Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G48070

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0042493: response to drug0.00E+00
2GO:1905499: trichome papilla formation0.00E+00
3GO:0002184: cytoplasmic translational termination0.00E+00
4GO:0033494: ferulate metabolic process0.00E+00
5GO:0016553: base conversion or substitution editing0.00E+00
6GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
7GO:0007638: mechanosensory behavior0.00E+00
8GO:0032544: plastid translation2.63E-11
9GO:0009773: photosynthetic electron transport in photosystem I3.63E-10
10GO:0006412: translation3.48E-08
11GO:0010027: thylakoid membrane organization3.79E-07
12GO:0042254: ribosome biogenesis5.73E-07
13GO:0009658: chloroplast organization5.79E-06
14GO:0010196: nonphotochemical quenching1.11E-05
15GO:0015979: photosynthesis1.96E-05
16GO:0090391: granum assembly2.54E-05
17GO:0042335: cuticle development3.72E-05
18GO:0015976: carbon utilization9.74E-05
19GO:0010207: photosystem II assembly1.28E-04
20GO:0009735: response to cytokinin1.94E-04
21GO:0009409: response to cold3.34E-04
22GO:1904966: positive regulation of vitamin E biosynthetic process4.05E-04
23GO:0010442: guard cell morphogenesis4.05E-04
24GO:0000481: maturation of 5S rRNA4.05E-04
25GO:0071277: cellular response to calcium ion4.05E-04
26GO:1904964: positive regulation of phytol biosynthetic process4.05E-04
27GO:0042371: vitamin K biosynthetic process4.05E-04
28GO:1902458: positive regulation of stomatal opening4.05E-04
29GO:0034337: RNA folding4.05E-04
30GO:0071588: hydrogen peroxide mediated signaling pathway4.05E-04
31GO:0060627: regulation of vesicle-mediated transport4.05E-04
32GO:0043489: RNA stabilization4.05E-04
33GO:0042742: defense response to bacterium4.57E-04
34GO:0000413: protein peptidyl-prolyl isomerization4.74E-04
35GO:0006869: lipid transport7.98E-04
36GO:0034755: iron ion transmembrane transport8.76E-04
37GO:1903426: regulation of reactive oxygen species biosynthetic process8.76E-04
38GO:0030388: fructose 1,6-bisphosphate metabolic process8.76E-04
39GO:0052541: plant-type cell wall cellulose metabolic process8.76E-04
40GO:1902326: positive regulation of chlorophyll biosynthetic process8.76E-04
41GO:0071492: cellular response to UV-A1.42E-03
42GO:0090506: axillary shoot meristem initiation1.42E-03
43GO:0006954: inflammatory response1.42E-03
44GO:0006000: fructose metabolic process1.42E-03
45GO:0006518: peptide metabolic process1.42E-03
46GO:0019253: reductive pentose-phosphate cycle1.59E-03
47GO:0006636: unsaturated fatty acid biosynthetic process1.99E-03
48GO:0006165: nucleoside diphosphate phosphorylation2.06E-03
49GO:0006228: UTP biosynthetic process2.06E-03
50GO:0043572: plastid fission2.06E-03
51GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.06E-03
52GO:0007231: osmosensory signaling pathway2.06E-03
53GO:0009650: UV protection2.06E-03
54GO:0006241: CTP biosynthetic process2.06E-03
55GO:0051016: barbed-end actin filament capping2.06E-03
56GO:0055114: oxidation-reduction process2.48E-03
57GO:0045454: cell redox homeostasis2.64E-03
58GO:0061077: chaperone-mediated protein folding2.67E-03
59GO:0010037: response to carbon dioxide2.76E-03
60GO:0009956: radial pattern formation2.76E-03
61GO:0071486: cellular response to high light intensity2.76E-03
62GO:0009765: photosynthesis, light harvesting2.76E-03
63GO:0006183: GTP biosynthetic process2.76E-03
64GO:0045727: positive regulation of translation2.76E-03
65GO:2000122: negative regulation of stomatal complex development2.76E-03
66GO:0033500: carbohydrate homeostasis2.76E-03
67GO:0008643: carbohydrate transport3.14E-03
68GO:0048359: mucilage metabolic process involved in seed coat development3.54E-03
69GO:0016120: carotene biosynthetic process3.54E-03
