iron ion transmembrane transporter activity1.47E-02
94GO:0008236: serine-type peptidase activity1.54E-02
95GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity1.62E-02
96GO:0008047: enzyme activator activity1.64E-02
97GO:0004177: aminopeptidase activity1.82E-02
98GO:0004161: dimethylallyltranstransferase activity1.82E-02
99GO:0005089: Rho guanyl-nucleotide exchange factor activity1.82E-02
100GO:0000049: tRNA binding2.00E-02
101GO:0045551: cinnamyl-alcohol dehydrogenase activity2.00E-02
102GO:0004521: endoribonuclease activity2.00E-02
103GO:0003746: translation elongation factor activity2.06E-02
104GO:0004871: signal transducer activity2.17E-02
105GO:0015095: magnesium ion transmembrane transporter activity2.19E-02
106GO:0005262: calcium channel activity2.19E-02
107GO:0008081: phosphoric diester hydrolase activity2.19E-02
108GO:0008017: microtubule binding2.47E-02
109GO:0003729: mRNA binding2.62E-02
110GO:0003924: GTPase activity2.77E-02
111GO:0031409: pigment binding2.80E-02
112GO:0043621: protein self-association2.88E-02
113GO:0051536: iron-sulfur cluster binding3.01E-02
114GO:0051287: NAD binding3.23E-02
115GO:0015079: potassium ion transmembrane transporter activity3.23E-02
116GO:0008324: cation transmembrane transporter activity3.23E-02
117GO:0004176: ATP-dependent peptidase activity3.46E-02
118GO:0022891: substrate-specific transmembrane transporter activity3.92E-02
119GO:0008810: cellulase activity3.92E-02
120GO:0003777: microtubule motor activity3.97E-02
121GO:0004601: peroxidase activity4.02E-02
122GO:0003727: single-stranded RNA binding4.17E-02
123GO:0008514: organic anion transmembrane transporter activity4.17E-02
124GO:0047134: protein-disulfide reductase activity4.41E-02
125GO:0008080: N-acetyltransferase activity4.91E-02
RankGO TermAdjusted P value
1GO:0044391: ribosomal subunit0.00E+00
2GO:0009547: plastid ribosome0.00E+00
3GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex0.00E+00
4GO:0009515: granal stacked thylakoid0.00E+00
5GO:0009507: chloroplast1.92E-82
6GO:0009570: chloroplast stroma3.83E-57
7GO:0009941: chloroplast envelope2.71E-49
8GO:0009535: chloroplast thylakoid membrane1.33E-36
9GO:0009579: thylakoid5.32E-27
10GO:0009543: chloroplast thylakoid lumen3.70E-26
11GO:0005840: ribosome8.63E-19
12GO:0031977: thylakoid lumen9.60E-19
13GO:0009534: chloroplast thylakoid8.40E-14
14GO:0009654: photosystem II oxygen evolving complex3.03E-08
15GO:0019898: extrinsic component of membrane3.69E-07
16GO:0048046: apoplast7.71E-06
17GO:0031969: chloroplast membrane8.13E-06
18GO:0046658: anchored component of plasma membrane1.64E-05
19GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)6.56E-05
20GO:0000311: plastid large ribosomal subunit1.68E-04
21GO:0000312: plastid small ribosomal subunit2.40E-04
22GO:0030095: chloroplast photosystem II2.40E-04
23GO:0042651: thylakoid membrane4.30E-04
24GO:0015934: large ribosomal subunit5.41E-04
25GO:0016020: membrane6.40E-04
26GO:0080085: signal recognition particle, chloroplast targeting1.17E-03
27GO:0010319: stromule1.65E-03
28GO:0010007: magnesium chelatase complex1.93E-03
29GO:0031225: anchored component of membrane2.27E-03
30GO:0009536: plastid2.56E-03
31GO:0009505: plant-type cell wall2.70E-03
32GO:0005719: nuclear euchromatin2.80E-03
33GO:0005875: microtubule associated complex3.11E-03
34GO:0005874: microtubule4.03E-03
35GO:0015935: small ribosomal subunit4.19E-03
36GO:0000793: condensed chromosome5.99E-03
37GO:0009523: photosystem II7.97E-03
38GO:0000794: condensed nuclear chromosome8.57E-03
39GO:0009533: chloroplast stromal thylakoid8.57E-03
40GO:0005786: signal recognition particle, endoplasmic reticulum targeting1.15E-02
41GO:0009706: chloroplast inner membrane1.16E-02
42GO:0030529: intracellular ribonucleoprotein complex1.24E-02
43GO:0005763: mitochondrial small ribosomal subunit1.30E-02
44GO:0015030: Cajal body1.47E-02
45GO:0016324: apical plasma membrane1.64E-02
46GO:0022625: cytosolic large ribosomal subunit1.67E-02
47GO:0032040: small-subunit processome2.00E-02
48GO:0022626: cytosolic ribosome2.11E-02
49GO:0031012: extracellular matrix2.19E-02
50GO:0005618: cell wall2.21E-02
51GO:0030076: light-harvesting complex2.59E-02
52GO:0022627: cytosolic small ribosomal subunit3.31E-02
53GO:0009532: plastid stroma3.46E-02
54GO:0005871: kinesin complex4.41E-02
55GO:0005770: late endosome4.91E-02
Gene type



Gene DE type