co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G47890

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010730: negative regulation of hydrogen peroxide biosynthetic process	0.00E+00
2	GO:0005997: xylulose metabolic process	0.00E+00
3	GO:0042906: xanthine transport	0.00E+00
4	GO:0044249: cellular biosynthetic process	0.00E+00
5	GO:0010219: regulation of vernalization response	0.00E+00
6	GO:0012502: induction of programmed cell death	0.00E+00
7	GO:0010478: chlororespiration	0.00E+00
8	GO:0010378: temperature compensation of the circadian clock	0.00E+00
9	GO:0030644: cellular chloride ion homeostasis	0.00E+00
10	GO:0009409: response to cold	1.31E-07
11	GO:0007623: circadian rhythm	1.73E-06
12	GO:0009415: response to water	5.93E-06
13	GO:0042542: response to hydrogen peroxide	1.20E-05
14	GO:0009737: response to abscisic acid	4.86E-05
15	GO:0009817: defense response to fungus, incompatible interaction	6.99E-05
16	GO:0000380: alternative mRNA splicing, via spliceosome	7.68E-05
17	GO:0009644: response to high light intensity	1.95E-04
18	GO:0098869: cellular oxidant detoxification	2.02E-04
19	GO:0009819: drought recovery	2.55E-04
20	GO:0006369: termination of RNA polymerase II transcription	2.68E-04
21	GO:0080065: 4-alpha-methyl-delta7-sterol oxidation	2.68E-04
22	GO:1902265: abscisic acid homeostasis	2.68E-04
23	GO:0015812: gamma-aminobutyric acid transport	2.68E-04
24	GO:0032958: inositol phosphate biosynthetic process	2.68E-04
25	GO:0009414: response to water deprivation	2.91E-04
26	GO:0010286: heat acclimation	4.36E-04
27	GO:0009970: cellular response to sulfate starvation	5.26E-04
28	GO:0006995: cellular response to nitrogen starvation	5.26E-04
29	GO:0015914: phospholipid transport	5.89E-04
30	GO:0015720: allantoin transport	5.89E-04
31	GO:0006883: cellular sodium ion homeostasis	5.89E-04
32	GO:0048833: specification of floral organ number	5.89E-04
33	GO:0015857: uracil transport	5.89E-04
34	GO:1902884: positive regulation of response to oxidative stress	5.89E-04
35	GO:0051170: nuclear import	5.89E-04
36	GO:0030003: cellular cation homeostasis	5.89E-04
37	GO:0010218: response to far red light	8.02E-04
38	GO:0009631: cold acclimation	8.52E-04
39	GO:0009637: response to blue light	9.53E-04
40	GO:0030029: actin filament-based process	9.55E-04
41	GO:0042256: mature ribosome assembly	9.55E-04
42	GO:0042344: indole glucosinolate catabolic process	9.55E-04
43	GO:0016255: attachment of GPI anchor to protein	9.55E-04
44	GO:1901562: response to paraquat	9.55E-04
45	GO:0071705: nitrogen compound transport	9.55E-04
46	GO:0006020: inositol metabolic process	1.36E-03
47	GO:0010601: positive regulation of auxin biosynthetic process	1.36E-03
48	GO:0015749: monosaccharide transport	1.36E-03
49	GO:1901332: negative regulation of lateral root development	1.36E-03
50	GO:0009269: response to desiccation	1.46E-03
51	GO:0006646: phosphatidylethanolamine biosynthetic process	1.83E-03
52	GO:0009687: abscisic acid metabolic process	1.83E-03
53	GO:0015743: malate transport	1.83E-03
54	GO:0048442: sepal development	1.83E-03
55	GO:0009765: photosynthesis, light harvesting	1.83E-03
56	GO:0022622: root system development	1.83E-03
57	GO:1901002: positive regulation of response to salt stress	1.83E-03
58	GO:1901409: positive regulation of phosphorylation of RNA polymerase II C-terminal domain	1.83E-03
59	GO:0010600: regulation of auxin biosynthetic process	1.83E-03
60	GO:0010508: positive regulation of autophagy	1.83E-03
61	GO:0051603: proteolysis involved in cellular protein catabolic process	1.99E-03
62	GO:0008284: positive regulation of cell proliferation	2.05E-03
63	GO:0009651: response to salt stress	2.11E-03
64	GO:0097428: protein maturation by iron-sulfur cluster transfer	2.33E-03
65	GO:0048578: positive regulation of long-day photoperiodism, flowering	2.33E-03
