co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G47650

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2000541: positive regulation of protein geranylgeranylation	0.00E+00
2	GO:0000188: inactivation of MAPK activity	0.00E+00
3	GO:0045185: maintenance of protein location	0.00E+00
4	GO:0017126: nucleologenesis	0.00E+00
5	GO:0009991: response to extracellular stimulus	0.00E+00
6	GO:0032780: negative regulation of ATPase activity	0.00E+00
7	GO:0010111: glyoxysome organization	0.00E+00
8	GO:0017186: peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase	0.00E+00
9	GO:0046109: uridine biosynthetic process	0.00E+00
10	GO:0010107: potassium ion import	3.00E-05
11	GO:0006014: D-ribose metabolic process	7.11E-05
12	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	7.11E-05
13	GO:0046686: response to cadmium ion	7.87E-05
14	GO:0006102: isocitrate metabolic process	1.67E-04
15	GO:0006750: glutathione biosynthetic process	2.02E-04
16	GO:0034620: cellular response to unfolded protein	2.02E-04
17	GO:0080120: CAAX-box protein maturation	2.02E-04
18	GO:0035266: meristem growth	2.02E-04
19	GO:0071586: CAAX-box protein processing	2.02E-04
20	GO:0007292: female gamete generation	2.02E-04
21	GO:0006431: methionyl-tRNA aminoacylation	2.02E-04
22	GO:0006422: aspartyl-tRNA aminoacylation	2.02E-04
23	GO:0009699: phenylpropanoid biosynthetic process	2.08E-04
24	GO:0048829: root cap development	3.54E-04
25	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	4.52E-04
26	GO:0051258: protein polymerization	4.52E-04
27	GO:0034398: telomere tethering at nuclear periphery	4.52E-04
28	GO:0034243: regulation of transcription elongation from RNA polymerase II promoter	4.52E-04
29	GO:0019395: fatty acid oxidation	4.52E-04
30	GO:0007584: response to nutrient	4.52E-04
31	GO:0051788: response to misfolded protein	4.52E-04
32	GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process	5.33E-04
33	GO:0006099: tricarboxylic acid cycle	6.10E-04
34	GO:0002230: positive regulation of defense response to virus by host	7.36E-04
35	GO:0060968: regulation of gene silencing	7.36E-04
36	GO:0032786: positive regulation of DNA-templated transcription, elongation	7.36E-04
37	GO:0000162: tryptophan biosynthetic process	7.47E-04
38	GO:0000209: protein polyubiquitination	8.34E-04
39	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	1.01E-03
40	GO:1902290: positive regulation of defense response to oomycetes	1.05E-03
41	GO:0000973: posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery	1.05E-03
42	GO:2000114: regulation of establishment of cell polarity	1.05E-03
43	GO:0043207: response to external biotic stimulus	1.05E-03
44	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.05E-03
45	GO:0072583: clathrin-dependent endocytosis	1.05E-03
46	GO:0030433: ubiquitin-dependent ERAD pathway	1.08E-03
47	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.38E-03
48	GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway	1.40E-03
49	GO:0006542: glutamine biosynthetic process	1.40E-03
50	GO:0070534: protein K63-linked ubiquitination	1.40E-03
51	GO:1902584: positive regulation of response to water deprivation	1.40E-03
52	GO:0042273: ribosomal large subunit biogenesis	1.40E-03
53	GO:0006096: glycolytic process	1.41E-03
54	GO:0007029: endoplasmic reticulum organization	1.78E-03
55	GO:0045116: protein neddylation	1.78E-03
56	GO:0018344: protein geranylgeranylation	1.78E-03
57	GO:0010225: response to UV-C	1.78E-03
58	GO:0019252: starch biosynthetic process	1.85E-03
59	GO:0010583: response to cyclopentenone	2.11E-03
60	GO:0006301: postreplication repair	2.19E-03
61	GO:0048827: phyllome development	2.19E-03
