co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G47970

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010793: regulation of mRNA export from nucleus	0.00E+00
2	GO:2001253: regulation of histone H3-K36 trimethylation	0.00E+00
3	GO:0060213: positive regulation of nuclear-transcribed mRNA poly(A) tail shortening	0.00E+00
4	GO:0000291: nuclear-transcribed mRNA catabolic process, exonucleolytic	4.04E-05
5	GO:0030198: extracellular matrix organization	4.04E-05
6	GO:0043687: post-translational protein modification	4.04E-05
7	GO:0019673: GDP-mannose metabolic process	4.04E-05
8	GO:0080009: mRNA methylation	1.00E-04
9	GO:0031204: posttranslational protein targeting to membrane, translocation	1.00E-04
10	GO:0015804: neutral amino acid transport	1.00E-04
11	GO:0050684: regulation of mRNA processing	1.00E-04
12	GO:0007584: response to nutrient	1.00E-04
13	GO:0045948: positive regulation of translational initiation	1.00E-04
14	GO:0042351: 'de novo' GDP-L-fucose biosynthetic process	1.73E-04
15	GO:0032784: regulation of DNA-templated transcription, elongation	1.73E-04
16	GO:0051601: exocyst localization	2.55E-04
17	GO:0010107: potassium ion import	3.43E-04
18	GO:0018279: protein N-linked glycosylation via asparagine	4.37E-04
19	GO:0006574: valine catabolic process	5.37E-04
20	GO:0006751: glutathione catabolic process	5.37E-04
21	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	6.40E-04
22	GO:0006102: isocitrate metabolic process	8.61E-04
23	GO:0060321: acceptance of pollen	9.77E-04
24	GO:0006367: transcription initiation from RNA polymerase II promoter	9.77E-04
25	GO:0006098: pentose-phosphate shunt	1.10E-03
26	GO:0010018: far-red light signaling pathway	1.22E-03
27	GO:0006829: zinc II ion transport	1.77E-03
28	GO:0010102: lateral root morphogenesis	1.77E-03
29	GO:0009225: nucleotide-sugar metabolic process	2.07E-03
30	GO:0042753: positive regulation of circadian rhythm	2.23E-03
31	GO:0003333: amino acid transmembrane transport	2.72E-03
32	GO:0009306: protein secretion	3.24E-03
33	GO:0010089: xylem development	3.24E-03
34	GO:0010501: RNA secondary structure unwinding	3.61E-03
35	GO:0000413: protein peptidyl-prolyl isomerization	3.61E-03
36	GO:0010051: xylem and phloem pattern formation	3.61E-03
37	GO:0010118: stomatal movement	3.61E-03
38	GO:0006891: intra-Golgi vesicle-mediated transport	4.38E-03
39	GO:0009639: response to red or far red light	5.00E-03
40	GO:0006904: vesicle docking involved in exocytosis	5.21E-03
41	GO:0015031: protein transport	5.83E-03
42	GO:0016049: cell growth	6.54E-03
43	GO:0006397: mRNA processing	6.78E-03
44	GO:0048767: root hair elongation	7.01E-03
45	GO:0006865: amino acid transport	7.74E-03
46	GO:0016051: carbohydrate biosynthetic process	7.99E-03
47	GO:0006099: tricarboxylic acid cycle	8.24E-03
48	GO:0030001: metal ion transport	8.75E-03
49	GO:0006887: exocytosis	9.01E-03
50	GO:0009744: response to sucrose	9.53E-03
51	GO:0009846: pollen germination	1.12E-02
52	GO:0009585: red, far-red light phototransduction	1.18E-02
53	GO:0035556: intracellular signal transduction	1.22E-02
54	GO:0006457: protein folding	1.50E-02
55	GO:0018105: peptidyl-serine phosphorylation	1.54E-02
56	GO:0051726: regulation of cell cycle	1.57E-02
57	GO:0009742: brassinosteroid mediated signaling pathway	1.57E-02
58	GO:0000398: mRNA splicing, via spliceosome	1.67E-02
59	GO:0006508: proteolysis	1.79E-02
60	GO:0006413: translational initiation	2.12E-02
61	GO:0008380: RNA splicing	2.52E-02
62	GO:0010468: regulation of gene expression	2.52E-02
63	GO:0009826: unidimensional cell growth	2.95E-02
64	GO:0009860: pollen tube growth	3.20E-02
65	GO:0007049: cell cycle	3.28E-02
66	GO:0046777: protein autophosphorylation	3.71E-02
67	GO:0006886: intracellular protein transport	4.11E-02

