GO Enrichment Analysis of Co-expressed Genes with
AT3G01440
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042407: cristae formation | 0.00E+00 |
| 2 | GO:0005996: monosaccharide metabolic process | 0.00E+00 |
| 3 | GO:0070272: proton-transporting ATP synthase complex biogenesis | 0.00E+00 |
| 4 | GO:0009106: lipoate metabolic process | 0.00E+00 |
| 5 | GO:0009946: proximal/distal axis specification | 0.00E+00 |
| 6 | GO:0051881: regulation of mitochondrial membrane potential | 0.00E+00 |
| 7 | GO:0043697: cell dedifferentiation | 0.00E+00 |
| 8 | GO:0009249: protein lipoylation | 0.00E+00 |
| 9 | GO:0060184: cell cycle switching | 0.00E+00 |
| 10 | GO:0009301: snRNA transcription | 0.00E+00 |
| 11 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 1.22E-06 |
| 12 | GO:0019253: reductive pentose-phosphate cycle | 1.56E-05 |
| 13 | GO:0006546: glycine catabolic process | 1.97E-05 |
| 14 | GO:0019464: glycine decarboxylation via glycine cleavage system | 1.97E-05 |
| 15 | GO:0016117: carotenoid biosynthetic process | 6.40E-05 |
| 16 | GO:0042026: protein refolding | 6.70E-05 |
| 17 | GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process | 1.58E-04 |
| 18 | GO:1901349: glucosinolate transport | 1.58E-04 |
| 19 | GO:0006438: valyl-tRNA aminoacylation | 1.58E-04 |
| 20 | GO:0090449: phloem glucosinolate loading | 1.58E-04 |
| 21 | GO:0003002: regionalization | 1.58E-04 |
| 22 | GO:0000272: polysaccharide catabolic process | 2.91E-04 |
| 23 | GO:0006633: fatty acid biosynthetic process | 3.10E-04 |
| 24 | GO:0009945: radial axis specification | 3.60E-04 |
| 25 | GO:0006423: cysteinyl-tRNA aminoacylation | 3.60E-04 |
| 26 | GO:0080183: response to photooxidative stress | 3.60E-04 |
| 27 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 3.60E-04 |
| 28 | GO:2000123: positive regulation of stomatal complex development | 3.60E-04 |
| 29 | GO:0010020: chloroplast fission | 4.31E-04 |
| 30 | GO:2000082: regulation of L-ascorbic acid biosynthetic process | 5.89E-04 |
| 31 | GO:0006000: fructose metabolic process | 5.89E-04 |
| 32 | GO:0006696: ergosterol biosynthetic process | 5.89E-04 |
| 33 | GO:0010338: leaf formation | 5.89E-04 |
| 34 | GO:0061077: chaperone-mediated protein folding | 7.18E-04 |
| 35 | GO:0009735: response to cytokinin | 8.10E-04 |
| 36 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 8.43E-04 |
| 37 | GO:0033014: tetrapyrrole biosynthetic process | 8.43E-04 |
| 38 | GO:2001141: regulation of RNA biosynthetic process | 8.43E-04 |
| 39 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 8.43E-04 |
| 40 | GO:0051085: chaperone mediated protein folding requiring cofactor | 8.43E-04 |
| 41 | GO:0010239: chloroplast mRNA processing | 8.43E-04 |
| 42 | GO:0006085: acetyl-CoA biosynthetic process | 1.12E-03 |
| 43 | GO:0045088: regulation of innate immune response | 1.12E-03 |
| 44 | GO:0045727: positive regulation of translation | 1.12E-03 |
| 45 | GO:2000038: regulation of stomatal complex development | 1.12E-03 |
| 46 | GO:0006542: glutamine biosynthetic process | 1.12E-03 |
| 47 | GO:0019676: ammonia assimilation cycle | 1.12E-03 |
| 48 | GO:0010375: stomatal complex patterning | 1.41E-03 |
| 49 | GO:0071368: cellular response to cytokinin stimulus | 1.41E-03 |
| 50 | GO:0010236: plastoquinone biosynthetic process | 1.41E-03 |
| 51 | GO:0009107: lipoate biosynthetic process | 1.41E-03 |