62	GO:0048232: male gamete generation	2.19E-03
63	GO:0043248: proteasome assembly	2.19E-03
64	GO:0006886: intracellular protein transport	2.26E-03
65	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	2.63E-03
66	GO:0009423: chorismate biosynthetic process	2.63E-03
67	GO:1900057: positive regulation of leaf senescence	3.09E-03
68	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	3.09E-03
69	GO:0006491: N-glycan processing	3.59E-03
70	GO:0048766: root hair initiation	3.59E-03
71	GO:0006605: protein targeting	3.59E-03
72	GO:0019375: galactolipid biosynthetic process	3.59E-03
73	GO:0006506: GPI anchor biosynthetic process	3.59E-03
74	GO:0010078: maintenance of root meristem identity	3.59E-03
75	GO:0030091: protein repair	3.59E-03
76	GO:0006499: N-terminal protein myristoylation	4.08E-03
77	GO:0007389: pattern specification process	4.10E-03
78	GO:0030968: endoplasmic reticulum unfolded protein response	4.10E-03
79	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	4.12E-03
80	GO:0034765: regulation of ion transmembrane transport	4.65E-03
81	GO:0090333: regulation of stomatal closure	4.65E-03
82	GO:0006098: pentose-phosphate shunt	4.65E-03
83	GO:0090305: nucleic acid phosphodiester bond hydrolysis	4.65E-03
84	GO:0009734: auxin-activated signaling pathway	4.99E-03
85	GO:0008202: steroid metabolic process	5.21E-03
86	GO:1900426: positive regulation of defense response to bacterium	5.21E-03
87	GO:0010018: far-red light signaling pathway	5.21E-03
88	GO:2000280: regulation of root development	5.21E-03
89	GO:0009870: defense response signaling pathway, resistance gene-dependent	5.80E-03
90	GO:0006325: chromatin organization	5.80E-03
91	GO:0007064: mitotic sister chromatid cohesion	5.80E-03
92	GO:0006468: protein phosphorylation	6.18E-03
93	GO:0072593: reactive oxygen species metabolic process	6.41E-03
94	GO:0009073: aromatic amino acid family biosynthetic process	6.41E-03
95	GO:0030148: sphingolipid biosynthetic process	6.41E-03
96	GO:0010015: root morphogenesis	6.41E-03
97	GO:0009698: phenylpropanoid metabolic process	6.41E-03
98	GO:0009738: abscisic acid-activated signaling pathway	6.75E-03
99	GO:0009965: leaf morphogenesis	6.78E-03
100	GO:0045037: protein import into chloroplast stroma	7.04E-03
101	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	7.04E-03
102	GO:0000266: mitochondrial fission	7.04E-03
103	GO:0055046: microgametogenesis	7.70E-03
104	GO:0006094: gluconeogenesis	7.70E-03
105	GO:0006813: potassium ion transport	8.14E-03
106	GO:0009933: meristem structural organization	8.37E-03
107	GO:0009887: animal organ morphogenesis	8.37E-03
108	GO:0034605: cellular response to heat	8.37E-03
109	GO:0010224: response to UV-B	8.43E-03
110	GO:0010039: response to iron ion	9.07E-03
111	GO:0090351: seedling development	9.07E-03
112	GO:0010053: root epidermal cell differentiation	9.07E-03
113	GO:0009969: xyloglucan biosynthetic process	9.07E-03
114	GO:0034976: response to endoplasmic reticulum stress	9.79E-03
115	GO:0042753: positive regulation of circadian rhythm	9.79E-03
116	GO:0006406: mRNA export from nucleus	1.05E-02
117	GO:0009695: jasmonic acid biosynthetic process	1.13E-02
118	GO:0006511: ubiquitin-dependent protein catabolic process	1.13E-02
119	GO:0051302: regulation of cell division	1.13E-02
120	GO:0031408: oxylipin biosynthetic process	1.21E-02
121	GO:0016226: iron-sulfur cluster assembly	1.29E-02
122	GO:0007131: reciprocal meiotic recombination	1.29E-02
123	GO:0006012: galactose metabolic process	1.37E-02
124	GO:0071215: cellular response to abscisic acid stimulus	1.37E-02
125	GO:0006397: mRNA processing	1.42E-02
126	GO:0048364: root development	1.42E-02
127	GO:0009561: megagametogenesis	1.45E-02
