co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G46820

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090627: plant epidermal cell differentiation	0.00E+00
2	GO:2000505: regulation of energy homeostasis	0.00E+00
3	GO:0009773: photosynthetic electron transport in photosystem I	2.65E-08
4	GO:0010205: photoinhibition	1.75E-06
5	GO:0015979: photosynthesis	5.24E-06
6	GO:0080170: hydrogen peroxide transmembrane transport	5.26E-06
7	GO:0010207: photosystem II assembly	6.19E-06
8	GO:0034220: ion transmembrane transport	3.10E-05
9	GO:0010206: photosystem II repair	9.74E-05
10	GO:0006106: fumarate metabolic process	1.06E-04
11	GO:1902458: positive regulation of stomatal opening	1.06E-04
12	GO:0016024: CDP-diacylglycerol biosynthetic process	1.91E-04
13	GO:0035304: regulation of protein dephosphorylation	2.48E-04
14	GO:0043255: regulation of carbohydrate biosynthetic process	2.48E-04
15	GO:0001736: establishment of planar polarity	2.48E-04
16	GO:1903426: regulation of reactive oxygen species biosynthetic process	2.48E-04
17	GO:0009735: response to cytokinin	2.99E-04
18	GO:0006636: unsaturated fatty acid biosynthetic process	3.14E-04
19	GO:0006833: water transport	3.14E-04
20	GO:0090391: granum assembly	4.12E-04
21	GO:0009306: protein secretion	5.47E-04
22	GO:1901332: negative regulation of lateral root development	5.92E-04
23	GO:0071484: cellular response to light intensity	5.92E-04
24	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	5.92E-04
25	GO:0010305: leaf vascular tissue pattern formation	6.86E-04
26	GO:0030104: water homeostasis	7.86E-04
27	GO:0010109: regulation of photosynthesis	7.86E-04
28	GO:0045727: positive regulation of translation	7.86E-04
29	GO:0009651: response to salt stress	8.72E-04
30	GO:0045038: protein import into chloroplast thylakoid membrane	9.92E-04
31	GO:0010027: thylakoid membrane organization	1.19E-03
32	GO:0009913: epidermal cell differentiation	1.21E-03
33	GO:0006655: phosphatidylglycerol biosynthetic process	1.21E-03
34	GO:0010337: regulation of salicylic acid metabolic process	1.21E-03
35	GO:0042549: photosystem II stabilization	1.21E-03
36	GO:0015995: chlorophyll biosynthetic process	1.40E-03
37	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	1.45E-03
38	GO:0009733: response to auxin	1.50E-03
39	GO:0010311: lateral root formation	1.62E-03
40	GO:1900057: positive regulation of leaf senescence	1.70E-03
41	GO:0010444: guard mother cell differentiation	1.70E-03
42	GO:0009772: photosynthetic electron transport in photosystem II	1.70E-03
43	GO:0010196: nonphotochemical quenching	1.70E-03
44	GO:0009416: response to light stimulus	1.81E-03
45	GO:0006605: protein targeting	1.97E-03
46	GO:2000070: regulation of response to water deprivation	1.97E-03
47	GO:0046620: regulation of organ growth	1.97E-03
48	GO:0009409: response to cold	2.09E-03
49	GO:0032544: plastid translation	2.24E-03
50	GO:0009245: lipid A biosynthetic process	2.53E-03
51	GO:0009638: phototropism	2.84E-03
52	GO:0006032: chitin catabolic process	3.15E-03
53	GO:0048829: root cap development	3.15E-03
54	GO:0019684: photosynthesis, light reaction	3.47E-03
55	GO:0018119: peptidyl-cysteine S-nitrosylation	3.47E-03
56	GO:0048765: root hair cell differentiation	3.47E-03
57	GO:0046856: phosphatidylinositol dephosphorylation	3.47E-03
58	GO:0016042: lipid catabolic process	4.15E-03
59	GO:0010628: positive regulation of gene expression	4.16E-03
60	GO:0006108: malate metabolic process	4.16E-03
61	GO:0010588: cotyledon vascular tissue pattern formation	4.16E-03
62	GO:0009785: blue light signaling pathway	4.16E-03
63	GO:0010143: cutin biosynthetic process	4.52E-03
64	GO:0009624: response to nematode	4.75E-03
65	GO:0071732: cellular response to nitric oxide	4.88E-03
66	GO:0010030: positive regulation of seed germination	4.88E-03
67	GO:0010053: root epidermal cell differentiation	4.88E-03
