co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G01400

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0016236: macroautophagy	0.00E+00
2	GO:0033539: fatty acid beta-oxidation using acyl-CoA dehydrogenase	0.00E+00
3	GO:0045185: maintenance of protein location	0.00E+00
4	GO:0009991: response to extracellular stimulus	0.00E+00
5	GO:0006593: ornithine catabolic process	0.00E+00
6	GO:0010111: glyoxysome organization	0.00E+00
7	GO:0000244: spliceosomal tri-snRNP complex assembly	0.00E+00
8	GO:2001253: regulation of histone H3-K36 trimethylation	0.00E+00
9	GO:0010477: response to sulfur dioxide	0.00E+00
10	GO:0006480: N-terminal protein amino acid methylation	0.00E+00
11	GO:0048227: plasma membrane to endosome transport	0.00E+00
12	GO:0010793: regulation of mRNA export from nucleus	0.00E+00
13	GO:0070291: N-acylethanolamine metabolic process	0.00E+00
14	GO:0006014: D-ribose metabolic process	4.28E-05
15	GO:0006635: fatty acid beta-oxidation	9.67E-05
16	GO:0016559: peroxisome fission	1.04E-04
17	GO:0098702: adenine import across plasma membrane	1.48E-04
18	GO:0090421: embryonic meristem initiation	1.48E-04
19	GO:0035266: meristem growth	1.48E-04
20	GO:0098710: guanine import across plasma membrane	1.48E-04
21	GO:0007292: female gamete generation	1.48E-04
22	GO:0030242: pexophagy	1.48E-04
23	GO:0035344: hypoxanthine transport	1.48E-04
24	GO:0035494: SNARE complex disassembly	1.48E-04
25	GO:0019544: arginine catabolic process to glutamate	1.48E-04
26	GO:0098721: uracil import across plasma membrane	1.48E-04
27	GO:0000266: mitochondrial fission	3.05E-04
28	GO:0019395: fatty acid oxidation	3.38E-04
29	GO:0050684: regulation of mRNA processing	3.38E-04
30	GO:0006212: uracil catabolic process	3.38E-04
31	GO:0007584: response to nutrient	3.38E-04
32	GO:0051788: response to misfolded protein	3.38E-04
33	GO:0019483: beta-alanine biosynthetic process	3.38E-04
34	GO:0015865: purine nucleotide transport	3.38E-04
35	GO:0052542: defense response by callose deposition	3.38E-04
36	GO:0060968: regulation of gene silencing	5.54E-04
37	GO:0051646: mitochondrion localization	5.54E-04
38	GO:0032784: regulation of DNA-templated transcription, elongation	5.54E-04
39	GO:0061158: 3'-UTR-mediated mRNA destabilization	5.54E-04
40	GO:2001289: lipid X metabolic process	7.93E-04
41	GO:0046902: regulation of mitochondrial membrane permeability	7.93E-04
42	GO:0071786: endoplasmic reticulum tubular network organization	7.93E-04
43	GO:0006346: methylation-dependent chromatin silencing	1.05E-03
44	GO:0010222: stem vascular tissue pattern formation	1.05E-03
45	GO:0070534: protein K63-linked ubiquitination	1.05E-03
46	GO:0015994: chlorophyll metabolic process	1.05E-03
47	GO:0010107: potassium ion import	1.05E-03
48	GO:0045324: late endosome to vacuole transport	1.05E-03
49	GO:0019252: starch biosynthetic process	1.21E-03
50	GO:0006623: protein targeting to vacuole	1.21E-03
51	GO:0006511: ubiquitin-dependent protein catabolic process	1.36E-03
52	GO:0007264: small GTPase mediated signal transduction	1.37E-03
53	GO:0048364: root development	1.62E-03
54	GO:0006561: proline biosynthetic process	1.63E-03
55	GO:0006301: postreplication repair	1.63E-03
56	GO:0048827: phyllome development	1.63E-03
57	GO:0048232: male gamete generation	1.63E-03
58	GO:0043248: proteasome assembly	1.63E-03
59	GO:0042176: regulation of protein catabolic process	1.63E-03