128	GO:0070417: cellular response to cold	1.54E-02
129	GO:0051028: mRNA transport	1.54E-02
130	GO:0008284: positive regulation of cell proliferation	1.54E-02
131	GO:0042391: regulation of membrane potential	1.62E-02
132	GO:0010118: stomatal movement	1.62E-02
133	GO:0006606: protein import into nucleus	1.62E-02
134	GO:0006885: regulation of pH	1.71E-02
135	GO:0010154: fruit development	1.71E-02
136	GO:0048544: recognition of pollen	1.80E-02
137	GO:0006633: fatty acid biosynthetic process	1.83E-02
138	GO:0008654: phospholipid biosynthetic process	1.89E-02
139	GO:0009414: response to water deprivation	1.98E-02
140	GO:0000302: response to reactive oxygen species	1.99E-02
141	GO:0010193: response to ozone	1.99E-02
142	GO:0006635: fatty acid beta-oxidation	1.99E-02
143	GO:0080156: mitochondrial mRNA modification	1.99E-02
144	GO:0032502: developmental process	2.08E-02
145	GO:0007264: small GTPase mediated signal transduction	2.08E-02
146	GO:0006914: autophagy	2.28E-02
147	GO:0009639: response to red or far red light	2.28E-02
148	GO:0010252: auxin homeostasis	2.28E-02
149	GO:0010468: regulation of gene expression	2.40E-02
150	GO:0009733: response to auxin	2.44E-02
151	GO:0009735: response to cytokinin	2.48E-02
152	GO:0001666: response to hypoxia	2.58E-02
153	GO:0016126: sterol biosynthetic process	2.58E-02
154	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	2.69E-02
155	GO:0042128: nitrate assimilation	2.80E-02
156	GO:0015031: protein transport	2.93E-02
157	GO:0030244: cellulose biosynthetic process	3.12E-02
158	GO:0009817: defense response to fungus, incompatible interaction	3.12E-02
159	GO:0010311: lateral root formation	3.23E-02
160	GO:0048767: root hair elongation	3.23E-02
161	GO:0009631: cold acclimation	3.46E-02
162	GO:0007568: aging	3.46E-02
163	GO:0009910: negative regulation of flower development	3.46E-02
164	GO:0048527: lateral root development	3.46E-02
165	GO:0016051: carbohydrate biosynthetic process	3.69E-02
166	GO:0009867: jasmonic acid mediated signaling pathway	3.69E-02
167	GO:0045087: innate immune response	3.69E-02
168	GO:0034599: cellular response to oxidative stress	3.81E-02
169	GO:0006457: protein folding	3.81E-02
170	GO:0080167: response to karrikin	3.86E-02
171	GO:0006508: proteolysis	4.03E-02
172	GO:0006897: endocytosis	4.18E-02

Rank	GO Term	Adjusted P value
1	GO:0004363: glutathione synthase activity	0.00E+00
2	GO:0005092: GDP-dissociation inhibitor activity	0.00E+00
3	GO:0070191: methionine-R-sulfoxide reductase activity	0.00E+00
4	GO:0042030: ATPase inhibitor activity	0.00E+00
5	GO:0016603: glutaminyl-peptide cyclotransferase activity	0.00E+00
6	GO:0017017: MAP kinase tyrosine/serine/threonine phosphatase activity	0.00E+00
7	GO:0050269: coniferyl-aldehyde dehydrogenase activity	0.00E+00
8	GO:0003856: 3-dehydroquinate synthase activity	0.00E+00
9	GO:0046424: ferulate 5-hydroxylase activity	0.00E+00
10	GO:0004631: phosphomevalonate kinase activity	0.00E+00
11	GO:0016857: racemase and epimerase activity, acting on carbohydrates and derivatives	0.00E+00
12	GO:0005524: ATP binding	4.22E-06
13	GO:0036402: proteasome-activating ATPase activity	7.11E-05
14	GO:0004029: aldehyde dehydrogenase (NAD) activity	7.11E-05
15	GO:0004747: ribokinase activity	9.88E-05
16	GO:0008865: fructokinase activity	1.67E-04
17	GO:0000386: second spliceosomal transesterification activity	2.02E-04
18	GO:0004825: methionine-tRNA ligase activity	2.02E-04
19	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	2.02E-04
20	GO:0004425: indole-3-glycerol-phosphate synthase activity	2.02E-04
21	GO:0004815: aspartate-tRNA ligase activity	2.02E-04