| 52 | GO:0016123: xanthophyll biosynthetic process | 1.41E-03 |
| 53 | GO:0009409: response to cold | 1.51E-03 |
| 54 | GO:0007264: small GTPase mediated signal transduction | 1.51E-03 |
| 55 | GO:0010190: cytochrome b6f complex assembly | 1.74E-03 |
| 56 | GO:0006810: transport | 1.78E-03 |
| 57 | GO:0010014: meristem initiation | 2.09E-03 |
| 58 | GO:0006458: 'de novo' protein folding | 2.09E-03 |
| 59 | GO:0017148: negative regulation of translation | 2.09E-03 |
| 60 | GO:0009942: longitudinal axis specification | 2.09E-03 |
| 61 | GO:0006826: iron ion transport | 2.45E-03 |
| 62 | GO:0006880: intracellular sequestering of iron ion | 2.45E-03 |
| 63 | GO:0008610: lipid biosynthetic process | 2.84E-03 |
| 64 | GO:0010439: regulation of glucosinolate biosynthetic process | 2.84E-03 |
| 65 | GO:0048564: photosystem I assembly | 2.84E-03 |
| 66 | GO:0048193: Golgi vesicle transport | 3.25E-03 |
| 67 | GO:0042742: defense response to bacterium | 3.25E-03 |
| 68 | GO:0009657: plastid organization | 3.25E-03 |
| 69 | GO:0032544: plastid translation | 3.25E-03 |
| 70 | GO:0006002: fructose 6-phosphate metabolic process | 3.25E-03 |
| 71 | GO:0071482: cellular response to light stimulus | 3.25E-03 |
| 72 | GO:0022900: electron transport chain | 3.25E-03 |
| 73 | GO:0006075: (1->3)-beta-D-glucan biosynthetic process | 3.25E-03 |
| 74 | GO:0010206: photosystem II repair | 3.67E-03 |
| 75 | GO:0006783: heme biosynthetic process | 3.67E-03 |
| 76 | GO:0009658: chloroplast organization | 4.02E-03 |
| 77 | GO:0008356: asymmetric cell division | 4.12E-03 |
| 78 | GO:0043067: regulation of programmed cell death | 4.12E-03 |
| 79 | GO:0006779: porphyrin-containing compound biosynthetic process | 4.12E-03 |
| 80 | GO:0009744: response to sucrose | 4.29E-03 |
| 81 | GO:0051555: flavonol biosynthetic process | 4.58E-03 |
| 82 | GO:0009773: photosynthetic electron transport in photosystem I | 5.05E-03 |
| 83 | GO:0006415: translational termination | 5.05E-03 |
| 84 | GO:0006879: cellular iron ion homeostasis | 5.05E-03 |
| 85 | GO:0006352: DNA-templated transcription, initiation | 5.05E-03 |
| 86 | GO:0018119: peptidyl-cysteine S-nitrosylation | 5.05E-03 |
| 87 | GO:0045037: protein import into chloroplast stroma | 5.55E-03 |
| 88 | GO:0071365: cellular response to auxin stimulus | 5.55E-03 |
| 89 | GO:0006006: glucose metabolic process | 6.06E-03 |
| 90 | GO:0006094: gluconeogenesis | 6.06E-03 |
| 91 | GO:0009767: photosynthetic electron transport chain | 6.06E-03 |
| 92 | GO:0005986: sucrose biosynthetic process | 6.06E-03 |
| 93 | GO:0009887: animal organ morphogenesis | 6.59E-03 |
| 94 | GO:0046686: response to cadmium ion | 7.05E-03 |
| 95 | GO:0010039: response to iron ion | 7.13E-03 |
| 96 | GO:0006636: unsaturated fatty acid biosynthetic process | 7.69E-03 |
| 97 | GO:0009944: polarity specification of adaxial/abaxial axis | 8.27E-03 |
| 98 | GO:0006418: tRNA aminoacylation for protein translation | 8.86E-03 |
| 99 | GO:0008152: metabolic process | 9.81E-03 |
| 100 | GO:0006730: one-carbon metabolic process | 1.01E-02 |
| 101 | GO:0007005: mitochondrion organization | 1.01E-02 |
| 102 | GO:0080092: regulation of pollen tube growth | 1.01E-02 |
| 103 | GO:0009625: response to insect | 1.07E-02 |
| 104 | GO:0006284: base-excision repair | 1.14E-02 |
| 105 | GO:0009790: embryo development | 1.20E-02 |
| 106 | GO:0042631: cellular response to water deprivation | 1.27E-02 |