60	GO:0010337: regulation of salicylic acid metabolic process	1.63E-03
61	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	1.63E-03
62	GO:0071470: cellular response to osmotic stress	1.96E-03
63	GO:0019509: L-methionine salvage from methylthioadenosine	1.96E-03
64	GO:0048280: vesicle fusion with Golgi apparatus	1.96E-03
65	GO:0006955: immune response	2.30E-03
66	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	2.30E-03
67	GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process	2.30E-03
68	GO:0006333: chromatin assembly or disassembly	2.30E-03
69	GO:0010311: lateral root formation	2.52E-03
70	GO:0006499: N-terminal protein myristoylation	2.65E-03
71	GO:0009787: regulation of abscisic acid-activated signaling pathway	2.66E-03
72	GO:0009819: drought recovery	2.66E-03
73	GO:0006605: protein targeting	2.66E-03
74	GO:0010078: maintenance of root meristem identity	2.66E-03
75	GO:0030968: endoplasmic reticulum unfolded protein response	3.04E-03
76	GO:0043562: cellular response to nitrogen levels	3.04E-03
77	GO:0009880: embryonic pattern specification	3.04E-03
78	GO:0001708: cell fate specification	3.44E-03
79	GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	3.44E-03
80	GO:2000280: regulation of root development	3.86E-03
81	GO:0008202: steroid metabolic process	3.86E-03
82	GO:0048829: root cap development	4.29E-03
83	GO:0006896: Golgi to vacuole transport	4.29E-03
84	GO:0006535: cysteine biosynthetic process from serine	4.29E-03
85	GO:0010015: root morphogenesis	4.73E-03
86	GO:0072593: reactive oxygen species metabolic process	4.73E-03
87	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	5.20E-03
88	GO:0006790: sulfur compound metabolic process	5.20E-03
89	GO:0055046: microgametogenesis	5.68E-03
90	GO:0006829: zinc II ion transport	5.68E-03
91	GO:0046686: response to cadmium ion	5.96E-03
92	GO:0009887: animal organ morphogenesis	6.17E-03
93	GO:0009933: meristem structural organization	6.17E-03
94	GO:0048367: shoot system development	6.40E-03
95	GO:0009626: plant-type hypersensitive response	6.61E-03
96	GO:0090351: seedling development	6.67E-03
97	GO:0010053: root epidermal cell differentiation	6.67E-03
98	GO:0010167: response to nitrate	6.67E-03
99	GO:0010039: response to iron ion	6.67E-03
100	GO:0071732: cellular response to nitric oxide	6.67E-03
101	GO:2000377: regulation of reactive oxygen species metabolic process	7.74E-03
102	GO:0019344: cysteine biosynthetic process	7.74E-03
103	GO:0009695: jasmonic acid biosynthetic process	8.29E-03
104	GO:0000398: mRNA splicing, via spliceosome	8.62E-03
105	GO:0031408: oxylipin biosynthetic process	8.85E-03
106	GO:0007005: mitochondrion organization	9.43E-03
107	GO:0080092: regulation of pollen tube growth	9.43E-03
108	GO:0030433: ubiquitin-dependent ERAD pathway	9.43E-03
109	GO:0071369: cellular response to ethylene stimulus	1.00E-02
110	GO:0009845: seed germination	1.01E-02
111	GO:0009561: megagametogenesis	1.06E-02
112	GO:0009306: protein secretion	1.06E-02
113	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.13E-02
114	GO:0042147: retrograde transport, endosome to Golgi	1.13E-02
115	GO:0070417: cellular response to cold	1.13E-02
116	GO:0006633: fatty acid biosynthetic process	1.18E-02
117	GO:0010118: stomatal movement	1.19E-02
118	GO:0071472: cellular response to salt stress	1.25E-02
119	GO:0010154: fruit development	1.25E-02
