Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G01310

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0009877: nodulation0.00E+00
2GO:0043171: peptide catabolic process0.00E+00
3GO:0030644: cellular chloride ion homeostasis0.00E+00
4GO:0010219: regulation of vernalization response0.00E+00
5GO:0012502: induction of programmed cell death0.00E+00
6GO:0010378: temperature compensation of the circadian clock0.00E+00
7GO:0005997: xylulose metabolic process0.00E+00
8GO:1903508: positive regulation of nucleic acid-templated transcription0.00E+00
9GO:1903428: positive regulation of reactive oxygen species biosynthetic process0.00E+00
10GO:0071311: cellular response to acetate0.00E+00
11GO:0071260: cellular response to mechanical stimulus0.00E+00
12GO:0042906: xanthine transport0.00E+00
13GO:0009768: photosynthesis, light harvesting in photosystem I1.20E-11
14GO:0018298: protein-chromophore linkage8.75E-11
15GO:0009637: response to blue light2.86E-07
16GO:0009644: response to high light intensity8.20E-07
17GO:0009409: response to cold1.04E-06
18GO:0007623: circadian rhythm1.73E-06
19GO:0009645: response to low light intensity stimulus3.90E-06
20GO:0009769: photosynthesis, light harvesting in photosystem II3.90E-06
21GO:0010218: response to far red light4.87E-06
22GO:0009416: response to light stimulus5.40E-06
23GO:0042542: response to hydrogen peroxide1.20E-05
24GO:0015979: photosynthesis2.21E-05
25GO:0010600: regulation of auxin biosynthetic process4.83E-05
26GO:0043097: pyrimidine nucleoside salvage7.68E-05
27GO:0000380: alternative mRNA splicing, via spliceosome7.68E-05
28GO:0006206: pyrimidine nucleobase metabolic process1.12E-04
29GO:0010244: response to low fluence blue light stimulus by blue low-fluence system1.53E-04
30GO:0010114: response to red light1.70E-04
31GO:0009737: response to abscisic acid1.97E-04
32GO:0010928: regulation of auxin mediated signaling pathway2.55E-04
33GO:1902265: abscisic acid homeostasis2.68E-04
34GO:0015812: gamma-aminobutyric acid transport2.68E-04
35GO:0006369: termination of RNA polymerase II transcription2.68E-04
36GO:0034472: snRNA 3'-end processing2.68E-04
37GO:0080065: 4-alpha-methyl-delta7-sterol oxidation2.68E-04
38GO:0010496: intercellular transport2.68E-04
39GO:1990641: response to iron ion starvation2.68E-04
40GO:0010362: negative regulation of anion channel activity by blue light2.68E-04
41GO:0010286: heat acclimation4.36E-04
42GO:1902884: positive regulation of response to oxidative stress5.89E-04
43GO:0030259: lipid glycosylation5.89E-04
44GO:0006101: citrate metabolic process5.89E-04
45GO:0051170: nuclear import5.89E-04
46GO:0015720: allantoin transport5.89E-04
47GO:0010155: regulation of proton transport5.89E-04
48GO:0006883: cellular sodium ion homeostasis5.89E-04
49GO:0090057: root radial pattern formation5.89E-04
50GO:0048833: specification of floral organ number5.89E-04
51GO:0015857: uracil transport5.89E-04
52GO:0080167: response to karrikin6.54E-04
53GO:0009817: defense response to fungus, incompatible interaction7.09E-04
54GO:0000160: phosphorelay signal transduction system7.55E-04
55GO:0009651: response to salt stress7.58E-04
56GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process7.86E-04
57GO:0010119: regulation of stomatal movement8.52E-04
58GO:0042344: indole glucosinolate catabolic process9.55E-04
59GO:0071230: cellular response to amino acid stimulus9.55E-04