22	GO:0008802: betaine-aldehyde dehydrogenase activity	2.02E-04
23	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	3.01E-04
24	GO:0061630: ubiquitin protein ligase activity	3.44E-04
25	GO:0005543: phospholipid binding	4.10E-04
26	GO:0003988: acetyl-CoA C-acyltransferase activity	4.52E-04
27	GO:0004450: isocitrate dehydrogenase (NADP+) activity	4.52E-04
28	GO:0003958: NADPH-hemoprotein reductase activity	4.52E-04
29	GO:0019781: NEDD8 activating enzyme activity	4.52E-04
30	GO:0004750: ribulose-phosphate 3-epimerase activity	4.52E-04
31	GO:0045140: inositol phosphoceramide synthase activity	4.52E-04
32	GO:0031624: ubiquitin conjugating enzyme binding	6.01E-04
33	GO:0017025: TBP-class protein binding	6.71E-04
34	GO:0070181: small ribosomal subunit rRNA binding	7.36E-04
35	GO:0004751: ribose-5-phosphate isomerase activity	7.36E-04
36	GO:0005093: Rab GDP-dissociation inhibitor activity	7.36E-04
37	GO:0004324: ferredoxin-NADP+ reductase activity	7.36E-04
38	GO:0005047: signal recognition particle binding	7.36E-04
39	GO:0004449: isocitrate dehydrogenase (NAD+) activity	1.05E-03
40	GO:0035198: miRNA binding	1.05E-03
41	GO:0004571: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity	1.05E-03
42	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.05E-03
43	GO:0003727: single-stranded RNA binding	1.28E-03
44	GO:0000993: RNA polymerase II core binding	1.40E-03
45	GO:0004834: tryptophan synthase activity	1.40E-03
46	GO:0030276: clathrin binding	1.61E-03
47	GO:0016853: isomerase activity	1.72E-03
48	GO:0017137: Rab GTPase binding	1.78E-03
49	GO:0004356: glutamate-ammonia ligase activity	1.78E-03
50	GO:0008641: small protein activating enzyme activity	1.78E-03
51	GO:0004332: fructose-bisphosphate aldolase activity	2.19E-03
52	GO:0004559: alpha-mannosidase activity	2.63E-03
53	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	2.63E-03
54	GO:0005242: inward rectifier potassium channel activity	2.63E-03
55	GO:0008195: phosphatidate phosphatase activity	2.63E-03
56	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.63E-03
57	GO:0003924: GTPase activity	2.97E-03
58	GO:0008565: protein transporter activity	2.98E-03
59	GO:0008143: poly(A) binding	3.09E-03
60	GO:0005507: copper ion binding	3.22E-03
61	GO:0017056: structural constituent of nuclear pore	3.59E-03
62	GO:0015288: porin activity	3.59E-03
63	GO:0004034: aldose 1-epimerase activity	3.59E-03
64	GO:0005096: GTPase activator activity	3.89E-03
65	GO:0004222: metalloendopeptidase activity	4.08E-03
66	GO:0008142: oxysterol binding	4.10E-03
67	GO:0005267: potassium channel activity	4.10E-03
68	GO:0005487: nucleocytoplasmic transporter activity	5.21E-03
69	GO:0030955: potassium ion binding	5.21E-03
70	GO:0004743: pyruvate kinase activity	5.21E-03
71	GO:0004713: protein tyrosine kinase activity	5.80E-03
72	GO:0000049: tRNA binding	7.04E-03
73	GO:0000166: nucleotide binding	7.09E-03
74	GO:0008139: nuclear localization sequence binding	7.70E-03
75	GO:0004175: endopeptidase activity	8.37E-03
76	GO:0016301: kinase activity	8.74E-03
77	GO:0004725: protein tyrosine phosphatase activity	9.79E-03
78	GO:0051536: iron-sulfur cluster binding	1.05E-02
79	GO:0043130: ubiquitin binding	1.05E-02
80	GO:0051087: chaperone binding	1.13E-02
81	GO:0016746: transferase activity, transferring acyl groups	1.20E-02
82	GO:0008408: 3'-5' exonuclease activity	1.21E-02
83	GO:0004674: protein serine/threonine kinase activity	1.43E-02
84	GO:0003756: protein disulfide isomerase activity	1.45E-02
85	GO:0005451: monovalent cation:proton antiporter activity	1.62E-02
86	GO:0030551: cyclic nucleotide binding	1.62E-02
87	GO:0010181: FMN binding	1.80E-02
88	GO:0015299: solute:proton antiporter activity	1.80E-02