70GO:0006564: L-serine biosynthetic process3.54E-03
71GO:0010236: plastoquinone biosynthetic process3.54E-03
72GO:0006656: phosphatidylcholine biosynthetic process3.54E-03
73GO:0045038: protein import into chloroplast thylakoid membrane3.54E-03
74GO:0016123: xanthophyll biosynthetic process3.54E-03
75GO:0006665: sphingolipid metabolic process3.54E-03
76GO:0006810: transport3.55E-03
77GO:0071555: cell wall organization4.28E-03
78GO:0018258: protein O-linked glycosylation via hydroxyproline4.38E-03
79GO:0010405: arabinogalactan protein metabolic process4.38E-03
80GO:0042549: photosystem II stabilization4.38E-03
81GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway4.38E-03
82GO:0009913: epidermal cell differentiation4.38E-03
83GO:0016554: cytidine to uridine editing4.38E-03
84GO:0006086: acetyl-CoA biosynthetic process from pyruvate4.38E-03
85GO:0006694: steroid biosynthetic process5.27E-03
86GO:1901259: chloroplast rRNA processing5.27E-03
87GO:0010189: vitamin E biosynthetic process5.27E-03
88GO:0010019: chloroplast-nucleus signaling pathway5.27E-03
89GO:0048444: floral organ morphogenesis5.27E-03
90GO:0010555: response to mannitol5.27E-03
91GO:0009955: adaxial/abaxial pattern specification5.27E-03
92GO:0010067: procambium histogenesis5.27E-03
93GO:0009395: phospholipid catabolic process6.23E-03
94GO:0051693: actin filament capping6.23E-03
95GO:0042255: ribosome assembly7.25E-03
96GO:0009704: de-etiolation7.25E-03
97GO:0032508: DNA duplex unwinding7.25E-03
98GO:2000070: regulation of response to water deprivation7.25E-03
99GO:0030091: protein repair7.25E-03
100GO:0008610: lipid biosynthetic process7.25E-03
101GO:0009642: response to light intensity7.25E-03
102GO:0017004: cytochrome complex assembly8.32E-03
103GO:0009808: lignin metabolic process8.32E-03
104GO:0006002: fructose 6-phosphate metabolic process8.32E-03
105GO:0015996: chlorophyll catabolic process8.32E-03
106GO:0007186: G-protein coupled receptor signaling pathway8.32E-03
107GO:0010411: xyloglucan metabolic process9.25E-03
108GO:0000902: cell morphogenesis9.45E-03
109GO:0015780: nucleotide-sugar transport9.45E-03
110GO:0090305: nucleic acid phosphodiester bond hydrolysis9.45E-03
111GO:0010206: photosystem II repair9.45E-03
112GO:0090333: regulation of stomatal closure9.45E-03
113GO:0018298: protein-chromophore linkage1.03E-02
114GO:0042744: hydrogen peroxide catabolic process1.03E-02
115GO:0009817: defense response to fungus, incompatible interaction1.03E-02
116GO:0010205: photoinhibition1.06E-02
117GO:0042761: very long-chain fatty acid biosynthetic process1.06E-02
118GO:1900865: chloroplast RNA modification1.06E-02
119GO:0006633: fatty acid biosynthetic process1.16E-02
120GO:0009631: cold acclimation1.19E-02
121GO:0006979: response to oxidative stress1.27E-02
122GO:0006879: cellular iron ion homeostasis1.31E-02
123GO:0006415: translational termination1.31E-02
124GO:0018119: peptidyl-cysteine S-nitrosylation1.31E-02
125GO:0010015: root morphogenesis1.31E-02
126GO:0000038: very long-chain fatty acid metabolic process1.31E-02
127GO:0006816: calcium ion transport1.31E-02
128GO:0043085: positive regulation of catalytic activity1.31E-02
129GO:0016042: lipid catabolic process1.34E-02
130GO:0034599: cellular response to oxidative stress1.36E-02
131GO:0045037: protein import into chloroplast stroma1.45E-02
132GO:0006820: anion transport1.45E-02
133GO:0006006: glucose metabolic process1.58E-02
134GO:0030036: actin cytoskeleton organization1.58E-02
135GO:0009725: response to hormone1.58E-02
136GO:0006094: gluconeogenesis1.58E-02
137GO:0005986: sucrose biosynthetic process1.58E-02
138GO:0009933: meristem structural organization1.73E-02
139GO:0007015: actin filament organization1.73E-02
140GO:0010223: secondary shoot formation1.73E-02
