co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G01060

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0030644: cellular chloride ion homeostasis	0.00E+00
2	GO:0015717: triose phosphate transport	0.00E+00
3	GO:1903508: positive regulation of nucleic acid-templated transcription	0.00E+00
4	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
5	GO:0015827: tryptophan transport	0.00E+00
6	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
7	GO:1902171: regulation of tocopherol cyclase activity	0.00E+00
8	GO:0009877: nodulation	0.00E+00
9	GO:0046677: response to antibiotic	0.00E+00
10	GO:0015810: aspartate transport	0.00E+00
11	GO:0009768: photosynthesis, light harvesting in photosystem I	3.50E-16
12	GO:0015979: photosynthesis	1.22E-11
13	GO:0018298: protein-chromophore linkage	2.37E-11
14	GO:0009645: response to low light intensity stimulus	1.36E-09
15	GO:0009644: response to high light intensity	1.10E-08
16	GO:0010114: response to red light	3.85E-07
17	GO:0010218: response to far red light	5.49E-06
18	GO:0009637: response to blue light	7.41E-06
19	GO:0080167: response to karrikin	4.18E-05
20	GO:0009769: photosynthesis, light harvesting in photosystem II	4.38E-05
21	GO:0009409: response to cold	8.17E-05
22	GO:0015995: chlorophyll biosynthetic process	9.88E-05
23	GO:0015812: gamma-aminobutyric acid transport	1.00E-04
24	GO:0007623: circadian rhythm	1.27E-04
25	GO:0050992: dimethylallyl diphosphate biosynthetic process	2.36E-04
26	GO:0006883: cellular sodium ion homeostasis	2.36E-04
27	GO:0009915: phloem sucrose loading	2.36E-04
28	GO:1902884: positive regulation of response to oxidative stress	2.36E-04
29	GO:0009416: response to light stimulus	3.07E-04
30	GO:1901562: response to paraquat	3.92E-04
31	GO:0035436: triose phosphate transmembrane transport	3.92E-04
32	GO:1902448: positive regulation of shade avoidance	3.92E-04
33	GO:0003333: amino acid transmembrane transport	3.94E-04
34	GO:0010017: red or far-red light signaling pathway	4.31E-04
35	GO:0009765: photosynthesis, light harvesting	7.50E-04
36	GO:2000306: positive regulation of photomorphogenesis	7.50E-04
37	GO:0010600: regulation of auxin biosynthetic process	7.50E-04
38	GO:0015713: phosphoglycerate transport	7.50E-04
39	GO:1901002: positive regulation of response to salt stress	7.50E-04
40	GO:0015846: polyamine transport	7.50E-04
41	GO:0030104: water homeostasis	7.50E-04
42	GO:0016123: xanthophyll biosynthetic process	9.47E-04
43	GO:0055114: oxidation-reduction process	1.10E-03
44	GO:0009635: response to herbicide	1.16E-03
45	GO:0009643: photosynthetic acclimation	1.16E-03
46	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.16E-03
47	GO:0045962: positive regulation of development, heterochronic	1.16E-03
48	GO:0071470: cellular response to osmotic stress	1.38E-03
49	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.38E-03
50	GO:0010161: red light signaling pathway	1.62E-03
51	GO:0010196: nonphotochemical quenching	1.62E-03
52	GO:0009658: chloroplast organization	1.83E-03
53	GO:0009704: de-etiolation	1.87E-03
54	GO:0050821: protein stabilization	1.87E-03
55	GO:0010928: regulation of auxin mediated signaling pathway	1.87E-03
56	GO:0042255: ribosome assembly	1.87E-03
57	GO:0010099: regulation of photomorphogenesis	2.14E-03
58	GO:0090333: regulation of stomatal closure	2.41E-03
59	GO:0010206: photosystem II repair	2.41E-03
60	GO:0009651: response to salt stress	2.61E-03
61	GO:0044550: secondary metabolite biosynthetic process	2.66E-03
62	GO:0009688: abscisic acid biosynthetic process	3.00E-03
63	GO:0009641: shade avoidance	3.00E-03
64	GO:0055062: phosphate ion homeostasis	3.00E-03
65	GO:0006351: transcription, DNA-templated	3.10E-03
66	GO:0018119: peptidyl-cysteine S-nitrosylation	3.31E-03
67	GO:0030148: sphingolipid biosynthetic process	3.31E-03
68	GO:0046856: phosphatidylinositol dephosphorylation	3.31E-03
69	GO:0015770: sucrose transport	3.31E-03
70	GO:0006629: lipid metabolic process	3.92E-03
71	GO:0050826: response to freezing	3.95E-03
72	GO:0018107: peptidyl-threonine phosphorylation	3.95E-03
73	GO:0009718: anthocyanin-containing compound biosynthetic process	3.95E-03
74	GO:0009767: photosynthetic electron transport chain	3.95E-03
75	GO:0009266: response to temperature stimulus	4.30E-03
76	GO:0010207: photosystem II assembly	4.30E-03