66	GO:0006656: phosphatidylcholine biosynthetic process	2.33E-03
67	GO:0043097: pyrimidine nucleoside salvage	2.33E-03
68	GO:0006970: response to osmotic stress	2.45E-03
69	GO:0006814: sodium ion transport	2.56E-03
70	GO:0045040: protein import into mitochondrial outer membrane	2.88E-03
71	GO:1900425: negative regulation of defense response to bacterium	2.88E-03
72	GO:0006206: pyrimidine nucleobase metabolic process	2.88E-03
73	GO:0000741: karyogamy	2.88E-03
74	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	3.46E-03
75	GO:0071470: cellular response to osmotic stress	3.46E-03
76	GO:0019509: L-methionine salvage from methylthioadenosine	3.46E-03
77	GO:0045737: positive regulation of cyclin-dependent protein serine/threonine kinase activity	3.46E-03
78	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	3.46E-03
79	GO:0045926: negative regulation of growth	3.46E-03
80	GO:0009416: response to light stimulus	3.54E-03
81	GO:0035556: intracellular signal transduction	3.89E-03
82	GO:0010038: response to metal ion	4.08E-03
83	GO:0010044: response to aluminum ion	4.08E-03
84	GO:0032880: regulation of protein localization	4.08E-03
85	GO:0048437: floral organ development	4.08E-03
86	GO:1900057: positive regulation of leaf senescence	4.08E-03
87	GO:0009645: response to low light intensity stimulus	4.08E-03
88	GO:0032508: DNA duplex unwinding	4.73E-03
89	GO:0010928: regulation of auxin mediated signaling pathway	4.73E-03
90	GO:0006491: N-glycan processing	4.73E-03
91	GO:0010099: regulation of photomorphogenesis	5.42E-03
92	GO:0009827: plant-type cell wall modification	5.42E-03
93	GO:0001510: RNA methylation	5.42E-03
94	GO:0007165: signal transduction	5.46E-03
95	GO:0009408: response to heat	5.50E-03
96	GO:0018298: protein-chromophore linkage	5.54E-03
97	GO:0000160: phosphorelay signal transduction system	5.82E-03
98	GO:0006811: ion transport	6.11E-03
99	GO:0046916: cellular transition metal ion homeostasis	6.14E-03
100	GO:0010043: response to zinc ion	6.40E-03
101	GO:0008202: steroid metabolic process	6.90E-03
102	GO:0005982: starch metabolic process	6.90E-03
103	GO:0030042: actin filament depolymerization	6.90E-03
104	GO:0048354: mucilage biosynthetic process involved in seed coat development	6.90E-03
105	GO:0045087: innate immune response	7.02E-03
106	GO:0009641: shade avoidance	7.68E-03
107	GO:0055062: phosphate ion homeostasis	7.68E-03
108	GO:0048441: petal development	7.68E-03
109	GO:0006816: calcium ion transport	8.50E-03
110	GO:0009682: induced systemic resistance	8.50E-03
111	GO:0052544: defense response by callose deposition in cell wall	8.50E-03
112	GO:0010114: response to red light	9.06E-03
113	GO:0016925: protein sumoylation	9.35E-03
114	GO:0008643: carbohydrate transport	9.81E-03
115	GO:0050826: response to freezing	1.02E-02
116	GO:0009718: anthocyanin-containing compound biosynthetic process	1.02E-02
117	GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process	1.02E-02
118	GO:2000012: regulation of auxin polar transport	1.02E-02
119	GO:0006626: protein targeting to mitochondrion	1.02E-02
120	GO:0009266: response to temperature stimulus	1.11E-02
121	GO:0048440: carpel development	1.11E-02
122	GO:0007034: vacuolar transport	1.11E-02
123	GO:0007015: actin filament organization	1.11E-02
124	GO:0009735: response to cytokinin	1.15E-02
125	GO:0010030: positive regulation of seed germination	1.21E-02
126	GO:0019853: L-ascorbic acid biosynthetic process	1.21E-02
127	GO:0071732: cellular response to nitric oxide	1.21E-02
128	GO:0009585: red, far-red light phototransduction	1.22E-02
129	GO:0006406: mRNA export from nucleus	1.40E-02
130	GO:0016575: histone deacetylation	1.50E-02
131	GO:0006874: cellular calcium ion homeostasis	1.50E-02
132	GO:0009695: jasmonic acid biosynthetic process	1.50E-02