60GO:1901562: response to paraquat9.55E-04
61GO:0006598: polyamine catabolic process9.55E-04
62GO:0090153: regulation of sphingolipid biosynthetic process9.55E-04
63GO:0071705: nitrogen compound transport9.55E-04
64GO:0042256: mature ribosome assembly9.55E-04
65GO:1902448: positive regulation of shade avoidance9.55E-04
66GO:0035556: intracellular signal transduction1.02E-03
67GO:0009414: response to water deprivation1.05E-03
68GO:0010228: vegetative to reproductive phase transition of meristem1.21E-03
69GO:0031936: negative regulation of chromatin silencing1.36E-03
70GO:0015749: monosaccharide transport1.36E-03
71GO:0030100: regulation of endocytosis1.36E-03
72GO:1901332: negative regulation of lateral root development1.36E-03
73GO:1901000: regulation of response to salt stress1.36E-03
74GO:0010601: positive regulation of auxin biosynthetic process1.36E-03
75GO:0044211: CTP salvage1.36E-03
76GO:0008643: carbohydrate transport1.44E-03
77GO:0048511: rhythmic process1.46E-03
78GO:0010017: red or far-red light signaling pathway1.60E-03
79GO:1901409: positive regulation of phosphorylation of RNA polymerase II C-terminal domain1.83E-03
80GO:0010508: positive regulation of autophagy1.83E-03
81GO:0044206: UMP salvage1.83E-03
82GO:0006646: phosphatidylethanolamine biosynthetic process1.83E-03
83GO:0009687: abscisic acid metabolic process1.83E-03
84GO:0015743: malate transport1.83E-03
85GO:0048442: sepal development1.83E-03
86GO:0009765: photosynthesis, light harvesting1.83E-03
87GO:2000306: positive regulation of photomorphogenesis1.83E-03
88GO:1901002: positive regulation of response to salt stress1.83E-03
89GO:0030104: water homeostasis1.83E-03
90GO:0009585: red, far-red light phototransduction1.91E-03
91GO:0009904: chloroplast accumulation movement2.33E-03
92GO:0016926: protein desumoylation2.33E-03
93GO:0006461: protein complex assembly2.33E-03
94GO:0048578: positive regulation of long-day photoperiodism, flowering2.33E-03
95GO:0045040: protein import into mitochondrial outer membrane2.88E-03
96GO:0045962: positive regulation of development, heterochronic2.88E-03
97GO:0009635: response to herbicide2.88E-03
98GO:0031053: primary miRNA processing2.88E-03
99GO:0009735: response to cytokinin3.02E-03
100GO:0009903: chloroplast avoidance movement3.46E-03
101GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity3.46E-03
102GO:0071470: cellular response to osmotic stress3.46E-03
103GO:0045737: positive regulation of cyclin-dependent protein serine/threonine kinase activity3.46E-03
104GO:0006355: regulation of transcription, DNA-templated3.75E-03
105GO:0048437: floral organ development4.08E-03
106GO:1900057: positive regulation of leaf senescence4.08E-03
107GO:0080111: DNA demethylation4.08E-03
108GO:0010038: response to metal ion4.08E-03
109GO:0010044: response to aluminum ion4.08E-03
110GO:0010161: red light signaling pathway4.08E-03
111GO:0016126: sterol biosynthetic process4.25E-03
112GO:0009819: drought recovery4.73E-03
113GO:0009415: response to water4.73E-03
114GO:0010078: maintenance of root meristem identity4.73E-03
115GO:0009704: de-etiolation4.73E-03
116GO:0032508: DNA duplex unwinding4.73E-03
117GO:0006506: GPI anchor biosynthetic process4.73E-03
118GO:0006102: isocitrate metabolic process4.73E-03
119GO:0015995: chlorophyll biosynthetic process5.00E-03