| 107 | GO:0008360: regulation of cell shape | 1.34E-02 |
| 108 | GO:0010197: polar nucleus fusion | 1.34E-02 |
| 109 | GO:0015986: ATP synthesis coupled proton transport | 1.41E-02 |
| 110 | GO:0007059: chromosome segregation | 1.41E-02 |
| 111 | GO:0019252: starch biosynthetic process | 1.48E-02 |
| 112 | GO:0055072: iron ion homeostasis | 1.48E-02 |
| 113 | GO:0048510: regulation of timing of transition from vegetative to reproductive phase | 1.56E-02 |
| 114 | GO:0000302: response to reactive oxygen species | 1.56E-02 |
| 115 | GO:0016125: sterol metabolic process | 1.78E-02 |
| 116 | GO:0009416: response to light stimulus | 1.79E-02 |
| 117 | GO:0009611: response to wounding | 1.84E-02 |
| 118 | GO:0010286: heat acclimation | 1.86E-02 |
| 119 | GO:0007267: cell-cell signaling | 1.86E-02 |
| 120 | GO:0051607: defense response to virus | 1.94E-02 |
| 121 | GO:0009615: response to virus | 2.02E-02 |
| 122 | GO:0009627: systemic acquired resistance | 2.19E-02 |
| 123 | GO:0009817: defense response to fungus, incompatible interaction | 2.44E-02 |
| 124 | GO:0018298: protein-chromophore linkage | 2.44E-02 |
| 125 | GO:0008219: cell death | 2.44E-02 |
| 126 | GO:0010311: lateral root formation | 2.53E-02 |
| 127 | GO:0009407: toxin catabolic process | 2.62E-02 |
| 128 | GO:0007568: aging | 2.71E-02 |
| 129 | GO:0080167: response to karrikin | 2.74E-02 |
| 130 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 2.83E-02 |
| 131 | GO:0016051: carbohydrate biosynthetic process | 2.89E-02 |
| 132 | GO:0009853: photorespiration | 2.89E-02 |
| 133 | GO:0034599: cellular response to oxidative stress | 2.98E-02 |
| 134 | GO:0015979: photosynthesis | 3.13E-02 |
| 135 | GO:0006839: mitochondrial transport | 3.17E-02 |
| 136 | GO:0006631: fatty acid metabolic process | 3.27E-02 |
| 137 | GO:0009926: auxin polar transport | 3.46E-02 |
| 138 | GO:0055114: oxidation-reduction process | 3.56E-02 |
| 139 | GO:0009636: response to toxic substance | 3.76E-02 |
| 140 | GO:0009965: leaf morphogenesis | 3.76E-02 |
| 141 | GO:0006281: DNA repair | 4.03E-02 |
| 142 | GO:0042538: hyperosmotic salinity response | 4.07E-02 |
| 143 | GO:0006364: rRNA processing | 4.28E-02 |
| 144 | GO:0009753: response to jasmonic acid | 4.32E-02 |
| 145 | GO:0006857: oligopeptide transport | 4.49E-02 |
| 146 | GO:0006096: glycolytic process | 4.82E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity | 0.00E+00 |
| 2 | GO:0046905: phytoene synthase activity | 0.00E+00 |
| 3 | GO:0008962: phosphatidylglycerophosphatase activity | 0.00E+00 |
| 4 | GO:0050278: sedoheptulose-bisphosphatase activity | 0.00E+00 |
| 5 | GO:0003858: 3-hydroxybutyrate dehydrogenase activity | 0.00E+00 |
| 6 | GO:0033819: lipoyl(octanoyl) transferase activity | 0.00E+00 |
| 7 | GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity | 0.00E+00 |
| 8 | GO:0009974: zeinoxanthin epsilon hydroxylase activity | 0.00E+00 |
| 9 | GO:0004375: glycine dehydrogenase (decarboxylating) activity | 1.06E-05 |
| 10 | GO:0004325: ferrochelatase activity | 1.58E-04 |
| 11 | GO:0051996: squalene synthase activity | 1.58E-04 |
| 12 | GO:0010313: phytochrome binding | 1.58E-04 |
| 13 | GO:0004832: valine-tRNA ligase activity | 1.58E-04 |
| 14 | GO:0090448: glucosinolate:proton symporter activity | 1.58E-04 |
| 15 | GO:0044183: protein binding involved in protein folding | 2.91E-04 |
| 16 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 3.60E-04 |