133	GO:0009768: photosynthesis, light harvesting in photosystem I	1.50E-02
134	GO:0003333: amino acid transmembrane transport	1.61E-02
135	GO:0048511: rhythmic process	1.61E-02
136	GO:0010431: seed maturation	1.61E-02
137	GO:0019748: secondary metabolic process	1.71E-02
138	GO:0010017: red or far-red light signaling pathway	1.71E-02
139	GO:0045892: negative regulation of transcription, DNA-templated	1.76E-02
140	GO:0071369: cellular response to ethylene stimulus	1.82E-02
141	GO:0006012: galactose metabolic process	1.82E-02
142	GO:0009693: ethylene biosynthetic process	1.82E-02
143	GO:0071215: cellular response to abscisic acid stimulus	1.82E-02
144	GO:0055085: transmembrane transport	1.88E-02
145	GO:0048443: stamen development	1.94E-02
146	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.05E-02
147	GO:0010501: RNA secondary structure unwinding	2.17E-02
148	GO:0010051: xylem and phloem pattern formation	2.17E-02
149	GO:0042631: cellular response to water deprivation	2.17E-02
150	GO:0000226: microtubule cytoskeleton organization	2.17E-02
151	GO:0042391: regulation of membrane potential	2.17E-02
152	GO:0080022: primary root development	2.17E-02
153	GO:0010197: polar nucleus fusion	2.29E-02
154	GO:0046323: glucose import	2.29E-02
155	GO:0009958: positive gravitropism	2.29E-02
156	GO:0071472: cellular response to salt stress	2.29E-02
157	GO:0042752: regulation of circadian rhythm	2.41E-02
158	GO:0042744: hydrogen peroxide catabolic process	2.49E-02
159	GO:0008654: phospholipid biosynthetic process	2.53E-02
160	GO:0009556: microsporogenesis	2.53E-02
161	GO:0046686: response to cadmium ion	2.58E-02
162	GO:0006635: fatty acid beta-oxidation	2.65E-02
163	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.65E-02
164	GO:0016036: cellular response to phosphate starvation	2.82E-02
165	GO:0006413: translational initiation	2.82E-02
166	GO:1901657: glycosyl compound metabolic process	2.91E-02
167	GO:0071281: cellular response to iron ion	2.91E-02
168	GO:0006914: autophagy	3.04E-02
169	GO:0019760: glucosinolate metabolic process	3.04E-02
170	GO:0010228: vegetative to reproductive phase transition of meristem	3.16E-02
171	GO:0016126: sterol biosynthetic process	3.45E-02
172	GO:0009911: positive regulation of flower development	3.45E-02
173	GO:0010029: regulation of seed germination	3.59E-02
174	GO:0010468: regulation of gene expression	3.60E-02
175	GO:0009617: response to bacterium	3.60E-02
176	GO:0042742: defense response to bacterium	3.73E-02
177	GO:0048573: photoperiodism, flowering	3.88E-02
178	GO:0006950: response to stress	3.88E-02
179	GO:0015995: chlorophyll biosynthetic process	3.88E-02
180	GO:0009908: flower development	4.04E-02
181	GO:0009738: abscisic acid-activated signaling pathway	4.39E-02
182	GO:0048527: lateral root development	4.62E-02
183	GO:0010119: regulation of stomatal movement	4.62E-02
184	GO:0016051: carbohydrate biosynthetic process	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
2	GO:0016428: tRNA (cytosine-5-)-methyltransferase activity	0.00E+00
3	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
4	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
5	GO:0005272: sodium channel activity	0.00E+00
6	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
7	GO:0042907: xanthine transmembrane transporter activity	0.00E+00
8	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
9	GO:0047787: delta4-3-oxosteroid 5beta-reductase activity	0.00E+00
10	GO:0080082: esculin beta-glucosidase activity	0.00E+00
11	GO:0046523: S-methyl-5-thioribose-1-phosphate isomerase activity	0.00E+00
12	GO:0005358: high-affinity hydrogen:glucose symporter activity	0.00E+00
13	GO:0004567: beta-mannosidase activity	0.00E+00
14	GO:0004096: catalase activity	1.18E-05
15	GO:0005253: anion channel activity	4.83E-05
16	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	2.68E-04
