co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G46630

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
2	GO:0033494: ferulate metabolic process	0.00E+00
3	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
4	GO:0007638: mechanosensory behavior	0.00E+00
5	GO:0016553: base conversion or substitution editing	0.00E+00
6	GO:0015976: carbon utilization	1.38E-07
7	GO:2000122: negative regulation of stomatal complex development	2.82E-05
8	GO:0010037: response to carbon dioxide	2.82E-05
9	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.16E-05
10	GO:0007155: cell adhesion	1.59E-04
11	GO:0010583: response to cyclopentenone	1.86E-04
12	GO:0060627: regulation of vesicle-mediated transport	1.95E-04
13	GO:0046520: sphingoid biosynthetic process	1.95E-04
14	GO:0043489: RNA stabilization	1.95E-04
15	GO:0010442: guard cell morphogenesis	1.95E-04
16	GO:0071370: cellular response to gibberellin stimulus	1.95E-04
17	GO:0042371: vitamin K biosynthetic process	1.95E-04
18	GO:0009735: response to cytokinin	3.04E-04
19	GO:0048829: root cap development	3.37E-04
20	GO:0042742: defense response to bacterium	3.99E-04
21	GO:0052541: plant-type cell wall cellulose metabolic process	4.38E-04
22	GO:0006695: cholesterol biosynthetic process	4.38E-04
23	GO:0060919: auxin influx	4.38E-04
24	GO:0045490: pectin catabolic process	5.71E-04
25	GO:0006631: fatty acid metabolic process	6.75E-04
26	GO:0007010: cytoskeleton organization	7.89E-04
27	GO:0003333: amino acid transmembrane transport	9.50E-04
28	GO:0010088: phloem development	1.02E-03
29	GO:0006424: glutamyl-tRNA aminoacylation	1.02E-03
30	GO:0043572: plastid fission	1.02E-03
31	GO:0007231: osmosensory signaling pathway	1.02E-03
32	GO:0019722: calcium-mediated signaling	1.22E-03
33	GO:0015689: molybdate ion transport	1.35E-03
34	GO:0009765: photosynthesis, light harvesting	1.35E-03
35	GO:0006085: acetyl-CoA biosynthetic process	1.35E-03
36	GO:0006183: GTP biosynthetic process	1.35E-03
37	GO:0033500: carbohydrate homeostasis	1.35E-03
38	GO:0031122: cytoplasmic microtubule organization	1.35E-03
39	GO:0042991: transcription factor import into nucleus	1.35E-03
40	GO:0042335: cuticle development	1.42E-03
41	GO:0000413: protein peptidyl-prolyl isomerization	1.42E-03
42	GO:0071555: cell wall organization	1.50E-03
43	GO:0048359: mucilage metabolic process involved in seed coat development	1.72E-03
44	GO:0016120: carotene biosynthetic process	1.72E-03
45	GO:0032543: mitochondrial translation	1.72E-03
46	GO:0016123: xanthophyll biosynthetic process	1.72E-03
47	GO:0045454: cell redox homeostasis	2.00E-03
48	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.12E-03
49	GO:0006796: phosphate-containing compound metabolic process	2.12E-03
50	GO:0018258: protein O-linked glycosylation via hydroxyproline	2.12E-03
51	GO:0010405: arabinogalactan protein metabolic process	2.12E-03
52	GO:0006869: lipid transport	2.31E-03
53	GO:0007267: cell-cell signaling	2.42E-03
54	GO:0009955: adaxial/abaxial pattern specification	2.54E-03
55	GO:1901259: chloroplast rRNA processing	2.54E-03
56	GO:0006694: steroid biosynthetic process	2.54E-03
57	GO:0010555: response to mannitol	2.54E-03
58	GO:0006633: fatty acid biosynthetic process	2.98E-03
59	GO:0010411: xyloglucan metabolic process	3.19E-03
60	GO:0009642: response to light intensity	3.47E-03
61	GO:0030091: protein repair	3.47E-03
62	GO:0009817: defense response to fungus, incompatible interaction	3.53E-03
63	GO:0009834: plant-type secondary cell wall biogenesis	3.89E-03
64	GO:0009932: cell tip growth	3.97E-03
65	GO:0006526: arginine biosynthetic process	3.97E-03
66	GO:0032544: plastid translation	3.97E-03
67	GO:0009808: lignin metabolic process	3.97E-03
68	GO:0010119: regulation of stomatal movement	4.08E-03
69	GO:0006865: amino acid transport	4.27E-03
70	GO:0045337: farnesyl diphosphate biosynthetic process	4.49E-03
71	GO:0033384: geranyl diphosphate biosynthetic process	4.49E-03