| 17 | GO:0004310: farnesyl-diphosphate farnesyltransferase activity | 3.60E-04 |
| 18 | GO:0010291: carotene beta-ring hydroxylase activity | 3.60E-04 |
| 19 | GO:0017118: lipoyltransferase activity | 3.60E-04 |
| 20 | GO:0042389: omega-3 fatty acid desaturase activity | 3.60E-04 |
| 21 | GO:0010297: heteropolysaccharide binding | 3.60E-04 |
| 22 | GO:0004326: tetrahydrofolylpolyglutamate synthase activity | 3.60E-04 |
| 23 | GO:0016415: octanoyltransferase activity | 3.60E-04 |
| 24 | GO:0004047: aminomethyltransferase activity | 3.60E-04 |
| 25 | GO:0004312: fatty acid synthase activity | 3.60E-04 |
| 26 | GO:0004817: cysteine-tRNA ligase activity | 3.60E-04 |
| 27 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 3.60E-04 |
| 28 | GO:0003913: DNA photolyase activity | 5.89E-04 |
| 29 | GO:0004148: dihydrolipoyl dehydrogenase activity | 5.89E-04 |
| 30 | GO:0004751: ribose-5-phosphate isomerase activity | 5.89E-04 |
| 31 | GO:0030267: glyoxylate reductase (NADP) activity | 5.89E-04 |
| 32 | GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity | 5.89E-04 |
| 33 | GO:0005528: FK506 binding | 5.95E-04 |
| 34 | GO:0048027: mRNA 5'-UTR binding | 8.43E-04 |
| 35 | GO:0016149: translation release factor activity, codon specific | 8.43E-04 |
| 36 | GO:0008199: ferric iron binding | 8.43E-04 |
| 37 | GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity | 8.43E-04 |
| 38 | GO:0004322: ferroxidase activity | 8.43E-04 |
| 39 | GO:0003878: ATP citrate synthase activity | 8.43E-04 |
| 40 | GO:0016987: sigma factor activity | 1.12E-03 |
| 41 | GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity | 1.12E-03 |
| 42 | GO:0001053: plastid sigma factor activity | 1.12E-03 |
| 43 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 1.12E-03 |
| 44 | GO:0051082: unfolded protein binding | 1.16E-03 |
| 45 | GO:0004356: glutamate-ammonia ligase activity | 1.41E-03 |
| 46 | GO:0008725: DNA-3-methyladenine glycosylase activity | 1.41E-03 |
| 47 | GO:0008374: O-acyltransferase activity | 1.41E-03 |
| 48 | GO:0102229: amylopectin maltohydrolase activity | 1.74E-03 |
| 49 | GO:0042578: phosphoric ester hydrolase activity | 1.74E-03 |
| 50 | GO:0080030: methyl indole-3-acetate esterase activity | 1.74E-03 |
| 51 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 2.09E-03 |
| 52 | GO:0016161: beta-amylase activity | 2.09E-03 |
| 53 | GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity | 2.09E-03 |
| 54 | GO:0009881: photoreceptor activity | 2.45E-03 |
| 55 | GO:0043295: glutathione binding | 2.45E-03 |
| 56 | GO:0004033: aldo-keto reductase (NADP) activity | 2.84E-03 |
| 57 | GO:0004714: transmembrane receptor protein tyrosine kinase activity | 2.84E-03 |
| 58 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 3.25E-03 |
| 59 | GO:0003843: 1,3-beta-D-glucan synthase activity | 3.25E-03 |
| 60 | GO:0003747: translation release factor activity | 3.67E-03 |
| 61 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 5.00E-03 |
| 62 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 5.05E-03 |
| 63 | GO:0051287: NAD binding | 5.19E-03 |
| 64 | GO:0031072: heat shock protein binding | 6.06E-03 |
| 65 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 7.04E-03 |
| 66 | GO:0022857: transmembrane transporter activity | 7.73E-03 |
| 67 | GO:0019843: rRNA binding | 1.03E-02 |
| 68 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 1.06E-02 |