Rank	GO Term	Adjusted P value
1	GO:0017168: 5-oxoprolinase (ATP-hydrolyzing) activity	0.00E+00
2	GO:0005201: extracellular matrix structural constituent	0.00E+00
3	GO:0008446: GDP-mannose 4,6-dehydratase activity	4.04E-05
4	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	4.04E-05
5	GO:0015172: acidic amino acid transmembrane transporter activity	1.00E-04
6	GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity	1.73E-04
7	GO:0070181: small ribosomal subunit rRNA binding	1.73E-04
8	GO:0008565: protein transporter activity	1.89E-04
9	GO:0015175: neutral amino acid transmembrane transporter activity	2.55E-04
10	GO:0004449: isocitrate dehydrogenase (NAD+) activity	2.55E-04
11	GO:0004576: oligosaccharyl transferase activity	3.43E-04
12	GO:0050378: UDP-glucuronate 4-epimerase activity	3.43E-04
13	GO:0004004: ATP-dependent RNA helicase activity	4.15E-04
14	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	4.37E-04
15	GO:0031369: translation initiation factor binding	5.37E-04
16	GO:0003730: mRNA 3'-UTR binding	6.40E-04
17	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	6.40E-04
18	GO:0005267: potassium channel activity	9.77E-04
19	GO:0015020: glucuronosyltransferase activity	1.35E-03
20	GO:0004176: ATP-dependent peptidase activity	2.72E-03
21	GO:0003727: single-stranded RNA binding	3.24E-03
22	GO:0046873: metal ion transmembrane transporter activity	3.80E-03
23	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	3.80E-03
24	GO:0050662: coenzyme binding	3.99E-03
25	GO:0008237: metallopeptidase activity	5.21E-03
26	GO:0008375: acetylglucosaminyltransferase activity	6.09E-03
27	GO:0009931: calcium-dependent protein serine/threonine kinase activity	6.09E-03
28	GO:0004683: calmodulin-dependent protein kinase activity	6.31E-03
29	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	6.54E-03
30	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	6.77E-03
31	GO:0004222: metalloendopeptidase activity	7.25E-03
32	GO:0003697: single-stranded DNA binding	7.99E-03
33	GO:0000149: SNARE binding	8.49E-03
34	GO:0043621: protein self-association	1.01E-02
35	GO:0015293: symporter activity	1.03E-02
36	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.06E-02
37	GO:0051287: NAD binding	1.09E-02
38	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.18E-02
39	GO:0015171: amino acid transmembrane transporter activity	1.26E-02
40	GO:0008026: ATP-dependent helicase activity	1.57E-02
41	GO:0003723: RNA binding	1.68E-02
42	GO:0005525: GTP binding	1.91E-02
43	GO:0003743: translation initiation factor activity	2.48E-02
44	GO:0003729: mRNA binding	3.49E-02
45	GO:0003924: GTPase activity	4.67E-02
46	GO:0016787: hydrolase activity	5.00E-02

Rank	GO Term	Adjusted P value
1	GO:0036396: MIS complex	0.00E+00
2	GO:0008250: oligosaccharyltransferase complex	4.37E-04
3	GO:0032040: small-subunit processome	1.63E-03
4	GO:0005665: DNA-directed RNA polymerase II, core complex	1.63E-03
5	GO:0005795: Golgi stack	2.07E-03
6	GO:0030176: integral component of endoplasmic reticulum membrane	2.07E-03
7	GO:0005744: mitochondrial inner membrane presequence translocase complex	3.24E-03
8	GO:0000145: exocyst	4.58E-03
9	GO:0032580: Golgi cisterna membrane	5.00E-03
10	GO:0000932: P-body	5.64E-03
11	GO:0005794: Golgi apparatus	6.24E-03
12	GO:0015934: large ribosomal subunit	7.49E-03
13	GO:0031902: late endosome membrane	9.01E-03
14	GO:0005856: cytoskeleton	1.03E-02
15	GO:0005681: spliceosomal complex	1.32E-02
16	GO:0016607: nuclear speck	1.35E-02
17	GO:0005783: endoplasmic reticulum	1.43E-02
18	GO:0005886: plasma membrane	1.84E-02
19	GO:0009524: phragmoplast	1.84E-02
20	GO:0005622: intracellular	2.06E-02
21	GO:0046658: anchored component of plasma membrane	2.72E-02
22	GO:0000139: Golgi membrane	3.18E-02
23	GO:0005789: endoplasmic reticulum membrane	3.58E-02
24	GO:0016021: integral component of membrane	4.54E-02
25	GO:0016020: membrane	4.91E-02