120	GO:0010150: leaf senescence	1.29E-02
121	GO:0061025: membrane fusion	1.32E-02
122	GO:0010183: pollen tube guidance	1.39E-02
123	GO:0009749: response to glucose	1.39E-02
124	GO:0006468: protein phosphorylation	1.44E-02
125	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.45E-02
126	GO:0006891: intra-Golgi vesicle-mediated transport	1.45E-02
127	GO:0006470: protein dephosphorylation	1.48E-02
128	GO:0009630: gravitropism	1.52E-02
129	GO:0071281: cellular response to iron ion	1.59E-02
130	GO:0006464: cellular protein modification process	1.67E-02
131	GO:0006914: autophagy	1.67E-02
132	GO:0035556: intracellular signal transduction	1.70E-02
133	GO:0006904: vesicle docking involved in exocytosis	1.74E-02
134	GO:0051607: defense response to virus	1.81E-02
135	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.97E-02
136	GO:0009816: defense response to bacterium, incompatible interaction	1.97E-02
137	GO:0042128: nitrate assimilation	2.04E-02
138	GO:0006888: ER to Golgi vesicle-mediated transport	2.12E-02
139	GO:0055085: transmembrane transport	2.15E-02
140	GO:0006970: response to osmotic stress	2.16E-02
141	GO:0008219: cell death	2.28E-02
142	GO:0009817: defense response to fungus, incompatible interaction	2.28E-02
143	GO:0006811: ion transport	2.45E-02
144	GO:0010043: response to zinc ion	2.53E-02
145	GO:0009910: negative regulation of flower development	2.53E-02
146	GO:0048527: lateral root development	2.53E-02
147	GO:0006865: amino acid transport	2.61E-02
148	GO:0046777: protein autophosphorylation	2.66E-02
149	GO:0009867: jasmonic acid mediated signaling pathway	2.70E-02
150	GO:0045087: innate immune response	2.70E-02
151	GO:0016051: carbohydrate biosynthetic process	2.70E-02
152	GO:0006099: tricarboxylic acid cycle	2.79E-02
153	GO:0006839: mitochondrial transport	2.96E-02
154	GO:0030001: metal ion transport	2.96E-02
155	GO:0045454: cell redox homeostasis	2.98E-02
156	GO:0006897: endocytosis	3.05E-02
157	GO:0006631: fatty acid metabolic process	3.05E-02
158	GO:0006886: intracellular protein transport	3.07E-02
159	GO:0006869: lipid transport	3.27E-02
160	GO:0000209: protein polyubiquitination	3.33E-02
161	GO:0009965: leaf morphogenesis	3.51E-02
162	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	3.71E-02
163	GO:0009846: pollen germination	3.80E-02
164	GO:0042538: hyperosmotic salinity response	3.80E-02
165	GO:0051603: proteolysis involved in cellular protein catabolic process	4.10E-02
166	GO:0006096: glycolytic process	4.50E-02

Rank	GO Term	Adjusted P value
1	GO:0008482: sulfite oxidase activity	0.00E+00
2	GO:0047412: N-(long-chain-acyl)ethanolamine deacylase activity	0.00E+00
3	GO:0046522: S-methyl-5-thioribose kinase activity	0.00E+00
4	GO:0004587: ornithine-oxo-acid transaminase activity	0.00E+00
5	GO:0017113: dihydropyrimidine dehydrogenase (NADP+) activity	0.00E+00
6	GO:0103073: anandamide amidohydrolase activity	0.00E+00
7	GO:0102077: oleamide hydrolase activity	0.00E+00
8	GO:0004747: ribokinase activity	6.00E-05
9	GO:0008865: fructokinase activity	1.04E-04
10	GO:0015208: guanine transmembrane transporter activity	1.48E-04
11	GO:0015294: solute:cation symporter activity	1.48E-04
12	GO:0015207: adenine transmembrane transporter activity	1.48E-04
13	GO:0019707: protein-cysteine S-acyltransferase activity	1.48E-04
14	GO:0016971: flavin-linked sulfhydryl oxidase activity	3.38E-04