120GO:0009827: plant-type cell wall modification5.42E-03
121GO:0001510: RNA methylation5.42E-03
122GO:0010099: regulation of photomorphogenesis5.42E-03
123GO:0009408: response to heat5.50E-03
124GO:0090333: regulation of stomatal closure6.14E-03
125GO:0046916: cellular transition metal ion homeostasis6.14E-03
126GO:0009631: cold acclimation6.40E-03
127GO:0010043: response to zinc ion6.40E-03
128GO:0048354: mucilage biosynthetic process involved in seed coat development6.90E-03
129GO:0009638: phototropism6.90E-03
130GO:0045087: innate immune response7.02E-03
131GO:0010468: regulation of gene expression7.49E-03
132GO:0009970: cellular response to sulfate starvation7.68E-03
133GO:0006995: cellular response to nitrogen starvation7.68E-03
134GO:0048441: petal development7.68E-03
135GO:0009641: shade avoidance7.68E-03
136GO:0055062: phosphate ion homeostasis7.68E-03
137GO:0010162: seed dormancy process7.68E-03
138GO:0005975: carbohydrate metabolic process8.41E-03
139GO:0009682: induced systemic resistance8.50E-03
140GO:0052544: defense response by callose deposition in cell wall8.50E-03
141GO:0006816: calcium ion transport8.50E-03
142GO:0009640: photomorphogenesis9.06E-03
143GO:0016925: protein sumoylation9.35E-03
144GO:0000209: protein polyubiquitination9.43E-03
145GO:0006626: protein targeting to mitochondrion1.02E-02
146GO:0009785: blue light signaling pathway1.02E-02
147GO:0050826: response to freezing1.02E-02
148GO:0009718: anthocyanin-containing compound biosynthetic process1.02E-02
149GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process1.10E-02
150GO:0048440: carpel development1.11E-02
151GO:0009266: response to temperature stimulus1.11E-02
152GO:0006970: response to osmotic stress1.15E-02
153GO:0019853: L-ascorbic acid biosynthetic process1.21E-02
154GO:0007030: Golgi organization1.21E-02
155GO:0090351: seedling development1.21E-02
156GO:0010030: positive regulation of seed germination1.21E-02
157GO:0006406: mRNA export from nucleus1.40E-02
158GO:0006874: cellular calcium ion homeostasis1.50E-02
159GO:0016575: histone deacetylation1.50E-02
160GO:0007165: signal transduction1.55E-02
161GO:0003333: amino acid transmembrane transport1.61E-02
162GO:0010431: seed maturation1.61E-02
163GO:0009269: response to desiccation1.61E-02
164GO:0019748: secondary metabolic process1.71E-02
165GO:0045892: negative regulation of transcription, DNA-templated1.76E-02
166GO:0009693: ethylene biosynthetic process1.82E-02
167GO:0071215: cellular response to abscisic acid stimulus1.82E-02
168GO:0006012: galactose metabolic process1.82E-02
169GO:0048443: stamen development1.94E-02
170GO:0019722: calcium-mediated signaling1.94E-02
171GO:0010214: seed coat development1.94E-02
172GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.05E-02
173GO:0070417: cellular response to cold2.05E-02
174GO:0006511: ubiquitin-dependent protein catabolic process2.08E-02
175GO:0080022: primary root development2.17E-02
176GO:0034220: ion transmembrane transport2.17E-02
177GO:0010501: RNA secondary structure unwinding2.17E-02
178GO:0046323: glucose import2.29E-02
179GO:0009058: biosynthetic process2.31E-02
180GO:0006814: sodium ion transport2.41E-02
181GO:0042752: regulation of circadian rhythm2.41E-02
182GO:0008654: phospholipid biosynthetic process2.53E-02
183GO:0009556: microsporogenesis2.53E-02
184GO:0048510: regulation of timing of transition from vegetative to reproductive phase2.65E-02
