Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G46620

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006987: activation of signaling protein activity involved in unfolded protein response0.00E+00
2GO:0000390: spliceosomal complex disassembly0.00E+00
3GO:0060213: positive regulation of nuclear-transcribed mRNA poly(A) tail shortening0.00E+00
4GO:0019484: beta-alanine catabolic process0.00E+00
5GO:0019481: L-alanine catabolic process, by transamination0.00E+00
6GO:0009448: gamma-aminobutyric acid metabolic process0.00E+00
7GO:0098755: maintenance of seed dormancy by absisic acid0.00E+00
8GO:0006105: succinate metabolic process0.00E+00
9GO:0010398: xylogalacturonan metabolic process0.00E+00
10GO:0046686: response to cadmium ion3.80E-07
11GO:0052544: defense response by callose deposition in cell wall1.60E-05
12GO:0000162: tryptophan biosynthetic process4.44E-05
13GO:1900425: negative regulation of defense response to bacterium7.77E-05
14GO:0009450: gamma-aminobutyric acid catabolic process2.13E-04
15GO:0071366: cellular response to indolebutyric acid stimulus2.13E-04
16GO:0000291: nuclear-transcribed mRNA catabolic process, exonucleolytic2.13E-04
17GO:0046520: sphingoid biosynthetic process2.13E-04
18GO:0007292: female gamete generation2.13E-04
19GO:0035266: meristem growth2.13E-04
20GO:0019673: GDP-mannose metabolic process2.13E-04
21GO:0009865: pollen tube adhesion2.13E-04
22GO:0006540: glutamate decarboxylation to succinate2.13E-04
23GO:0010941: regulation of cell death2.13E-04
24GO:0010184: cytokinin transport2.13E-04
25GO:0009727: detection of ethylene stimulus4.76E-04
26GO:0051788: response to misfolded protein4.76E-04
27GO:0009257: 10-formyltetrahydrofolate biosynthetic process4.76E-04
28GO:0010033: response to organic substance4.76E-04
29GO:0051258: protein polymerization4.76E-04
30GO:0045948: positive regulation of translational initiation4.76E-04
31GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine4.76E-04
32GO:0006099: tricarboxylic acid cycle6.72E-04
33GO:0042344: indole glucosinolate catabolic process7.74E-04
34GO:0006954: inflammatory response7.74E-04
35GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway7.74E-04
36GO:1900140: regulation of seedling development7.74E-04
37GO:0060968: regulation of gene silencing7.74E-04
38GO:0061158: 3'-UTR-mediated mRNA destabilization7.74E-04
39GO:0017006: protein-tetrapyrrole linkage7.74E-04
40GO:0042351: 'de novo' GDP-L-fucose biosynthetic process7.74E-04
41GO:0006020: inositol metabolic process1.10E-03
42GO:0009399: nitrogen fixation1.10E-03
43GO:2001289: lipid X metabolic process1.10E-03
44GO:0009113: purine nucleobase biosynthetic process1.10E-03
45GO:0070301: cellular response to hydrogen peroxide1.10E-03
46GO:0048194: Golgi vesicle budding1.10E-03
47GO:0009584: detection of visible light1.10E-03
48GO:0071786: endoplasmic reticulum tubular network organization1.10E-03
49GO:0072334: UDP-galactose transmembrane transport1.10E-03
50GO:0015749: monosaccharide transport1.10E-03
51GO:0006882: cellular zinc ion homeostasis1.10E-03
52GO:0009306: protein secretion1.38E-03
53GO:0006542: glutamine biosynthetic process1.47E-03
54GO:0033320: UDP-D-xylose biosynthetic process1.47E-03
55GO:0048830: adventitious root development1.47E-03
56GO:0006536: glutamate metabolic process1.47E-03
57GO:0042273: ribosomal large subunit biogenesis1.47E-03
58GO:0006878: cellular copper ion homeostasis1.47E-03
59GO:0010600: regulation of auxin biosynthetic process1.47E-03
60GO:0046323: glucose import1.73E-03
61GO:0006090: pyruvate metabolic process1.87E-03
62GO:0007029: endoplasmic reticulum organization1.87E-03
63GO:0005513: detection of calcium ion1.87E-03
64GO:0042742: defense response to bacterium1.94E-03
65GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.94E-03
66GO:0046777: protein autophosphorylation2.05E-03
67GO:0015691: cadmium ion transport2.31E-03
68GO:0048232: male gamete generation2.31E-03
69GO:0048827: phyllome development2.31E-03
70GO:0043248: proteasome assembly2.31E-03
71GO:0006388: tRNA splicing, via endonucleolytic cleavage and ligation2.31E-03
72GO:0042732: D-xylose metabolic process2.31E-03
73GO:0010358: leaf shaping2.31E-03
74GO:0006014: D-ribose metabolic process2.31E-03
75GO:0050665: hydrogen peroxide biosynthetic process2.31E-03