| 69 | GO:0003756: protein disulfide isomerase activity | 1.14E-02 |
| 70 | GO:0004812: aminoacyl-tRNA ligase activity | 1.20E-02 |
| 71 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 1.34E-02 |
| 72 | GO:0050662: coenzyme binding | 1.41E-02 |
| 73 | GO:0003824: catalytic activity | 1.41E-02 |
| 74 | GO:0019901: protein kinase binding | 1.48E-02 |
| 75 | GO:0048038: quinone binding | 1.56E-02 |
| 76 | GO:0008194: UDP-glycosyltransferase activity | 1.59E-02 |
| 77 | GO:0004518: nuclease activity | 1.63E-02 |
| 78 | GO:0008483: transaminase activity | 1.86E-02 |
| 79 | GO:0016597: amino acid binding | 1.94E-02 |
| 80 | GO:0016740: transferase activity | 2.31E-02 |
| 81 | GO:0008236: serine-type peptidase activity | 2.36E-02 |
| 82 | GO:0016757: transferase activity, transferring glycosyl groups | 2.69E-02 |
| 83 | GO:0050897: cobalt ion binding | 2.71E-02 |
| 84 | GO:0050661: NADP binding | 3.17E-02 |
| 85 | GO:0004364: glutathione transferase activity | 3.36E-02 |
| 86 | GO:0051537: 2 iron, 2 sulfur cluster binding | 3.66E-02 |
| 87 | GO:0005198: structural molecule activity | 3.76E-02 |
| 88 | GO:0005506: iron ion binding | 4.23E-02 |
| 89 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 4.28E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 1.04E-23 |
| 2 | GO:0009570: chloroplast stroma | 6.86E-16 |
| 3 | GO:0009941: chloroplast envelope | 3.33E-15 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 2.17E-11 |
| 5 | GO:0009579: thylakoid | 5.05E-07 |
| 6 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 3.34E-06 |
| 7 | GO:0010319: stromule | 7.27E-06 |
| 8 | GO:0005960: glycine cleavage complex | 1.06E-05 |
| 9 | GO:0009543: chloroplast thylakoid lumen | 1.85E-05 |
| 10 | GO:0009344: nitrite reductase complex [NAD(P)H] | 1.58E-04 |
| 11 | GO:0042170: plastid membrane | 3.60E-04 |
| 12 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 3.60E-04 |
| 13 | GO:0009654: photosystem II oxygen evolving complex | 6.55E-04 |
| 14 | GO:0009346: citrate lyase complex | 8.43E-04 |
| 15 | GO:0031969: chloroplast membrane | 9.77E-04 |
| 16 | GO:0048046: apoplast | 1.14E-03 |
| 17 | GO:0055035: plastid thylakoid membrane | 1.41E-03 |
| 18 | GO:0010287: plastoglobule | 1.44E-03 |
| 19 | GO:0000793: condensed chromosome | 1.74E-03 |
| 20 | GO:0000148: 1,3-beta-D-glucan synthase complex | 3.25E-03 |
| 21 | GO:0009539: photosystem II reaction center | 3.25E-03 |
| 22 | GO:0031977: thylakoid lumen | 3.95E-03 |
| 23 | GO:0016324: apical plasma membrane | 4.58E-03 |
| 24 | GO:0005765: lysosomal membrane | 5.05E-03 |
| 25 | GO:0000311: plastid large ribosomal subunit | 5.55E-03 |
| 26 | GO:0009534: chloroplast thylakoid | 5.59E-03 |
| 27 | GO:0009508: plastid chromosome | 6.06E-03 |
| 28 | GO:0030095: chloroplast photosystem II | 6.59E-03 |
| 29 | GO:0009706: chloroplast inner membrane | 8.21E-03 |
| 30 | GO:0019898: extrinsic component of membrane | 1.48E-02 |
| 31 | GO:0022626: cytosolic ribosome | 1.70E-02 |
| 32 | GO:0009295: nucleoid | 1.86E-02 |
| 33 | GO:0005778: peroxisomal membrane | 1.86E-02 |
| 34 | GO:0009707: chloroplast outer membrane | 2.44E-02 |
| 35 | GO:0015934: large ribosomal subunit | 2.71E-02 |
| 36 | GO:0005819: spindle | 3.08E-02 |
| 37 | GO:0031902: late endosome membrane | 3.27E-02 |
| 38 | GO:0043231: intracellular membrane-bounded organelle | 4.44E-02 |
| 39 | GO:0005747: mitochondrial respiratory chain complex I | 4.93E-02 |