72	GO:0006754: ATP biosynthetic process	4.49E-03
73	GO:0048589: developmental growth	4.49E-03
74	GO:0015780: nucleotide-sugar transport	4.49E-03
75	GO:0055114: oxidation-reduction process	4.57E-03
76	GO:0042761: very long-chain fatty acid biosynthetic process	5.04E-03
77	GO:0019538: protein metabolic process	5.61E-03
78	GO:0043069: negative regulation of programmed cell death	5.61E-03
79	GO:0006949: syncytium formation	5.61E-03
80	GO:0042546: cell wall biogenesis	5.99E-03
81	GO:0006816: calcium ion transport	6.20E-03
82	GO:0009773: photosynthetic electron transport in photosystem I	6.20E-03
83	GO:0018119: peptidyl-cysteine S-nitrosylation	6.20E-03
84	GO:0006790: sulfur compound metabolic process	6.81E-03
85	GO:0042538: hyperosmotic salinity response	7.22E-03
86	GO:0050826: response to freezing	7.44E-03
87	GO:0009736: cytokinin-activated signaling pathway	7.75E-03
88	GO:0010143: cutin biosynthetic process	8.10E-03
89	GO:0010020: chloroplast fission	8.10E-03
90	GO:0009969: xyloglucan biosynthetic process	8.77E-03
91	GO:0005985: sucrose metabolic process	8.77E-03
92	GO:0070588: calcium ion transmembrane transport	8.77E-03
93	GO:0046854: phosphatidylinositol phosphorylation	8.77E-03
94	GO:0009409: response to cold	9.28E-03
95	GO:0010025: wax biosynthetic process	9.46E-03
96	GO:0006071: glycerol metabolic process	9.46E-03
97	GO:0019344: cysteine biosynthetic process	1.02E-02
98	GO:0000027: ribosomal large subunit assembly	1.02E-02
99	GO:0042545: cell wall modification	1.07E-02
100	GO:0006418: tRNA aminoacylation for protein translation	1.09E-02
101	GO:0010026: trichome differentiation	1.09E-02
102	GO:0007017: microtubule-based process	1.09E-02
103	GO:0030245: cellulose catabolic process	1.24E-02
104	GO:0080092: regulation of pollen tube growth	1.24E-02
105	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.32E-02
106	GO:0009294: DNA mediated transformation	1.32E-02
107	GO:0016117: carotenoid biosynthetic process	1.48E-02
108	GO:0000271: polysaccharide biosynthetic process	1.57E-02
109	GO:0080022: primary root development	1.57E-02
110	GO:0045489: pectin biosynthetic process	1.65E-02
111	GO:0006520: cellular amino acid metabolic process	1.65E-02
112	GO:0048825: cotyledon development	1.83E-02
113	GO:0071554: cell wall organization or biogenesis	1.92E-02
114	GO:0016132: brassinosteroid biosynthetic process	1.92E-02
115	GO:1901657: glycosyl compound metabolic process	2.11E-02
116	GO:0009828: plant-type cell wall loosening	2.20E-02
117	GO:0009617: response to bacterium	2.29E-02
118	GO:0071805: potassium ion transmembrane transport	2.30E-02
119	GO:0015995: chlorophyll biosynthetic process	2.80E-02
120	GO:0009826: unidimensional cell growth	2.86E-02
121	GO:0048481: plant ovule development	3.02E-02
122	GO:0042254: ribosome biogenesis	3.03E-02
123	GO:0000160: phosphorelay signal transduction system	3.12E-02
124	GO:0009813: flavonoid biosynthetic process	3.12E-02
125	GO:0010311: lateral root formation	3.12E-02
126	GO:0048767: root hair elongation	3.12E-02
127	GO:0009407: toxin catabolic process	3.23E-02
128	GO:0009631: cold acclimation	3.34E-02
129	GO:0055085: transmembrane transport	3.51E-02
130	GO:0005975: carbohydrate metabolic process	3.53E-02
131	GO:0045087: innate immune response	3.57E-02
132	GO:0016051: carbohydrate biosynthetic process	3.57E-02
133	GO:0046686: response to cadmium ion	3.67E-02
134	GO:0006839: mitochondrial transport	3.92E-02
135	GO:0051707: response to other organism	4.27E-02
136	GO:0009640: photomorphogenesis	4.27E-02
137	GO:0009926: auxin polar transport	4.27E-02
138	GO:0008643: carbohydrate transport	4.52E-02
139	GO:0009636: response to toxic substance	4.64E-02

Rank	GO Term	Adjusted P value
1	GO:0050614: delta24-sterol reductase activity	0.00E+00
2	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
3	GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity	0.00E+00
4	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
5	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