17	GO:0009679: hexose:proton symporter activity	2.68E-04
18	GO:0035671: enone reductase activity	2.68E-04
19	GO:0000829: inositol heptakisphosphate kinase activity	2.68E-04
20	GO:0080079: cellobiose glucosidase activity	2.68E-04
21	GO:0008692: 3-hydroxybutyryl-CoA epimerase activity	2.68E-04
22	GO:0046870: cadmium ion binding	2.68E-04
23	GO:0004856: xylulokinase activity	2.68E-04
24	GO:0000828: inositol hexakisphosphate kinase activity	2.68E-04
25	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	2.68E-04
26	GO:0015185: gamma-aminobutyric acid transmembrane transporter activity	2.68E-04
27	GO:0015180: L-alanine transmembrane transporter activity	5.89E-04
28	GO:0001047: core promoter binding	5.89E-04
29	GO:0032791: lead ion binding	5.89E-04
30	GO:0005274: allantoin uptake transmembrane transporter activity	5.89E-04
31	GO:0004609: phosphatidylserine decarboxylase activity	5.89E-04
32	GO:0047216: inositol 3-alpha-galactosyltransferase activity	5.89E-04
33	GO:0003857: 3-hydroxyacyl-CoA dehydrogenase activity	5.89E-04
34	GO:0004839: ubiquitin activating enzyme activity	5.89E-04
35	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	5.89E-04
36	GO:0019948: SUMO activating enzyme activity	9.55E-04
37	GO:0017150: tRNA dihydrouridine synthase activity	9.55E-04
38	GO:0005351: sugar:proton symporter activity	1.09E-03
39	GO:0004165: dodecenoyl-CoA delta-isomerase activity	1.36E-03
40	GO:0004300: enoyl-CoA hydratase activity	1.36E-03
41	GO:0015189: L-lysine transmembrane transporter activity	1.36E-03
42	GO:0000254: C-4 methylsterol oxidase activity	1.36E-03
43	GO:0015181: arginine transmembrane transporter activity	1.36E-03
44	GO:0015210: uracil transmembrane transporter activity	1.83E-03
45	GO:0005313: L-glutamate transmembrane transporter activity	1.83E-03
46	GO:0008526: phosphatidylinositol transporter activity	1.83E-03
47	GO:0010294: abscisic acid glucosyltransferase activity	2.33E-03
48	GO:0015145: monosaccharide transmembrane transporter activity	2.33E-03
49	GO:0008641: small protein activating enzyme activity	2.33E-03
50	GO:0045300: acyl-[acyl-carrier-protein] desaturase activity	2.33E-03
51	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.33E-03
52	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	2.33E-03
53	GO:0005247: voltage-gated chloride channel activity	2.88E-03
54	GO:2001070: starch binding	2.88E-03
55	GO:0004629: phospholipase C activity	2.88E-03
56	GO:0015562: efflux transmembrane transporter activity	2.88E-03
57	GO:0019137: thioglucosidase activity	2.88E-03
58	GO:0000293: ferric-chelate reductase activity	2.88E-03
59	GO:0004197: cysteine-type endopeptidase activity	3.14E-03
60	GO:0000156: phosphorelay response regulator activity	3.35E-03
61	GO:0004849: uridine kinase activity	3.46E-03
62	GO:0070300: phosphatidic acid binding	3.46E-03
63	GO:0004602: glutathione peroxidase activity	3.46E-03
64	GO:0005261: cation channel activity	3.46E-03
65	GO:0004435: phosphatidylinositol phospholipase C activity	3.46E-03
66	GO:0009881: photoreceptor activity	4.08E-03
67	GO:0015140: malate transmembrane transporter activity	4.08E-03
68	GO:0005515: protein binding	4.27E-03
69	GO:0004033: aldo-keto reductase (NADP) activity	4.73E-03
70	GO:0004525: ribonuclease III activity	4.73E-03
71	GO:0015144: carbohydrate transmembrane transporter activity	4.99E-03
72	GO:0102483: scopolin beta-glucosidase activity	5.00E-03
73	GO:0005267: potassium channel activity	5.42E-03
74	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	5.42E-03
75	GO:0008308: voltage-gated anion channel activity	5.42E-03
76	GO:0001104: RNA polymerase II transcription cofactor activity	5.42E-03
77	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	6.14E-03
78	GO:0000989: transcription factor activity, transcription factor binding	6.14E-03