185GO:0000302: response to reactive oxygen species2.65E-02
186GO:1901657: glycosyl compound metabolic process2.91E-02
187GO:0019760: glucosinolate metabolic process3.04E-02
188GO:0006914: autophagy3.04E-02
189GO:0016125: sterol metabolic process3.04E-02
190GO:0016567: protein ubiquitination3.16E-02
191GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process3.38E-02
192GO:0009911: positive regulation of flower development3.45E-02
193GO:0010029: regulation of seed germination3.59E-02
194GO:0009788: negative regulation of abscisic acid-activated signaling pathway3.59E-02
195GO:0009617: response to bacterium3.60E-02
196GO:0048573: photoperiodism, flowering3.88E-02
197GO:0009908: flower development4.04E-02
198GO:0006351: transcription, DNA-templated4.27E-02
199GO:0045944: positive regulation of transcription from RNA polymerase II promoter4.32E-02
200GO:0009813: flavonoid biosynthetic process4.32E-02
201GO:0009738: abscisic acid-activated signaling pathway4.39E-02
202GO:0006811: ion transport4.47E-02
203GO:0009611: response to wounding4.69E-02
204GO:0016051: carbohydrate biosynthetic process4.93E-02
RankGO TermAdjusted P value
1GO:0080082: esculin beta-glucosidase activity0.00E+00
2GO:0005358: high-affinity hydrogen:glucose symporter activity0.00E+00
3GO:0004567: beta-mannosidase activity0.00E+00
4GO:0015276: ligand-gated ion channel activity0.00E+00
5GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity0.00E+00
6GO:0016428: tRNA (cytosine-5-)-methyltransferase activity0.00E+00
7GO:0047668: amygdalin beta-glucosidase activity0.00E+00
8GO:0019912: cyclin-dependent protein kinase activating kinase activity0.00E+00
9GO:0080083: beta-gentiobiose beta-glucosidase activity0.00E+00
10GO:0030504: inorganic diphosphate transmembrane transporter activity0.00E+00
11GO:0042907: xanthine transmembrane transporter activity0.00E+00
12GO:0010349: L-galactose dehydrogenase activity0.00E+00
13GO:0031409: pigment binding5.04E-12
14GO:0016168: chlorophyll binding1.66E-09
15GO:0005515: protein binding3.84E-05
16GO:0005253: anion channel activity4.83E-05
17GO:0004849: uridine kinase activity1.53E-04
18GO:0004856: xylulokinase activity2.68E-04
19GO:0070006: metalloaminopeptidase activity2.68E-04
20GO:0008066: glutamate receptor activity2.68E-04
21GO:0015185: gamma-aminobutyric acid transmembrane transporter activity2.68E-04
22GO:0008158: hedgehog receptor activity2.68E-04
23GO:0016906: sterol 3-beta-glucosyltransferase activity2.68E-04
24GO:0009679: hexose:proton symporter activity2.68E-04
25GO:0010013: N-1-naphthylphthalamic acid binding2.68E-04
26GO:0080079: cellobiose glucosidase activity2.68E-04
27GO:0102203: brassicasterol glucosyltransferase activity2.68E-04
28GO:0102202: soladodine glucosyltransferase activity2.68E-04
29GO:0046870: cadmium ion binding2.68E-04
30GO:0016630: protochlorophyllide reductase activity5.89E-04
31GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity5.89E-04
32GO:0015180: L-alanine transmembrane transporter activity5.89E-04
33GO:0001047: core promoter binding5.89E-04
34GO:0032791: lead ion binding5.89E-04
35GO:0005274: allantoin uptake transmembrane transporter activity5.89E-04
36GO:0004609: phosphatidylserine decarboxylase activity5.89E-04
37GO:0047216: inositol 3-alpha-galactosyltransferase activity5.89E-04
38GO:0003994: aconitate hydratase activity5.89E-04