89	GO:0005515: protein binding	2.07E-02
90	GO:0015385: sodium:proton antiporter activity	2.18E-02
91	GO:0016791: phosphatase activity	2.28E-02
92	GO:0016887: ATPase activity	2.34E-02
93	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	2.56E-02
94	GO:0009931: calcium-dependent protein serine/threonine kinase activity	2.80E-02
95	GO:0030247: polysaccharide binding	2.90E-02
96	GO:0004683: calmodulin-dependent protein kinase activity	2.90E-02
97	GO:0004806: triglyceride lipase activity	2.90E-02
98	GO:0004721: phosphoprotein phosphatase activity	2.90E-02
99	GO:0008168: methyltransferase activity	3.00E-02
100	GO:0008236: serine-type peptidase activity	3.01E-02
101	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	3.01E-02
102	GO:0000287: magnesium ion binding	3.06E-02
103	GO:0016491: oxidoreductase activity	3.08E-02
104	GO:0030145: manganese ion binding	3.46E-02
105	GO:0003729: mRNA binding	3.68E-02
106	GO:0003746: translation elongation factor activity	3.69E-02
107	GO:0003697: single-stranded DNA binding	3.69E-02
108	GO:0008233: peptidase activity	3.79E-02
109	GO:0008422: beta-glucosidase activity	3.93E-02
110	GO:0004712: protein serine/threonine/tyrosine kinase activity	3.93E-02
111	GO:0051539: 4 iron, 4 sulfur cluster binding	4.05E-02
112	GO:0050661: NADP binding	4.05E-02
113	GO:0005516: calmodulin binding	4.58E-02
114	GO:0043621: protein self-association	4.68E-02
115	GO:0035091: phosphatidylinositol binding	4.68E-02
116	GO:0005198: structural molecule activity	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0005785: signal recognition particle receptor complex	0.00E+00
2	GO:0005829: cytosol	9.07E-11
3	GO:0031595: nuclear proteasome complex	1.92E-06
4	GO:0005783: endoplasmic reticulum	7.00E-05
5	GO:0005886: plasma membrane	7.16E-05
6	GO:0031597: cytosolic proteasome complex	9.88E-05
7	GO:0000502: proteasome complex	1.42E-04
8	GO:0032044: DSIF complex	2.02E-04
9	GO:0045334: clathrin-coated endocytic vesicle	2.02E-04
10	GO:0045252: oxoglutarate dehydrogenase complex	2.02E-04
11	GO:0008540: proteasome regulatory particle, base subcomplex	3.01E-04
12	GO:0045254: pyruvate dehydrogenase complex	4.52E-04
13	GO:0044614: nuclear pore cytoplasmic filaments	7.36E-04
14	GO:0005968: Rab-protein geranylgeranyltransferase complex	1.05E-03
15	GO:0031372: UBC13-MMS2 complex	1.40E-03
16	GO:0030126: COPI vesicle coat	1.78E-03
17	GO:0005777: peroxisome	2.20E-03
18	GO:0005737: cytoplasm	2.61E-03
19	GO:0016272: prefoldin complex	2.63E-03
20	GO:0030687: preribosome, large subunit precursor	3.09E-03
21	GO:0034399: nuclear periphery	3.59E-03
22	GO:0000151: ubiquitin ligase complex	3.71E-03
23	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	4.10E-03
24	GO:0009514: glyoxysome	4.10E-03
25	GO:0016020: membrane	4.47E-03
26	GO:0010494: cytoplasmic stress granule	4.65E-03
27	GO:0030125: clathrin vesicle coat	5.80E-03
28	GO:0008541: proteasome regulatory particle, lid subcomplex	6.41E-03
29	GO:0032040: small-subunit processome	7.04E-03
30	GO:0005750: mitochondrial respiratory chain complex III	8.37E-03
31	GO:0030176: integral component of endoplasmic reticulum membrane	9.07E-03
32	GO:0005905: clathrin-coated pit	1.21E-02
33	GO:0005789: endoplasmic reticulum membrane	1.24E-02
34	GO:0009504: cell plate	1.89E-02
35	GO:0031965: nuclear membrane	1.89E-02
36	GO:0005788: endoplasmic reticulum lumen	2.69E-02
37	GO:0009536: plastid	2.78E-02
38	GO:0016021: integral component of membrane	3.29E-02
39	GO:0009507: chloroplast	3.69E-02
40	GO:0031902: late endosome membrane	4.18E-02
41	GO:0005794: Golgi apparatus	4.67E-02
42	GO:0005774: vacuolar membrane	4.89E-02
43	GO:0005802: trans-Golgi network	4.94E-02