co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G47940

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006399: tRNA metabolic process	0.00E+00
2	GO:1900000: regulation of anthocyanin catabolic process	0.00E+00
3	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
4	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
5	GO:0016553: base conversion or substitution editing	0.00E+00
6	GO:0015995: chlorophyll biosynthetic process	1.88E-06
7	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.14E-05
8	GO:0009828: plant-type cell wall loosening	3.75E-05
9	GO:0006412: translation	5.86E-05
10	GO:0043489: RNA stabilization	8.09E-05
11	GO:0042371: vitamin K biosynthetic process	8.09E-05
12	GO:0009735: response to cytokinin	1.45E-04
13	GO:0006898: receptor-mediated endocytosis	1.93E-04
14	GO:0034755: iron ion transmembrane transport	1.93E-04
15	GO:0010541: acropetal auxin transport	1.93E-04
16	GO:0001736: establishment of planar polarity	1.93E-04
17	GO:0009664: plant-type cell wall organization	2.11E-04
18	GO:0015979: photosynthesis	2.91E-04
19	GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement	3.24E-04
20	GO:0010160: formation of animal organ boundary	3.24E-04
21	GO:0016045: detection of bacterium	3.24E-04
22	GO:0010359: regulation of anion channel activity	3.24E-04
23	GO:0045493: xylan catabolic process	3.24E-04
24	GO:0048443: stamen development	3.84E-04
25	GO:0043481: anthocyanin accumulation in tissues in response to UV light	4.66E-04
26	GO:2001141: regulation of RNA biosynthetic process	4.66E-04
27	GO:0009958: positive gravitropism	4.83E-04
28	GO:0010236: plastoquinone biosynthetic process	7.86E-04
29	GO:0006751: glutathione catabolic process	9.59E-04
30	GO:0000470: maturation of LSU-rRNA	9.59E-04
31	GO:0060918: auxin transport	9.59E-04
32	GO:0010311: lateral root formation	1.14E-03
33	GO:0042372: phylloquinone biosynthetic process	1.14E-03
34	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.14E-03
35	GO:0017148: negative regulation of translation	1.14E-03
36	GO:0009826: unidimensional cell growth	1.21E-03
37	GO:0009658: chloroplast organization	1.26E-03
38	GO:0042254: ribosome biogenesis	1.29E-03
39	GO:0009772: photosynthetic electron transport in photosystem II	1.34E-03
40	GO:1900056: negative regulation of leaf senescence	1.34E-03
41	GO:0009637: response to blue light	1.36E-03
42	GO:0042255: ribosome assembly	1.54E-03
43	GO:0006353: DNA-templated transcription, termination	1.54E-03
44	GO:0009690: cytokinin metabolic process	1.54E-03
45	GO:0030001: metal ion transport	1.55E-03
46	GO:0009926: auxin polar transport	1.74E-03
47	GO:0010114: response to red light	1.74E-03
48	GO:0071482: cellular response to light stimulus	1.76E-03
49	GO:0032544: plastid translation	1.76E-03
50	GO:0009051: pentose-phosphate shunt, oxidative branch	1.98E-03
51	GO:0009245: lipid A biosynthetic process	1.98E-03
52	GO:0010206: photosystem II repair	1.98E-03
53	GO:0009638: phototropism	2.22E-03
54	GO:0006949: syncytium formation	2.46E-03
55	GO:0048829: root cap development	2.46E-03
56	GO:0048765: root hair cell differentiation	2.71E-03
57	GO:0010015: root morphogenesis	2.71E-03
58	GO:0052544: defense response by callose deposition in cell wall	2.71E-03
59	GO:0006879: cellular iron ion homeostasis	2.71E-03
60	GO:0006352: DNA-templated transcription, initiation	2.71E-03
61	GO:0008361: regulation of cell size	2.97E-03
62	GO:0016024: CDP-diacylglycerol biosynthetic process	2.97E-03
63	GO:0010152: pollen maturation	2.97E-03
64	GO:2000012: regulation of auxin polar transport	3.24E-03