141GO:0009934: regulation of meristem structural organization1.73E-02
142GO:0010143: cutin biosynthetic process1.73E-02
143GO:0010020: chloroplast fission1.73E-02
144GO:0042546: cell wall biogenesis1.75E-02
145GO:0005985: sucrose metabolic process1.87E-02
146GO:0070588: calcium ion transmembrane transport1.87E-02
147GO:0006071: glycerol metabolic process2.02E-02
148GO:0019762: glucosinolate catabolic process2.02E-02
149GO:0010025: wax biosynthetic process2.02E-02
150GO:0006487: protein N-linked glycosylation2.18E-02
151GO:0019344: cysteine biosynthetic process2.18E-02
152GO:0000027: ribosomal large subunit assembly2.18E-02
153GO:0009768: photosynthesis, light harvesting in photosystem I2.33E-02
154GO:0051302: regulation of cell division2.33E-02
155GO:0006418: tRNA aminoacylation for protein translation2.33E-02
156GO:0010026: trichome differentiation2.33E-02
157GO:0016998: cell wall macromolecule catabolic process2.50E-02
158GO:0031408: oxylipin biosynthetic process2.50E-02
159GO:0080092: regulation of pollen tube growth2.66E-02
160GO:0019748: secondary metabolic process2.66E-02
161GO:0030245: cellulose catabolic process2.66E-02
162GO:0016226: iron-sulfur cluster assembly2.66E-02
163GO:0006096: glycolytic process2.69E-02
164GO:0009294: DNA mediated transformation2.83E-02
165GO:0009411: response to UV2.83E-02
166GO:0001944: vasculature development2.83E-02
167GO:0019722: calcium-mediated signaling3.01E-02
168GO:0009306: protein secretion3.01E-02
169GO:0010089: xylem development3.01E-02
170GO:0010091: trichome branching3.01E-02
171GO:0016117: carotenoid biosynthetic process3.19E-02
172GO:0010087: phloem or xylem histogenesis3.37E-02
173GO:0006662: glycerol ether metabolic process3.55E-02
174GO:0010305: leaf vascular tissue pattern formation3.55E-02
175GO:0010182: sugar mediated signaling pathway3.55E-02
176GO:0009741: response to brassinosteroid3.55E-02
177GO:0016132: brassinosteroid biosynthetic process4.12E-02
178GO:0048510: regulation of timing of transition from vegetative to reproductive phase4.12E-02
179GO:0000302: response to reactive oxygen species4.12E-02
180GO:0032502: developmental process4.32E-02
181GO:0007264: small GTPase mediated signal transduction4.32E-02
182GO:1901657: glycosyl compound metabolic process4.52E-02
183GO:0032259: methylation4.57E-02
184GO:0009790: embryo development4.72E-02
185GO:0019760: glucosinolate metabolic process4.73E-02
186GO:0006457: protein folding4.77E-02
187GO:0007267: cell-cell signaling4.93E-02
RankGO TermAdjusted P value
1GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
2GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
3GO:0045435: lycopene epsilon cyclase activity0.00E+00
4GO:0004822: isoleucine-tRNA ligase activity0.00E+00
5GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity0.00E+00
6GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
7GO:1990534: thermospermine oxidase activity0.00E+00
8GO:0050614: delta24-sterol reductase activity0.00E+00
9GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
10GO:0052667: phosphomethylethanolamine N-methyltransferase activity0.00E+00
11GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity0.00E+00
12GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
13GO:0019843: rRNA binding2.34E-15
14GO:0003735: structural constituent of ribosome3.86E-09
15GO:0051920: peroxiredoxin activity6.52E-08
16GO:0016209: antioxidant activity2.30E-07
17GO:0003755: peptidyl-prolyl cis-trans isomerase activity3.68E-07
18GO:0005528: FK506 binding2.06E-04
19GO:0004601: peroxidase activity2.92E-04
20GO:0019210: kinase inhibitor activity4.05E-04
21GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity4.05E-04
22GO:0047259: glucomannan 4-beta-mannosyltransferase activity4.05E-04
23GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity4.05E-04
24GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water5.75E-04
25GO:0000234: phosphoethanolamine N-methyltransferase activity8.76E-04
26GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity8.76E-04
27GO:0008967: phosphoglycolate phosphatase activity8.76E-04
28GO:0042389: omega-3 fatty acid desaturase activity8.76E-04
29GO:0004617: phosphoglycerate dehydrogenase activity8.76E-04
30GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity8.76E-04
31GO:0016168: chlorophyll binding1.16E-03
32GO:0016788: hydrolase activity, acting on ester bonds1.36E-03
33GO:0004089: carbonate dehydratase activity1.41E-03
34GO:0030267: glyoxylate reductase (NADP) activity1.42E-03
35GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.42E-03
36GO:0050734: hydroxycinnamoyltransferase activity1.42E-03
37GO:0002161: aminoacyl-tRNA editing activity1.42E-03
38GO:0008266: poly(U) RNA binding1.59E-03
39GO:0004222: metalloendopeptidase activity1.72E-03
40GO:0008289: lipid binding1.93E-03
41GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity2.06E-03
42GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity2.06E-03
43GO:0004550: nucleoside diphosphate kinase activity2.06E-03
44GO:0043023: ribosomal large subunit binding2.06E-03
45GO:0016149: translation release factor activity, codon specific2.06E-03
46GO:0043495: protein anchor2.76E-03
47GO:0004659: prenyltransferase activity2.76E-03
48GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.76E-03
49GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity2.76E-03
50GO:0022891: substrate-specific transmembrane transporter activity3.19E-03
51GO:0030570: pectate lyase activity3.19E-03
52GO:0008514: organic anion transmembrane transporter activity3.47E-03
53GO:0016773: phosphotransferase activity, alcohol group as acceptor3.54E-03
54GO:0004040: amidase activity3.54E-03
55GO:0008381: mechanically-gated ion channel activity3.54E-03
56GO:0009922: fatty acid elongase activity3.54E-03
57GO:0016688: L-ascorbate peroxidase activity4.38E-03
58GO:0008200: ion channel inhibitor activity4.38E-03
59GO:1990714: hydroxyproline O-galactosyltransferase activity4.38E-03
60GO:0004130: cytochrome-c peroxidase activity4.38E-03
61GO:0004723: calcium-dependent protein serine/threonine phosphatase activity5.27E-03
62GO:0033743: peptide-methionine (R)-S-oxide reductase activity5.27E-03
63GO:0051753: mannan synthase activity5.27E-03
64GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity5.27E-03
65GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds5.41E-03
66GO:0016762: xyloglucan:xyloglucosyl transferase activity5.42E-03
67GO:0019899: enzyme binding6.23E-03
68GO:0016759: cellulose synthase activity6.57E-03
69GO:0008237: metallopeptidase activity6.98E-03
70GO:0004033: aldo-keto reductase (NADP) activity7.25E-03
71GO:0052747: sinapyl alcohol dehydrogenase activity7.25E-03
72GO:0052689: carboxylic ester hydrolase activity9.05E-03
73GO:0016798: hydrolase activity, acting on glycosyl bonds9.25E-03
74GO:0003747: translation release factor activity9.45E-03
75GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors9.45E-03
76GO:0008889: glycerophosphodiester phosphodiesterase activity9.45E-03
77GO:0005381: iron ion transmembrane transporter activity1.06E-02
78GO:0030234: enzyme regulator activity1.19E-02
79GO:0008047: enzyme activator activity1.19E-02
80GO:0005089: Rho guanyl-nucleotide exchange factor activity1.31E-02
81GO:0000049: tRNA binding1.45E-02
82GO:0045551: cinnamyl-alcohol dehydrogenase activity1.45E-02
83GO:0009055: electron carrier activity1.56E-02
84GO:0031072: heat shock protein binding1.58E-02
85GO:0005262: calcium channel activity1.58E-02
86GO:0004565: beta-galactosidase activity1.58E-02
87GO:0046872: metal ion binding1.70E-02
88GO:0008131: primary amine oxidase activity1.73E-02