68	GO:0009825: multidimensional cell growth	4.88E-03
69	GO:0010167: response to nitrate	4.88E-03
70	GO:0051726: regulation of cell cycle	5.03E-03
71	GO:0010025: wax biosynthetic process	5.26E-03
72	GO:2000377: regulation of reactive oxygen species metabolic process	5.65E-03
73	GO:0007017: microtubule-based process	6.05E-03
74	GO:0031408: oxylipin biosynthetic process	6.46E-03
75	GO:0003333: amino acid transmembrane transport	6.46E-03
76	GO:0016998: cell wall macromolecule catabolic process	6.46E-03
77	GO:0048511: rhythmic process	6.46E-03
78	GO:0019915: lipid storage	6.46E-03
79	GO:0009734: auxin-activated signaling pathway	6.64E-03
80	GO:0071369: cellular response to ethylene stimulus	7.30E-03
81	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	7.30E-03
82	GO:0006633: fatty acid biosynthetic process	7.46E-03
83	GO:0042127: regulation of cell proliferation	7.74E-03
84	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	8.19E-03
85	GO:0045490: pectin catabolic process	8.20E-03
86	GO:0080022: primary root development	8.64E-03
87	GO:0010087: phloem or xylem histogenesis	8.64E-03
88	GO:0042631: cellular response to water deprivation	8.64E-03
89	GO:0042335: cuticle development	8.64E-03
90	GO:0009958: positive gravitropism	9.10E-03
91	GO:0071472: cellular response to salt stress	9.10E-03
92	GO:0006810: transport	9.47E-03
93	GO:0015986: ATP synthesis coupled proton transport	9.58E-03
94	GO:0042752: regulation of circadian rhythm	9.58E-03
95	GO:0048825: cotyledon development	1.01E-02
96	GO:0000302: response to reactive oxygen species	1.06E-02
97	GO:0016032: viral process	1.11E-02
98	GO:0071281: cellular response to iron ion	1.16E-02
99	GO:0009828: plant-type cell wall loosening	1.21E-02
100	GO:0007049: cell cycle	1.42E-02
101	GO:0009627: systemic acquired resistance	1.48E-02
102	GO:0042128: nitrate assimilation	1.48E-02
103	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.63E-02
104	GO:0030244: cellulose biosynthetic process	1.65E-02
105	GO:0009631: cold acclimation	1.83E-02
106	GO:0006865: amino acid transport	1.89E-02
107	GO:0034599: cellular response to oxidative stress	2.02E-02
108	GO:0006099: tricarboxylic acid cycle	2.02E-02
109	GO:0006869: lipid transport	2.07E-02
110	GO:0009414: response to water deprivation	2.11E-02
111	GO:0009926: auxin polar transport	2.34E-02
112	GO:0009664: plant-type cell wall organization	2.75E-02
113	GO:0016567: protein ubiquitination	2.81E-02
114	GO:0009809: lignin biosynthetic process	2.89E-02
115	GO:0006364: rRNA processing	2.89E-02
116	GO:0048367: shoot system development	3.33E-02
117	GO:0048316: seed development	3.33E-02
118	GO:0051301: cell division	4.49E-02
119	GO:0009845: seed germination	4.61E-02
120	GO:0042744: hydrogen peroxide catabolic process	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
2	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
3	GO:0015250: water channel activity	8.61E-05
4	GO:0004333: fumarate hydratase activity	1.06E-04
5	GO:0010242: oxygen evolving activity	1.06E-04
6	GO:0045485: omega-6 fatty acid desaturase activity	1.06E-04
7	GO:0009977: proton motive force dependent protein transmembrane transporter activity	2.48E-04
8	GO:0008266: poly(U) RNA binding	2.49E-04
9	GO:0005528: FK506 binding	3.49E-04
10	GO:0090729: toxin activity	4.12E-04
11	GO:0030570: pectate lyase activity	5.04E-04
12	GO:0016851: magnesium chelatase activity	5.92E-04
13	GO:0004871: signal transducer activity	6.00E-04
14	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	7.86E-04
15	GO:0010011: auxin binding	7.86E-04
16	GO:0010328: auxin influx transmembrane transporter activity	7.86E-04
17	GO:0031177: phosphopantetheine binding	1.21E-03
18	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	1.21E-03
19	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	1.21E-03
20	GO:0004629: phospholipase C activity	1.21E-03
21	GO:0004130: cytochrome-c peroxidase activity	1.21E-03