15	GO:0001077: transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	3.38E-04
16	GO:0003988: acetyl-CoA C-acyltransferase activity	3.38E-04
17	GO:0005483: soluble NSF attachment protein activity	5.54E-04
18	GO:0005093: Rab GDP-dissociation inhibitor activity	5.54E-04
19	GO:0008430: selenium binding	5.54E-04
20	GO:0004180: carboxypeptidase activity	5.54E-04
21	GO:0005047: signal recognition particle binding	5.54E-04
22	GO:0019003: GDP binding	5.54E-04
23	GO:0004557: alpha-galactosidase activity	5.54E-04
24	GO:0004300: enoyl-CoA hydratase activity	7.93E-04
25	GO:0004108: citrate (Si)-synthase activity	7.93E-04
26	GO:0030527: structural constituent of chromatin	7.93E-04
27	GO:0019905: syntaxin binding	1.05E-03
28	GO:0015210: uracil transmembrane transporter activity	1.05E-03
29	GO:0016004: phospholipase activator activity	1.05E-03
30	GO:0005471: ATP:ADP antiporter activity	1.33E-03
31	GO:0030151: molybdenum ion binding	1.33E-03
32	GO:0004040: amidase activity	1.33E-03
33	GO:0003729: mRNA binding	1.51E-03
34	GO:0004029: aldehyde dehydrogenase (NAD) activity	1.63E-03
35	GO:0036402: proteasome-activating ATPase activity	1.63E-03
36	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	1.96E-03
37	GO:0004124: cysteine synthase activity	1.96E-03
38	GO:0102391: decanoate--CoA ligase activity	1.96E-03
39	GO:0003730: mRNA 3'-UTR binding	1.96E-03
40	GO:0008236: serine-type peptidase activity	2.29E-03
41	GO:0004467: long-chain fatty acid-CoA ligase activity	2.30E-03
42	GO:0008142: oxysterol binding	3.04E-03
43	GO:0005267: potassium channel activity	3.04E-03
44	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	3.44E-03
45	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	3.44E-03
46	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	3.44E-03
47	GO:0047617: acyl-CoA hydrolase activity	3.86E-03
48	GO:0030955: potassium ion binding	3.86E-03
49	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	3.86E-03
50	GO:0004743: pyruvate kinase activity	3.86E-03
51	GO:0005524: ATP binding	4.23E-03
52	GO:0030234: enzyme regulator activity	4.29E-03
53	GO:0004674: protein serine/threonine kinase activity	5.50E-03
54	GO:0003723: RNA binding	5.54E-03
55	GO:0017025: TBP-class protein binding	6.67E-03
56	GO:0004725: protein tyrosine phosphatase activity	7.20E-03
57	GO:0003924: GTPase activity	7.67E-03
58	GO:0019706: protein-cysteine S-palmitoyltransferase activity	8.85E-03
59	GO:0016779: nucleotidyltransferase activity	9.43E-03
60	GO:0030170: pyridoxal phosphate binding	1.04E-02
61	GO:0003727: single-stranded RNA binding	1.06E-02
62	GO:0003756: protein disulfide isomerase activity	1.06E-02
63	GO:0047134: protein-disulfide reductase activity	1.13E-02
64	GO:0046873: metal ion transmembrane transporter activity	1.25E-02
65	GO:0004791: thioredoxin-disulfide reductase activity	1.32E-02
66	GO:0016301: kinase activity	1.39E-02
67	GO:0004872: receptor activity	1.39E-02
68	GO:0000166: nucleotide binding	1.59E-02
69	GO:0042802: identical protein binding	1.65E-02
70	GO:0004842: ubiquitin-protein transferase activity	1.72E-02
71	GO:0009931: calcium-dependent protein serine/threonine kinase activity	2.04E-02
72	GO:0004683: calmodulin-dependent protein kinase activity	2.12E-02
73	GO:0050660: flavin adenine dinucleotide binding	2.32E-02
74	GO:0005096: GTPase activator activity	2.36E-02
75	GO:0061630: ubiquitin protein ligase activity	2.62E-02