39GO:0004839: ubiquitin activating enzyme activity5.89E-04
40GO:0004565: beta-galactosidase activity7.86E-04
41GO:0031624: ubiquitin conjugating enzyme binding8.84E-04
42GO:0017150: tRNA dihydrouridine synthase activity9.55E-04
43GO:0004096: catalase activity9.55E-04
44GO:0046592: polyamine oxidase activity9.55E-04
45GO:0019948: SUMO activating enzyme activity9.55E-04
46GO:0048027: mRNA 5'-UTR binding1.36E-03
47GO:0015181: arginine transmembrane transporter activity1.36E-03
48GO:0009882: blue light photoreceptor activity1.36E-03
49GO:0015189: L-lysine transmembrane transporter activity1.36E-03
50GO:0000254: C-4 methylsterol oxidase activity1.36E-03
51GO:0004707: MAP kinase activity1.46E-03
52GO:0015210: uracil transmembrane transporter activity1.83E-03
53GO:0005313: L-glutamate transmembrane transporter activity1.83E-03
54GO:0042277: peptide binding1.83E-03
55GO:0004845: uracil phosphoribosyltransferase activity1.83E-03
56GO:0008641: small protein activating enzyme activity2.33E-03
57GO:0045300: acyl-[acyl-carrier-protein] desaturase activity2.33E-03
58GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen2.33E-03
59GO:0016773: phosphotransferase activity, alcohol group as acceptor2.33E-03
60GO:0016929: SUMO-specific protease activity2.33E-03
61GO:0010294: abscisic acid glucosyltransferase activity2.33E-03
62GO:0015145: monosaccharide transmembrane transporter activity2.33E-03
63GO:0004629: phospholipase C activity2.88E-03
64GO:0019137: thioglucosidase activity2.88E-03
65GO:0015562: efflux transmembrane transporter activity2.88E-03
66GO:0000293: ferric-chelate reductase activity2.88E-03
67GO:0005247: voltage-gated chloride channel activity2.88E-03
68GO:0061630: ubiquitin protein ligase activity3.28E-03
69GO:0000156: phosphorelay response regulator activity3.35E-03
70GO:0070300: phosphatidic acid binding3.46E-03
71GO:0004435: phosphatidylinositol phospholipase C activity3.46E-03
72GO:0009881: photoreceptor activity4.08E-03
73GO:0015140: malate transmembrane transporter activity4.08E-03
74GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen4.11E-03
75GO:0004033: aldo-keto reductase (NADP) activity4.73E-03
76GO:0102483: scopolin beta-glucosidase activity5.00E-03
77GO:0046872: metal ion binding5.30E-03
78GO:0008308: voltage-gated anion channel activity5.42E-03
79GO:0001104: RNA polymerase II transcription cofactor activity5.42E-03
80GO:0008353: RNA polymerase II carboxy-terminal domain kinase activity5.42E-03
81GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)5.42E-03
82GO:0008270: zinc ion binding5.65E-03
83GO:0005351: sugar:proton symporter activity5.81E-03
84GO:0004693: cyclin-dependent protein serine/threonine kinase activity6.11E-03
85GO:0000989: transcription factor activity, transcription factor binding6.14E-03
86GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity6.14E-03
87GO:0008422: beta-glucosidase activity7.67E-03
88GO:0004177: aminopeptidase activity8.50E-03
89GO:0047372: acylglycerol lipase activity8.50E-03
90GO:0005315: inorganic phosphate transmembrane transporter activity1.02E-02
91GO:0000155: phosphorelay sensor kinase activity1.02E-02
92GO:0005262: calcium channel activity1.02E-02
93GO:0008131: primary amine oxidase activity1.11E-02
94GO:0004175: endopeptidase activity1.11E-02
95GO:0003712: transcription cofactor activity1.21E-02
96GO:0004970: ionotropic glutamate receptor activity1.21E-02