79	GO:0050897: cobalt ion binding	6.40E-03
80	GO:0008422: beta-glucosidase activity	7.67E-03
81	GO:0005315: inorganic phosphate transmembrane transporter activity	1.02E-02
82	GO:0005262: calcium channel activity	1.02E-02
83	GO:0004565: beta-galactosidase activity	1.02E-02
84	GO:0031624: ubiquitin conjugating enzyme binding	1.11E-02
85	GO:0008083: growth factor activity	1.11E-02
86	GO:0030552: cAMP binding	1.21E-02
87	GO:0030553: cGMP binding	1.21E-02
88	GO:0004970: ionotropic glutamate receptor activity	1.21E-02
89	GO:0005217: intracellular ligand-gated ion channel activity	1.21E-02
90	GO:0031409: pigment binding	1.30E-02
91	GO:0008234: cysteine-type peptidase activity	1.36E-02
92	GO:0051536: iron-sulfur cluster binding	1.40E-02
93	GO:0004407: histone deacetylase activity	1.40E-02
94	GO:0051087: chaperone binding	1.50E-02
95	GO:0005216: ion channel activity	1.50E-02
96	GO:0008324: cation transmembrane transporter activity	1.50E-02
97	GO:0019706: protein-cysteine S-palmitoyltransferase activity	1.61E-02
98	GO:0004707: MAP kinase activity	1.61E-02
99	GO:0008514: organic anion transmembrane transporter activity	1.94E-02
100	GO:0005249: voltage-gated potassium channel activity	2.17E-02
101	GO:0030551: cyclic nucleotide binding	2.17E-02
102	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.25E-02
103	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	2.29E-02
104	GO:0016853: isomerase activity	2.41E-02
105	GO:0016301: kinase activity	2.72E-02
106	GO:0015297: antiporter activity	2.88E-02
107	GO:0005200: structural constituent of cytoskeleton	3.18E-02
108	GO:0005509: calcium ion binding	3.32E-02
109	GO:0003743: translation initiation factor activity	3.53E-02
110	GO:0016168: chlorophyll binding	3.59E-02
111	GO:0030247: polysaccharide binding	3.88E-02
112	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.17E-02
113	GO:0005096: GTPase activator activity	4.32E-02
114	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	4.47E-02
115	GO:0003697: single-stranded DNA binding	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0005851: eukaryotic translation initiation factor 2B complex	1.12E-04
2	GO:0005777: peroxisome	3.08E-04
3	GO:0016021: integral component of membrane	4.13E-04
4	GO:0043036: starch grain	5.89E-04
5	GO:0005764: lysosome	8.84E-04
6	GO:0042765: GPI-anchor transamidase complex	9.55E-04
7	GO:0000323: lytic vacuole	1.36E-03
8	GO:0009898: cytoplasmic side of plasma membrane	1.83E-03
9	GO:0032586: protein storage vacuole membrane	1.83E-03
10	GO:0070847: core mediator complex	2.88E-03
11	GO:0034707: chloride channel complex	2.88E-03
12	GO:0000815: ESCRT III complex	3.46E-03
13	GO:0005886: plasma membrane	4.53E-03
14	GO:0000326: protein storage vacuole	5.42E-03
15	GO:0000307: cyclin-dependent protein kinase holoenzyme complex	5.42E-03
16	GO:0005742: mitochondrial outer membrane translocase complex	5.42E-03
17	GO:0005615: extracellular space	6.90E-03
18	GO:0005618: cell wall	8.46E-03
19	GO:0031307: integral component of mitochondrial outer membrane	9.35E-03
20	GO:0031966: mitochondrial membrane	1.14E-02
21	GO:0030076: light-harvesting complex	1.21E-02
22	GO:0005741: mitochondrial outer membrane	1.61E-02
23	GO:0015629: actin cytoskeleton	1.82E-02
24	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.94E-02
25	GO:0010287: plastoglobule	2.07E-02
26	GO:0016020: membrane	2.08E-02
27	GO:0009522: photosystem I	2.41E-02
28	GO:0009523: photosystem II	2.53E-02
29	GO:0031965: nuclear membrane	2.53E-02
30	GO:0016592: mediator complex	2.78E-02
31	GO:0009941: chloroplast envelope	3.02E-02
32	GO:0009705: plant-type vacuole membrane	3.02E-02
33	GO:0009507: chloroplast	3.26E-02
34	GO:0005667: transcription factor complex	3.73E-02
35	GO:0000151: ubiquitin ligase complex	4.17E-02
36	GO:0022626: cytosolic ribosome	4.33E-02
37	GO:0000786: nucleosome	4.77E-02