6	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
7	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
8	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
9	GO:0019146: arabinose-5-phosphate isomerase activity	0.00E+00
10	GO:0051920: peroxiredoxin activity	5.68E-09
11	GO:0016209: antioxidant activity	2.03E-08
12	GO:0004089: carbonate dehydratase activity	2.05E-05
13	GO:0010328: auxin influx transmembrane transporter activity	2.82E-05
14	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	1.95E-04
15	GO:0000170: sphingosine hydroxylase activity	1.95E-04
16	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	1.95E-04
17	GO:0004560: alpha-L-fucosidase activity	1.95E-04
18	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	1.95E-04
19	GO:0080132: fatty acid alpha-hydroxylase activity	1.95E-04
20	GO:0008568: microtubule-severing ATPase activity	1.95E-04
21	GO:0009374: biotin binding	1.95E-04
22	GO:0019843: rRNA binding	3.46E-04
23	GO:0003938: IMP dehydrogenase activity	4.38E-04
24	GO:0042284: sphingolipid delta-4 desaturase activity	4.38E-04
25	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	4.38E-04
26	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	6.47E-04
27	GO:0070330: aromatase activity	7.14E-04
28	GO:0050734: hydroxycinnamoyltransferase activity	7.14E-04
29	GO:0002161: aminoacyl-tRNA editing activity	7.14E-04
30	GO:0005504: fatty acid binding	7.14E-04
31	GO:0030267: glyoxylate reductase (NADP) activity	7.14E-04
32	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	7.14E-04
33	GO:0003878: ATP citrate synthase activity	1.02E-03
34	GO:0004601: peroxidase activity	1.10E-03
35	GO:0030570: pectate lyase activity	1.13E-03
36	GO:0015098: molybdate ion transmembrane transporter activity	1.35E-03
37	GO:0045430: chalcone isomerase activity	1.35E-03
38	GO:0004659: prenyltransferase activity	1.35E-03
39	GO:0030599: pectinesterase activity	1.56E-03
40	GO:0018685: alkane 1-monooxygenase activity	1.72E-03
41	GO:0003989: acetyl-CoA carboxylase activity	1.72E-03
42	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.89E-03
43	GO:1990714: hydroxyproline O-galactosyltransferase activity	2.12E-03
44	GO:0016462: pyrophosphatase activity	2.12E-03
45	GO:0016722: oxidoreductase activity, oxidizing metal ions	2.42E-03
46	GO:0005200: structural constituent of cytoskeleton	2.42E-03
47	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.54E-03
48	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.54E-03
49	GO:0051753: mannan synthase activity	2.54E-03
50	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	2.54E-03
51	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	2.54E-03
52	GO:0004427: inorganic diphosphatase activity	3.00E-03
53	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.19E-03
54	GO:0004672: protein kinase activity	3.22E-03
55	GO:0052747: sinapyl alcohol dehydrogenase activity	3.47E-03
56	GO:0004564: beta-fructofuranosidase activity	3.47E-03
57	GO:0004337: geranyltranstransferase activity	4.49E-03
58	GO:0008889: glycerophosphodiester phosphodiesterase activity	4.49E-03
59	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	4.49E-03
60	GO:0008289: lipid binding	4.56E-03
61	GO:0004575: sucrose alpha-glucosidase activity	5.04E-03
62	GO:0004161: dimethylallyltranstransferase activity	6.20E-03
63	GO:0005089: Rho guanyl-nucleotide exchange factor activity	6.20E-03
64	GO:0015293: symporter activity	6.46E-03
65	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	6.71E-03
66	GO:0008378: galactosyltransferase activity	6.81E-03
67	GO:0000049: tRNA binding	6.81E-03
68	GO:0045551: cinnamyl-alcohol dehydrogenase activity	6.81E-03
69	GO:0004565: beta-galactosidase activity	7.44E-03
70	GO:0005262: calcium channel activity	7.44E-03
71	GO:0008266: poly(U) RNA binding	8.10E-03
72	GO:0015171: amino acid transmembrane transporter activity	8.59E-03
73	GO:0045330: aspartyl esterase activity	8.59E-03