77	GO:0009414: response to water deprivation	4.56E-03
78	GO:0090351: seedling development	4.64E-03
79	GO:0005985: sucrose metabolic process	4.64E-03
80	GO:0006355: regulation of transcription, DNA-templated	5.39E-03
81	GO:0048511: rhythmic process	6.14E-03
82	GO:0010431: seed maturation	6.14E-03
83	GO:0009269: response to desiccation	6.14E-03
84	GO:0071215: cellular response to abscisic acid stimulus	6.94E-03
85	GO:0009735: response to cytokinin	7.24E-03
86	GO:0045492: xylan biosynthetic process	7.35E-03
87	GO:0070417: cellular response to cold	7.78E-03
88	GO:0006606: protein import into nucleus	8.21E-03
89	GO:0010182: sugar mediated signaling pathway	8.65E-03
90	GO:0006814: sodium ion transport	9.10E-03
91	GO:0000302: response to reactive oxygen species	1.00E-02
92	GO:0032502: developmental process	1.05E-02
93	GO:1901657: glycosyl compound metabolic process	1.10E-02
94	GO:0010286: heat acclimation	1.20E-02
95	GO:0006970: response to osmotic stress	1.27E-02
96	GO:0009723: response to ethylene	1.37E-02
97	GO:0048573: photoperiodism, flowering	1.46E-02
98	GO:0009737: response to abscisic acid	1.48E-02
99	GO:0016311: dephosphorylation	1.51E-02
100	GO:0000160: phosphorelay signal transduction system	1.62E-02
101	GO:0007568: aging	1.74E-02
102	GO:0009631: cold acclimation	1.74E-02
103	GO:0010119: regulation of stomatal movement	1.74E-02
104	GO:0006865: amino acid transport	1.80E-02
105	GO:0034599: cellular response to oxidative stress	1.91E-02
106	GO:0032259: methylation	2.08E-02
107	GO:0042542: response to hydrogen peroxide	2.16E-02
108	GO:0009408: response to heat	2.17E-02
109	GO:0051707: response to other organism	2.22E-02
110	GO:0009640: photomorphogenesis	2.22E-02
111	GO:0008643: carbohydrate transport	2.35E-02
112	GO:0009965: leaf morphogenesis	2.41E-02
113	GO:0006812: cation transport	2.61E-02
114	GO:0042538: hyperosmotic salinity response	2.61E-02
115	GO:0009809: lignin biosynthetic process	2.75E-02
116	GO:0009585: red, far-red light phototransduction	2.75E-02
117	GO:0009909: regulation of flower development	2.95E-02
118	GO:0009624: response to nematode	3.53E-02
119	GO:0018105: peptidyl-serine phosphorylation	3.61E-02
120	GO:0035556: intracellular signal transduction	4.05E-02
121	GO:0055085: transmembrane transport	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0051745: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity	0.00E+00
2	GO:0015038: glutathione disulfide oxidoreductase activity	0.00E+00
3	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
4	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
5	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
6	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
7	GO:0009540: zeaxanthin epoxidase [overall] activity	0.00E+00
8	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
9	GO:0004567: beta-mannosidase activity	0.00E+00
10	GO:0080082: esculin beta-glucosidase activity	0.00E+00
11	GO:0031409: pigment binding	2.98E-14
12	GO:0016168: chlorophyll binding	1.04E-11
13	GO:0046872: metal ion binding	2.78E-05
14	GO:0015185: gamma-aminobutyric acid transmembrane transporter activity	1.00E-04
15	GO:0080079: cellobiose glucosidase activity	1.00E-04
16	GO:0052631: sphingolipid delta-8 desaturase activity	1.00E-04
17	GO:0046429: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity	1.00E-04
18	GO:0015297: antiporter activity	1.17E-04
19	GO:0015180: L-alanine transmembrane transporter activity	2.36E-04
20	GO:0015172: acidic amino acid transmembrane transporter activity	2.36E-04
21	GO:0080045: quercetin 3'-O-glucosyltransferase activity	2.36E-04
22	GO:0015293: symporter activity	2.69E-04
23	GO:0015171: amino acid transmembrane transporter activity	3.90E-04
24	GO:0071917: triose-phosphate transmembrane transporter activity	3.92E-04
25	GO:0010277: chlorophyllide a oxygenase [overall] activity	3.92E-04
26	GO:0015189: L-lysine transmembrane transporter activity	5.64E-04
27	GO:0015175: neutral amino acid transmembrane transporter activity	5.64E-04
28	GO:0015181: arginine transmembrane transporter activity	5.64E-04
29	GO:0015203: polyamine transmembrane transporter activity	5.64E-04
30	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	7.36E-04
31	GO:0015120: phosphoglycerate transmembrane transporter activity	7.50E-04
32	GO:0005313: L-glutamate transmembrane transporter activity	7.50E-04