65	GO:0009785: blue light signaling pathway	3.24E-03
66	GO:0006006: glucose metabolic process	3.24E-03
67	GO:0010540: basipetal auxin transport	3.52E-03
68	GO:0010143: cutin biosynthetic process	3.52E-03
69	GO:0010207: photosystem II assembly	3.52E-03
70	GO:0009734: auxin-activated signaling pathway	4.17E-03
71	GO:0051017: actin filament bundle assembly	4.40E-03
72	GO:0003333: amino acid transmembrane transport	5.02E-03
73	GO:0009416: response to light stimulus	5.59E-03
74	GO:0042631: cellular response to water deprivation	6.70E-03
75	GO:0042335: cuticle development	6.70E-03
76	GO:0080022: primary root development	6.70E-03
77	GO:0008033: tRNA processing	6.70E-03
78	GO:0032502: developmental process	8.56E-03
79	GO:0016032: viral process	8.56E-03
80	GO:0009639: response to red or far red light	9.34E-03
81	GO:0010027: thylakoid membrane organization	1.06E-02
82	GO:0009627: systemic acquired resistance	1.14E-02
83	GO:0010411: xyloglucan metabolic process	1.19E-02
84	GO:0071555: cell wall organization	1.37E-02
85	GO:0010218: response to far red light	1.37E-02
86	GO:0009631: cold acclimation	1.41E-02
87	GO:0048527: lateral root development	1.41E-02
88	GO:0006865: amino acid transport	1.46E-02
89	GO:0045087: innate immune response	1.51E-02
90	GO:0032259: methylation	1.55E-02
91	GO:0009733: response to auxin	1.59E-02
92	GO:0008152: metabolic process	1.78E-02
93	GO:0009640: photomorphogenesis	1.80E-02
94	GO:0048316: seed development	2.57E-02
95	GO:0009624: response to nematode	2.87E-02
96	GO:0006396: RNA processing	2.93E-02
97	GO:0055085: transmembrane transport	3.64E-02
98	GO:0009790: embryo development	3.76E-02
99	GO:0009793: embryo development ending in seed dormancy	3.91E-02
100	GO:0006952: defense response	3.93E-02
101	GO:0006633: fatty acid biosynthetic process	3.96E-02
102	GO:0016036: cellular response to phosphate starvation	4.02E-02
103	GO:0007623: circadian rhythm	4.23E-02
104	GO:0045490: pectin catabolic process	4.23E-02
105	GO:0009451: RNA modification	4.30E-02
106	GO:0009739: response to gibberellin	4.58E-02
107	GO:0007166: cell surface receptor signaling pathway	4.65E-02
108	GO:0006470: protein dephosphorylation	4.65E-02
109	GO:0008380: RNA splicing	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
2	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
3	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
4	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
5	GO:0038198: auxin receptor activity	0.00E+00
6	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
7	GO:0019843: rRNA binding	1.41E-09
8	GO:0016851: magnesium chelatase activity	5.13E-09
9	GO:0005528: FK506 binding	6.64E-08
10	GO:0003735: structural constituent of ribosome	1.57E-06
11	GO:0010011: auxin binding	6.24E-06
12	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	9.53E-06
13	GO:0047807: cytokinin 7-beta-glucosyltransferase activity	8.09E-05
14	GO:0080062: cytokinin 9-beta-glucosyltransferase activity	8.09E-05
15	GO:0003839: gamma-glutamylcyclotransferase activity	1.93E-04
16	GO:0000822: inositol hexakisphosphate binding	1.93E-04
17	GO:0008097: 5S rRNA binding	4.66E-04
18	GO:0043023: ribosomal large subunit binding	4.66E-04
19	GO:0004659: prenyltransferase activity	6.21E-04
20	GO:0001053: plastid sigma factor activity	6.21E-04
21	GO:0004345: glucose-6-phosphate dehydrogenase activity	6.21E-04
22	GO:0016987: sigma factor activity	6.21E-04
23	GO:0010328: auxin influx transmembrane transporter activity	6.21E-04
24	GO:0009044: xylan 1,4-beta-xylosidase activity	6.21E-04
25	GO:0046556: alpha-L-arabinofuranosidase activity	6.21E-04