89GO:0102337: 3-oxo-cerotoyl-CoA synthase activity2.02E-02
90GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity2.02E-02
91GO:0031409: pigment binding2.02E-02
92GO:0102336: 3-oxo-arachidoyl-CoA synthase activity2.02E-02
93GO:0051287: NAD binding2.04E-02
94GO:0051536: iron-sulfur cluster binding2.18E-02
95GO:0008324: cation transmembrane transporter activity2.33E-02
96GO:0003690: double-stranded DNA binding2.36E-02
97GO:0004176: ATP-dependent peptidase activity2.50E-02
98GO:0033612: receptor serine/threonine kinase binding2.50E-02
99GO:0008810: cellulase activity2.83E-02
100GO:0003727: single-stranded RNA binding3.01E-02
101GO:0047134: protein-disulfide reductase activity3.19E-02
102GO:0004812: aminoacyl-tRNA ligase activity3.19E-02
103GO:0005102: receptor binding3.19E-02
104GO:0008080: N-acetyltransferase activity3.55E-02
105GO:0004791: thioredoxin-disulfide reductase activity3.74E-02
106GO:0050662: coenzyme binding3.74E-02
107GO:0004872: receptor activity3.93E-02
108GO:0048038: quinone binding4.12E-02
109GO:0004518: nuclease activity4.32E-02
110GO:0000156: phosphorelay response regulator activity4.52E-02
111GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.52E-02
112GO:0051015: actin filament binding4.52E-02
113GO:0016722: oxidoreductase activity, oxidizing metal ions4.93E-02
RankGO TermAdjusted P value
1GO:0009515: granal stacked thylakoid0.00E+00
2GO:0044391: ribosomal subunit0.00E+00
3GO:0010240: plastid pyruvate dehydrogenase complex0.00E+00
4GO:0009507: chloroplast6.76E-42
5GO:0009570: chloroplast stroma8.63E-27
6GO:0009941: chloroplast envelope3.00E-26
7GO:0009535: chloroplast thylakoid membrane4.51E-26
8GO:0009579: thylakoid2.55E-19
9GO:0009534: chloroplast thylakoid1.78E-14
10GO:0048046: apoplast8.22E-14
11GO:0009543: chloroplast thylakoid lumen1.82E-12
12GO:0005840: ribosome2.20E-09
13GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)6.96E-09
14GO:0046658: anchored component of plasma membrane1.91E-08
15GO:0031977: thylakoid lumen1.56E-07
16GO:0010319: stromule6.57E-06
17GO:0031225: anchored component of membrane5.05E-05
18GO:0009923: fatty acid elongase complex4.05E-04
19GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex4.05E-04
20GO:0042170: plastid membrane8.76E-04
21GO:0008290: F-actin capping protein complex8.76E-04
22GO:0005618: cell wall1.12E-03
23GO:0000311: plastid large ribosomal subunit1.24E-03
24GO:0009706: chloroplast inner membrane1.25E-03
25GO:0009528: plastid inner membrane1.42E-03
26GO:0009536: plastid2.31E-03
27GO:0009505: plant-type cell wall2.43E-03
28GO:0009654: photosystem II oxygen evolving complex2.43E-03
29GO:0042651: thylakoid membrane2.43E-03
30GO:0009527: plastid outer membrane2.76E-03
31GO:0005886: plasma membrane4.20E-03
32GO:0016021: integral component of membrane4.58E-03
33GO:0009523: photosystem II5.06E-03
34GO:0019898: extrinsic component of membrane5.06E-03
35GO:0009533: chloroplast stromal thylakoid6.23E-03
36GO:0031969: chloroplast membrane7.77E-03
37GO:0010287: plastoglobule8.11E-03
38GO:0016020: membrane8.59E-03
39GO:0005763: mitochondrial small ribosomal subunit9.45E-03
40GO:0015934: large ribosomal subunit1.19E-02
41GO:0016324: apical plasma membrane1.19E-02
42GO:0005884: actin filament1.31E-02
43GO:0032040: small-subunit processome1.45E-02
44GO:0031012: extracellular matrix1.58E-02
45GO:0000312: plastid small ribosomal subunit1.73E-02
46GO:0030095: chloroplast photosystem II1.73E-02
47GO:0030076: light-harvesting complex1.87E-02
48GO:0005875: microtubule associated complex2.02E-02
49GO:0005758: mitochondrial intermembrane space2.18E-02
50GO:0009532: plastid stroma2.50E-02
51GO:0015935: small ribosomal subunit2.50E-02
52GO:0009522: photosystem I3.74E-02
53GO:0005576: extracellular region4.65E-02
Gene type



Gene DE type