97GO:0005217: intracellular ligand-gated ion channel activity1.21E-02
98GO:0004497: monooxygenase activity1.37E-02
99GO:0004407: histone deacetylase activity1.40E-02
100GO:0008324: cation transmembrane transporter activity1.50E-02
101GO:0051087: chaperone binding1.50E-02
102GO:0080043: quercetin 3-O-glucosyltransferase activity1.59E-02
103GO:0080044: quercetin 7-O-glucosyltransferase activity1.59E-02
104GO:0019706: protein-cysteine S-palmitoyltransferase activity1.61E-02
105GO:0008514: organic anion transmembrane transporter activity1.94E-02
106GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity2.29E-02
107GO:0004672: protein kinase activity2.33E-02
108GO:0010181: FMN binding2.41E-02
109GO:0015144: carbohydrate transmembrane transporter activity2.62E-02
110GO:0016301: kinase activity2.72E-02
111GO:0015297: antiporter activity2.88E-02
112GO:0005506: iron ion binding3.65E-02
113GO:0003700: transcription factor activity, sequence-specific DNA binding3.94E-02
114GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity4.17E-02
115GO:0005215: transporter activity4.31E-02
116GO:0008168: methyltransferase activity4.49E-02
117GO:0050897: cobalt ion binding4.62E-02
118GO:0003697: single-stranded DNA binding4.93E-02
RankGO TermAdjusted P value
1GO:0030076: light-harvesting complex3.27E-10
2GO:0009522: photosystem I1.01E-08
3GO:0010287: plastoglobule2.26E-08
4GO:0009523: photosystem II5.59E-07
5GO:0009534: chloroplast thylakoid1.12E-05
6GO:0009941: chloroplast envelope1.94E-05
7GO:0009898: cytoplasmic side of plasma membrane4.83E-05
8GO:0016021: integral component of membrane6.65E-05
9GO:0009579: thylakoid6.98E-05
10GO:0016020: membrane4.30E-04
11GO:0009535: chloroplast thylakoid membrane7.44E-04
12GO:0005777: peroxisome1.21E-03
13GO:0042651: thylakoid membrane1.33E-03
14GO:0032586: protein storage vacuole membrane1.83E-03
15GO:0009517: PSII associated light-harvesting complex II1.83E-03
16GO:0010445: nuclear dicing body1.83E-03
17GO:0016607: nuclear speck2.45E-03
18GO:0005798: Golgi-associated vesicle2.88E-03
19GO:0070847: core mediator complex2.88E-03
20GO:0005851: eukaryotic translation initiation factor 2B complex2.88E-03
21GO:0034707: chloride channel complex2.88E-03
22GO:0009986: cell surface4.08E-03
23GO:0005742: mitochondrial outer membrane translocase complex5.42E-03
24GO:0000326: protein storage vacuole5.42E-03
25GO:0000307: cyclin-dependent protein kinase holoenzyme complex5.42E-03
26GO:0000151: ubiquitin ligase complex5.54E-03
27GO:0031090: organelle membrane6.14E-03
28GO:0010494: cytoplasmic stress granule6.14E-03
29GO:0009506: plasmodesma6.61E-03
30GO:0031307: integral component of mitochondrial outer membrane9.35E-03
31GO:0005938: cell cortex1.02E-02
32GO:0031966: mitochondrial membrane1.14E-02
33GO:0005769: early endosome1.30E-02
34GO:0005741: mitochondrial outer membrane1.61E-02
35GO:0005773: vacuole1.65E-02
36GO:0005744: mitochondrial inner membrane presequence translocase complex1.94E-02
37GO:0005618: cell wall2.13E-02
38GO:0031965: nuclear membrane2.53E-02
39GO:0016592: mediator complex2.78E-02
40GO:0005783: endoplasmic reticulum3.04E-02
41GO:0000932: P-body3.45E-02
42GO:0005634: nucleus4.16E-02
43GO:0009707: chloroplast outer membrane4.17E-02
44GO:0048046: apoplast4.37E-02
45GO:0005886: plasma membrane4.41E-02
46GO:0005829: cytosol4.98E-02
Gene type



Gene DE type