76GO:0009759: indole glucosinolate biosynthetic process2.31E-03
77GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly2.31E-03
78GO:0006914: autophagy2.58E-03
79GO:0006904: vesicle docking involved in exocytosis2.74E-03
80GO:0009612: response to mechanical stimulus2.77E-03
81GO:0048280: vesicle fusion with Golgi apparatus2.77E-03
82GO:0009737: response to abscisic acid2.80E-03
83GO:0001666: response to hypoxia3.07E-03
84GO:0046470: phosphatidylcholine metabolic process3.26E-03
85GO:0009396: folic acid-containing compound biosynthetic process3.26E-03
86GO:0006614: SRP-dependent cotranslational protein targeting to membrane3.26E-03
87GO:0016559: peroxisome fission3.78E-03
88GO:0006102: isocitrate metabolic process3.78E-03
89GO:1900150: regulation of defense response to fungus3.78E-03
90GO:0009690: cytokinin metabolic process3.78E-03
91GO:0006605: protein targeting3.78E-03
92GO:0009415: response to water3.78E-03
93GO:0010078: maintenance of root meristem identity3.78E-03
94GO:0009819: drought recovery3.78E-03
95GO:0010311: lateral root formation4.20E-03
96GO:0006367: transcription initiation from RNA polymerase II promoter4.33E-03
97GO:0030968: endoplasmic reticulum unfolded protein response4.33E-03
98GO:0010119: regulation of stomatal movement4.62E-03
99GO:0010043: response to zinc ion4.62E-03
100GO:0090333: regulation of stomatal closure4.90E-03
101GO:0046916: cellular transition metal ion homeostasis4.90E-03
102GO:0009051: pentose-phosphate shunt, oxidative branch4.90E-03
103GO:0009617: response to bacterium4.94E-03
104GO:0045087: innate immune response5.07E-03
105GO:0016051: carbohydrate biosynthetic process5.07E-03
106GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway5.50E-03
107GO:0035999: tetrahydrofolate interconversion5.50E-03
108GO:0048829: root cap development6.12E-03
109GO:0009641: shade avoidance6.12E-03
110GO:0006535: cysteine biosynthetic process from serine6.12E-03
111GO:0006896: Golgi to vacuole transport6.12E-03
112GO:0009684: indoleacetic acid biosynthetic process6.77E-03
113GO:0030148: sphingolipid biosynthetic process6.77E-03
114GO:0010015: root morphogenesis6.77E-03
115GO:0009682: induced systemic resistance6.77E-03
116GO:0071365: cellular response to auxin stimulus7.44E-03
117GO:0000266: mitochondrial fission7.44E-03
118GO:0010105: negative regulation of ethylene-activated signaling pathway7.44E-03
119GO:0006468: protein phosphorylation7.55E-03
120GO:0006108: malate metabolic process8.13E-03
121GO:0006813: potassium ion transport8.80E-03
122GO:0002237: response to molecule of bacterial origin8.84E-03
123GO:0009933: meristem structural organization8.84E-03
124GO:0006541: glutamine metabolic process8.84E-03
125GO:0005985: sucrose metabolic process9.58E-03
126GO:0009969: xyloglucan biosynthetic process9.58E-03
127GO:0009225: nucleotide-sugar metabolic process9.58E-03
128GO:0007031: peroxisome organization9.58E-03
129GO:0007030: Golgi organization9.58E-03
130GO:0090351: seedling development9.58E-03
131GO:0016192: vesicle-mediated transport9.64E-03
132GO:0006863: purine nucleobase transport1.03E-02
133GO:0006096: glycolytic process1.04E-02
134GO:0048367: shoot system development1.08E-02
135GO:0019344: cysteine biosynthetic process1.11E-02
136GO:0051260: protein homooligomerization1.27E-02
137GO:0009269: response to desiccation1.27E-02
138GO:0016998: cell wall macromolecule catabolic process1.27E-02
139GO:0031348: negative regulation of defense response1.36E-02
140GO:0035428: hexose transmembrane transport1.36E-02
141GO:0030433: ubiquitin-dependent ERAD pathway1.36E-02
142GO:0010017: red or far-red light signaling pathway1.36E-02
143GO:0001944: vasculature development1.45E-02
144GO:0009625: response to insect1.45E-02
145GO:0006012: galactose metabolic process1.45E-02
146GO:0071215: cellular response to abscisic acid stimulus1.45E-02
147GO:0009789: positive regulation of abscisic acid-activated signaling pathway1.62E-02
148GO:0042147: retrograde transport, endosome to Golgi1.62E-02
149GO:0009845: seed germination1.71E-02
150GO:0042391: regulation of membrane potential1.72E-02
151GO:0042631: cellular response to water deprivation1.72E-02
152GO:0000413: protein peptidyl-prolyl isomerization1.72E-02
153GO:0010182: sugar mediated signaling pathway1.81E-02
154GO:0006885: regulation of pH1.81E-02