33	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	9.47E-04
34	GO:0051538: 3 iron, 4 sulfur cluster binding	9.47E-04
35	GO:0005351: sugar:proton symporter activity	1.03E-03
36	GO:0080046: quercetin 4'-O-glucosyltransferase activity	1.16E-03
37	GO:0008506: sucrose:proton symporter activity	1.62E-03
38	GO:0016621: cinnamoyl-CoA reductase activity	1.62E-03
39	GO:0071949: FAD binding	2.41E-03
40	GO:0000989: transcription factor activity, transcription factor binding	2.41E-03
41	GO:0051537: 2 iron, 2 sulfur cluster binding	2.51E-03
42	GO:0015174: basic amino acid transmembrane transporter activity	2.70E-03
43	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	3.00E-03
44	GO:0047372: acylglycerol lipase activity	3.31E-03
45	GO:0008515: sucrose transmembrane transporter activity	3.31E-03
46	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	3.63E-03
47	GO:0004022: alcohol dehydrogenase (NAD) activity	3.95E-03
48	GO:0005315: inorganic phosphate transmembrane transporter activity	3.95E-03
49	GO:0005506: iron ion binding	4.61E-03
50	GO:0004190: aspartic-type endopeptidase activity	4.64E-03
51	GO:0003712: transcription cofactor activity	4.64E-03
52	GO:0004707: MAP kinase activity	6.14E-03
53	GO:0015144: carbohydrate transmembrane transporter activity	6.60E-03
54	GO:0003727: single-stranded RNA binding	7.35E-03
55	GO:0008514: organic anion transmembrane transporter activity	7.35E-03
56	GO:0050662: coenzyme binding	9.10E-03
57	GO:0000156: phosphorelay response regulator activity	1.10E-02
58	GO:0008168: methyltransferase activity	1.14E-02
59	GO:0005515: protein binding	1.34E-02
60	GO:0102483: scopolin beta-glucosidase activity	1.46E-02
61	GO:0004497: monooxygenase activity	1.47E-02
62	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	1.90E-02
63	GO:0003993: acid phosphatase activity	1.91E-02
64	GO:0008422: beta-glucosidase activity	1.97E-02
65	GO:0003677: DNA binding	2.19E-02
66	GO:0008270: zinc ion binding	2.37E-02
67	GO:0005198: structural molecule activity	2.41E-02
68	GO:0031625: ubiquitin protein ligase binding	2.95E-02
69	GO:0003700: transcription factor activity, sequence-specific DNA binding	3.03E-02
70	GO:0045735: nutrient reservoir activity	3.09E-02
71	GO:0080043: quercetin 3-O-glucosyltransferase activity	3.31E-02
72	GO:0080044: quercetin 7-O-glucosyltransferase activity	3.31E-02
73	GO:0020037: heme binding	3.51E-02
74	GO:0015035: protein disulfide oxidoreductase activity	3.61E-02
75	GO:0019843: rRNA binding	4.14E-02
76	GO:0016829: lyase activity	4.38E-02
77	GO:0008565: protein transporter activity	4.70E-02

Rank	GO Term	Adjusted P value
1	GO:0009535: chloroplast thylakoid membrane	2.31E-17
2	GO:0009534: chloroplast thylakoid	6.22E-15
3	GO:0009522: photosystem I	8.39E-15
4	GO:0010287: plastoglobule	3.10E-14
5	GO:0009579: thylakoid	1.58E-13
6	GO:0009941: chloroplast envelope	2.30E-13
7	GO:0030076: light-harvesting complex	3.80E-12
8	GO:0009507: chloroplast	4.22E-08
9	GO:0009523: photosystem II	9.18E-07
10	GO:0009517: PSII associated light-harvesting complex II	9.05E-06
11	GO:0042651: thylakoid membrane	1.16E-05
12	GO:0009538: photosystem I reaction center	5.73E-05
13	GO:0009783: photosystem II antenna complex	1.00E-04
14	GO:0016021: integral component of membrane	1.27E-04
15	GO:0016020: membrane	1.77E-04
16	GO:0009706: chloroplast inner membrane	5.38E-04
17	GO:0009898: cytoplasmic side of plasma membrane	7.50E-04
18	GO:0030660: Golgi-associated vesicle membrane	7.50E-04
19	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	7.50E-04
20	GO:0009533: chloroplast stromal thylakoid	1.62E-03
21	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	1.87E-03
22	GO:0031977: thylakoid lumen	2.14E-03
23	GO:0031969: chloroplast membrane	2.40E-03
24	GO:0005765: lysosomal membrane	3.31E-03
25	GO:0030095: chloroplast photosystem II	4.30E-03
26	GO:0009543: chloroplast thylakoid lumen	5.52E-03
27	GO:0009654: photosystem II oxygen evolving complex	5.75E-03
28	GO:0005887: integral component of plasma membrane	5.78E-03
29	GO:0019898: extrinsic component of membrane	9.56E-03
30	GO:0000151: ubiquitin ligase complex	1.57E-02
31	GO:0031966: mitochondrial membrane	2.61E-02
32	GO:0009570: chloroplast stroma	2.81E-02
33	GO:0016607: nuclear speck	3.17E-02
34	GO:0010008: endosome membrane	3.17E-02