22	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.21E-03
23	GO:0042578: phosphoric ester hydrolase activity	1.21E-03
24	GO:0004017: adenylate kinase activity	1.45E-03
25	GO:0000035: acyl binding	1.45E-03
26	GO:0004435: phosphatidylinositol phospholipase C activity	1.45E-03
27	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	1.70E-03
28	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	1.97E-03
29	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	2.24E-03
30	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.90E-03
31	GO:0004568: chitinase activity	3.15E-03
32	GO:0008794: arsenate reductase (glutaredoxin) activity	3.47E-03
33	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	3.81E-03
34	GO:0031072: heat shock protein binding	4.16E-03
35	GO:0005515: protein binding	4.21E-03
36	GO:0016746: transferase activity, transferring acyl groups	4.89E-03
37	GO:0016829: lyase activity	6.42E-03
38	GO:0004176: ATP-dependent peptidase activity	6.46E-03
39	GO:0003756: protein disulfide isomerase activity	7.74E-03
40	GO:0016491: oxidoreductase activity	8.03E-03
41	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	9.10E-03
42	GO:0050662: coenzyme binding	9.58E-03
43	GO:0019901: protein kinase binding	1.01E-02
44	GO:0016791: phosphatase activity	1.21E-02
45	GO:0005200: structural constituent of cytoskeleton	1.26E-02
46	GO:0008483: transaminase activity	1.26E-02
47	GO:0016788: hydrolase activity, acting on ester bonds	1.30E-02
48	GO:0016168: chlorophyll binding	1.42E-02
49	GO:0030247: polysaccharide binding	1.54E-02
50	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.65E-02
51	GO:0052689: carboxylic ester hydrolase activity	1.75E-02
52	GO:0005509: calcium ion binding	1.97E-02
53	GO:0051537: 2 iron, 2 sulfur cluster binding	2.47E-02
54	GO:0009055: electron carrier activity	2.50E-02
55	GO:0015293: symporter activity	2.54E-02
56	GO:0015171: amino acid transmembrane transporter activity	3.11E-02
57	GO:0031625: ubiquitin protein ligase binding	3.11E-02
58	GO:0008289: lipid binding	3.24E-02
59	GO:0003779: actin binding	3.64E-02
60	GO:0051082: unfolded protein binding	3.72E-02
61	GO:0015035: protein disulfide oxidoreductase activity	3.80E-02
62	GO:0019843: rRNA binding	4.36E-02

Rank	GO Term	Adjusted P value
1	GO:0009534: chloroplast thylakoid	1.21E-17
2	GO:0009535: chloroplast thylakoid membrane	4.72E-17
3	GO:0009543: chloroplast thylakoid lumen	6.05E-14
4	GO:0009579: thylakoid	2.56E-13
5	GO:0009507: chloroplast	3.00E-12
6	GO:0031977: thylakoid lumen	8.28E-09
7	GO:0030095: chloroplast photosystem II	6.90E-08
8	GO:0009570: chloroplast stroma	3.40E-06
9	GO:0009654: photosystem II oxygen evolving complex	1.31E-05
10	GO:0019898: extrinsic component of membrane	4.38E-05
11	GO:0010287: plastoglobule	7.36E-05
12	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	9.74E-05
13	GO:0009515: granal stacked thylakoid	1.06E-04
14	GO:0045239: tricarboxylic acid cycle enzyme complex	1.06E-04
15	GO:0043674: columella	1.06E-04
16	GO:0009941: chloroplast envelope	1.43E-04
17	GO:0033281: TAT protein transport complex	4.12E-04
18	GO:0010007: magnesium chelatase complex	4.12E-04
19	GO:0015630: microtubule cytoskeleton	5.92E-04
20	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	1.21E-03
21	GO:0042807: central vacuole	1.70E-03
22	GO:0009986: cell surface	1.70E-03
23	GO:0008180: COP9 signalosome	2.53E-03
24	GO:0031969: chloroplast membrane	2.63E-03
25	GO:0009706: chloroplast inner membrane	4.75E-03
26	GO:0005887: integral component of plasma membrane	6.34E-03
27	GO:0009522: photosystem I	9.58E-03
28	GO:0009523: photosystem II	1.01E-02
29	GO:0005886: plasma membrane	1.01E-02
30	GO:0010319: stromule	1.26E-02
31	GO:0019005: SCF ubiquitin ligase complex	1.65E-02
32	GO:0016020: membrane	1.66E-02
33	GO:0016021: integral component of membrane	1.79E-02
34	GO:0000502: proteasome complex	2.89E-02