76	GO:0005516: calmodulin binding	2.66E-02
77	GO:0003746: translation elongation factor activity	2.70E-02
78	GO:0000149: SNARE binding	2.87E-02
79	GO:0005525: GTP binding	2.97E-02
80	GO:0005484: SNAP receptor activity	3.23E-02
81	GO:0035091: phosphatidylinositol binding	3.42E-02
82	GO:0009055: electron carrier activity	3.93E-02
83	GO:0015171: amino acid transmembrane transporter activity	4.30E-02
84	GO:0008234: cysteine-type peptidase activity	4.30E-02
85	GO:0031625: ubiquitin protein ligase binding	4.30E-02
86	GO:0045735: nutrient reservoir activity	4.50E-02
87	GO:0022857: transmembrane transporter activity	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0005690: U4atac snRNP	0.00E+00
2	GO:0005785: signal recognition particle receptor complex	0.00E+00
3	GO:0005684: U2-type spliceosomal complex	0.00E+00
4	GO:0071561: nucleus-vacuole junction	0.00E+00
5	GO:0005777: peroxisome	3.17E-05
6	GO:0034271: phosphatidylinositol 3-kinase complex, class III, type I	1.48E-04
7	GO:0034272: phosphatidylinositol 3-kinase complex, class III, type II	1.48E-04
8	GO:0005829: cytosol	5.01E-04
9	GO:0005741: mitochondrial outer membrane	6.55E-04
10	GO:0000502: proteasome complex	6.67E-04
11	GO:0000323: lytic vacuole	7.93E-04
12	GO:0071782: endoplasmic reticulum tubular network	7.93E-04
13	GO:0031372: UBC13-MMS2 complex	1.05E-03
14	GO:0005770: late endosome	1.05E-03
15	GO:0005687: U4 snRNP	1.33E-03
16	GO:0097526: spliceosomal tri-snRNP complex	1.33E-03
17	GO:0005886: plasma membrane	1.35E-03
18	GO:0030140: trans-Golgi network transport vesicle	1.63E-03
19	GO:0005778: peroxisomal membrane	1.65E-03
20	GO:0005759: mitochondrial matrix	1.82E-03
21	GO:0031597: cytosolic proteasome complex	1.96E-03
22	GO:0030173: integral component of Golgi membrane	1.96E-03
23	GO:0005773: vacuole	2.22E-03
24	GO:0031595: nuclear proteasome complex	2.30E-03
25	GO:0012507: ER to Golgi transport vesicle membrane	2.66E-03
26	GO:0030131: clathrin adaptor complex	2.66E-03
27	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	2.66E-03
28	GO:0009514: glyoxysome	3.04E-03
29	GO:0046540: U4/U6 x U5 tri-snRNP complex	3.04E-03
30	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	3.04E-03
31	GO:0031201: SNARE complex	3.60E-03
32	GO:0071011: precatalytic spliceosome	3.86E-03
33	GO:0015030: Cajal body	3.86E-03
34	GO:0008540: proteasome regulatory particle, base subcomplex	3.86E-03
35	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	4.00E-03
36	GO:0005783: endoplasmic reticulum	4.26E-03
37	GO:0030125: clathrin vesicle coat	4.29E-03
38	GO:0005686: U2 snRNP	4.29E-03
39	GO:0008541: proteasome regulatory particle, lid subcomplex	4.73E-03
40	GO:0048471: perinuclear region of cytoplasm	4.73E-03
41	GO:0005789: endoplasmic reticulum membrane	5.76E-03
42	GO:0005794: Golgi apparatus	6.94E-03
43	GO:0005802: trans-Golgi network	7.42E-03
44	GO:0005905: clathrin-coated pit	8.85E-03
45	GO:0000785: chromatin	1.52E-02
46	GO:0005643: nuclear pore	2.28E-02
47	GO:0005774: vacuolar membrane	2.36E-02
48	GO:0005737: cytoplasm	2.51E-02
49	GO:0000325: plant-type vacuole	2.53E-02
50	GO:0000786: nucleosome	2.61E-02
51	GO:0031902: late endosome membrane	3.05E-02
52	GO:0005768: endosome	3.37E-02
53	GO:0016021: integral component of membrane	3.40E-02
54	GO:0043231: intracellular membrane-bounded organelle	4.04E-02
55	GO:0005834: heterotrimeric G-protein complex	4.71E-02