74	GO:0004650: polygalacturonase activity	1.01E-02
75	GO:0004857: enzyme inhibitor activity	1.02E-02
76	GO:0015079: potassium ion transmembrane transporter activity	1.09E-02
77	GO:0004176: ATP-dependent peptidase activity	1.17E-02
78	GO:0019706: protein-cysteine S-palmitoyltransferase activity	1.17E-02
79	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.24E-02
80	GO:0008810: cellulase activity	1.32E-02
81	GO:0016758: transferase activity, transferring hexosyl groups	1.35E-02
82	GO:0008514: organic anion transmembrane transporter activity	1.40E-02
83	GO:0004812: aminoacyl-tRNA ligase activity	1.48E-02
84	GO:0003735: structural constituent of ribosome	1.80E-02
85	GO:0000156: phosphorelay response regulator activity	2.11E-02
86	GO:0003824: catalytic activity	2.19E-02
87	GO:0016887: ATPase activity	2.20E-02
88	GO:0008237: metallopeptidase activity	2.30E-02
89	GO:0016413: O-acetyltransferase activity	2.40E-02
90	GO:0009931: calcium-dependent protein serine/threonine kinase activity	2.70E-02
91	GO:0102483: scopolin beta-glucosidase activity	2.80E-02
92	GO:0004683: calmodulin-dependent protein kinase activity	2.80E-02
93	GO:0004222: metalloendopeptidase activity	3.23E-02
94	GO:0004674: protein serine/threonine kinase activity	3.30E-02
95	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.34E-02
96	GO:0016740: transferase activity	3.34E-02
97	GO:0008422: beta-glucosidase activity	3.80E-02
98	GO:0005507: copper ion binding	4.04E-02
99	GO:0052689: carboxylic ester hydrolase activity	4.06E-02
100	GO:0004364: glutathione transferase activity	4.15E-02
101	GO:0004185: serine-type carboxypeptidase activity	4.27E-02
102	GO:0005516: calmodulin binding	4.32E-02
103	GO:0043621: protein self-association	4.52E-02
104	GO:0051537: 2 iron, 2 sulfur cluster binding	4.52E-02
105	GO:0004871: signal transducer activity	4.60E-02
106	GO:0051287: NAD binding	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0031225: anchored component of membrane	2.07E-11
2	GO:0046658: anchored component of plasma membrane	1.01E-10
3	GO:0009570: chloroplast stroma	1.31E-10
4	GO:0009505: plant-type cell wall	4.91E-10
5	GO:0009941: chloroplast envelope	5.83E-10
6	GO:0048046: apoplast	7.16E-10
7	GO:0005618: cell wall	8.43E-08
8	GO:0005886: plasma membrane	9.55E-08
9	GO:0009579: thylakoid	1.59E-07
10	GO:0005576: extracellular region	1.58E-05
11	GO:0031977: thylakoid lumen	6.53E-05
12	GO:0016020: membrane	6.91E-05
13	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	1.95E-04
14	GO:0009535: chloroplast thylakoid membrane	2.09E-04
15	GO:0009507: chloroplast	2.26E-04
16	GO:0010319: stromule	2.41E-04
17	GO:0009543: chloroplast thylakoid lumen	3.46E-04
18	GO:0009534: chloroplast thylakoid	5.42E-04
19	GO:0009506: plasmodesma	6.45E-04
20	GO:0009317: acetyl-CoA carboxylase complex	7.14E-04
21	GO:0005775: vacuolar lumen	1.02E-03
22	GO:0009346: citrate lyase complex	1.02E-03
23	GO:0005794: Golgi apparatus	1.74E-03
24	GO:0000139: Golgi membrane	2.74E-03
25	GO:0009533: chloroplast stromal thylakoid	3.00E-03
26	GO:0005802: trans-Golgi network	3.63E-03
27	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.49E-03
28	GO:0045298: tubulin complex	4.49E-03
29	GO:0005763: mitochondrial small ribosomal subunit	4.49E-03
30	GO:0005768: endosome	4.55E-03
31	GO:0016324: apical plasma membrane	5.61E-03
32	GO:0000311: plastid large ribosomal subunit	6.81E-03
33	GO:0009536: plastid	7.81E-03
34	GO:0030659: cytoplasmic vesicle membrane	8.10E-03
35	GO:0005875: microtubule associated complex	9.46E-03
36	GO:0005773: vacuole	1.51E-02
37	GO:0005774: vacuolar membrane	1.71E-02
38	GO:0022626: cytosolic ribosome	2.47E-02
39	GO:0030529: intracellular ribonucleoprotein complex	2.50E-02
40	GO:0016021: integral component of membrane	2.55E-02
41	GO:0000325: plant-type vacuole	3.34E-02
42	GO:0005874: microtubule	3.56E-02
43	GO:0022625: cytosolic large ribosomal subunit	3.87E-02
44	GO:0031902: late endosome membrane	4.03E-02
45	GO:0005856: cytoskeleton	4.64E-02