26	GO:0016791: phosphatase activity	7.13E-04
27	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	9.59E-04
28	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	9.59E-04
29	GO:0031177: phosphopantetheine binding	9.59E-04
30	GO:0000035: acyl binding	1.14E-03
31	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	1.54E-03
32	GO:0005381: iron ion transmembrane transporter activity	2.22E-03
33	GO:0031072: heat shock protein binding	3.24E-03
34	GO:0010329: auxin efflux transmembrane transporter activity	3.24E-03
35	GO:0008266: poly(U) RNA binding	3.52E-03
36	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	3.52E-03
37	GO:0016829: lyase activity	4.47E-03
38	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	5.30E-03
39	GO:0030570: pectate lyase activity	5.67E-03
40	GO:0003727: single-stranded RNA binding	6.01E-03
41	GO:0003756: protein disulfide isomerase activity	6.01E-03
42	GO:0008080: N-acetyltransferase activity	7.06E-03
43	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	7.22E-03
44	GO:0003723: RNA binding	7.61E-03
45	GO:0004518: nuclease activity	8.56E-03
46	GO:0051015: actin filament binding	8.94E-03
47	GO:0004871: signal transducer activity	1.37E-02
48	GO:0005215: transporter activity	1.56E-02
49	GO:0004712: protein serine/threonine/tyrosine kinase activity	1.60E-02
50	GO:0050661: NADP binding	1.65E-02
51	GO:0015293: symporter activity	1.96E-02
52	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.23E-02
53	GO:0003729: mRNA binding	2.26E-02
54	GO:0003690: double-stranded DNA binding	2.29E-02
55	GO:0015171: amino acid transmembrane transporter activity	2.40E-02
56	GO:0016887: ATPase activity	2.51E-02
57	GO:0080043: quercetin 3-O-glucosyltransferase activity	2.69E-02
58	GO:0080044: quercetin 7-O-glucosyltransferase activity	2.69E-02
59	GO:0004650: polygalacturonase activity	2.69E-02
60	GO:0051082: unfolded protein binding	2.87E-02
61	GO:0016746: transferase activity, transferring acyl groups	2.93E-02
62	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	3.78E-02
63	GO:0005524: ATP binding	4.08E-02
64	GO:0008194: UDP-glycosyltransferase activity	4.58E-02

Rank	GO Term	Adjusted P value
1	GO:0009570: chloroplast stroma	3.68E-18
2	GO:0009941: chloroplast envelope	9.46E-16
3	GO:0009507: chloroplast	1.08E-14
4	GO:0010007: magnesium chelatase complex	1.04E-09
5	GO:0009543: chloroplast thylakoid lumen	5.65E-08
6	GO:0031977: thylakoid lumen	1.39E-07
7	GO:0009579: thylakoid	1.64E-07
8	GO:0005840: ribosome	1.47E-06
9	GO:0005618: cell wall	1.28E-04
10	GO:0009534: chloroplast thylakoid	2.51E-04
11	GO:0009535: chloroplast thylakoid membrane	6.55E-04
12	GO:0009986: cell surface	1.34E-03
13	GO:0031969: chloroplast membrane	1.65E-03
14	GO:0016020: membrane	2.35E-03
15	GO:0090404: pollen tube tip	2.71E-03
16	GO:0000312: plastid small ribosomal subunit	3.52E-03
17	GO:0009505: plant-type cell wall	4.26E-03
18	GO:0009654: photosystem II oxygen evolving complex	4.70E-03
19	GO:0042651: thylakoid membrane	4.70E-03
20	GO:0015629: actin cytoskeleton	5.67E-03
21	GO:0019898: extrinsic component of membrane	7.79E-03
22	GO:0009295: nucleoid	9.75E-03
23	GO:0030529: intracellular ribonucleoprotein complex	1.06E-02
24	GO:0019005: SCF ubiquitin ligase complex	1.27E-02
25	GO:0000151: ubiquitin ligase complex	1.27E-02
26	GO:0015934: large ribosomal subunit	1.41E-02
27	GO:0005856: cytoskeleton	1.96E-02
28	GO:0010008: endosome membrane	2.57E-02
29	GO:0031225: anchored component of membrane	4.46E-02
30	GO:0005576: extracellular region	4.66E-02
31	GO:0005886: plasma membrane	4.81E-02