155GO:0010154: fruit development1.81E-02
156GO:0045489: pectin biosynthetic process1.81E-02
157GO:0042752: regulation of circadian rhythm1.91E-02
158GO:0048544: recognition of pollen1.91E-02
159GO:0009851: auxin biosynthetic process2.00E-02
160GO:0006623: protein targeting to vacuole2.00E-02
161GO:0010183: pollen tube guidance2.00E-02
162GO:0019252: starch biosynthetic process2.00E-02
163GO:0009873: ethylene-activated signaling pathway2.05E-02
164GO:0002229: defense response to oomycetes2.10E-02
165GO:0000302: response to reactive oxygen species2.10E-02
166GO:0006891: intra-Golgi vesicle-mediated transport2.10E-02
167GO:0006635: fatty acid beta-oxidation2.10E-02
168GO:0010150: leaf senescence2.18E-02
169GO:0010583: response to cyclopentenone2.20E-02
170GO:0009630: gravitropism2.20E-02
171GO:0071281: cellular response to iron ion2.31E-02
172GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process2.44E-02
173GO:0071805: potassium ion transmembrane transport2.52E-02
174GO:0010286: heat acclimation2.52E-02
175GO:0051607: defense response to virus2.62E-02
176GO:0010029: regulation of seed germination2.84E-02
177GO:0009816: defense response to bacterium, incompatible interaction2.84E-02
178GO:0009627: systemic acquired resistance2.95E-02
179GO:0042128: nitrate assimilation2.95E-02
180GO:0006888: ER to Golgi vesicle-mediated transport3.07E-02
181GO:0048573: photoperiodism, flowering3.07E-02
182GO:0006950: response to stress3.07E-02
183GO:0016049: cell growth3.18E-02
184GO:0009826: unidimensional cell growth3.24E-02
185GO:0018298: protein-chromophore linkage3.30E-02
186GO:0009817: defense response to fungus, incompatible interaction3.30E-02
187GO:0006499: N-terminal protein myristoylation3.54E-02
188GO:0006811: ion transport3.54E-02
189GO:0009631: cold acclimation3.66E-02
190GO:0009723: response to ethylene3.89E-02
191GO:0030001: metal ion transport4.29E-02
192GO:0010200: response to chitin4.31E-02
193GO:0006887: exocytosis4.41E-02
194GO:0006631: fatty acid metabolic process4.41E-02
195GO:0010114: response to red light4.68E-02
196GO:0051707: response to other organism4.68E-02
197GO:0009640: photomorphogenesis4.68E-02
RankGO TermAdjusted P value
1GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity0.00E+00
2GO:1990446: U1 snRNP binding0.00E+00
3GO:0005358: high-affinity hydrogen:glucose symporter activity0.00E+00
4GO:0034387: 4-aminobutyrate:pyruvate transaminase activity0.00E+00
5GO:0015211: purine nucleoside transmembrane transporter activity0.00E+00
6GO:0005524: ATP binding6.64E-05
7GO:0004012: phospholipid-translocating ATPase activity1.08E-04
8GO:0009679: hexose:proton symporter activity2.13E-04
9GO:0003867: 4-aminobutyrate transaminase activity2.13E-04
10GO:0000170: sphingosine hydroxylase activity2.13E-04
11GO:0046964: 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity2.13E-04
12GO:0046870: cadmium ion binding2.13E-04
13GO:0004112: cyclic-nucleotide phosphodiesterase activity2.13E-04
14GO:0008446: GDP-mannose 4,6-dehydratase activity2.13E-04
15GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity2.13E-04
16GO:0000287: magnesium ion binding2.32E-04
17GO:0004674: protein serine/threonine kinase activity2.97E-04
18GO:0030955: potassium ion binding3.26E-04
19GO:0004743: pyruvate kinase activity3.26E-04
20GO:0032791: lead ion binding4.76E-04
21GO:0045140: inositol phosphoceramide synthase activity4.76E-04
22GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity4.76E-04
23GO:0004329: formate-tetrahydrofolate ligase activity4.76E-04
24GO:0009883: red or far-red light photoreceptor activity4.76E-04
25GO:0004477: methenyltetrahydrofolate cyclohydrolase activity4.76E-04
26GO:0038199: ethylene receptor activity4.76E-04
27GO:0042284: sphingolipid delta-4 desaturase activity4.76E-04
28GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism5.75E-04
29GO:0000155: phosphorelay sensor kinase activity5.75E-04
30GO:0004473: malate dehydrogenase (decarboxylating) (NADP+) activity7.74E-04
31GO:0004049: anthranilate synthase activity7.74E-04
32GO:0003955: NAD(P)H dehydrogenase (quinone) activity7.74E-04
33GO:0005047: signal recognition particle binding7.74E-04
34GO:0008020: G-protein coupled photoreceptor activity7.74E-04
35GO:0004383: guanylate cyclase activity7.74E-04
36GO:0016805: dipeptidase activity7.74E-04
37GO:0042626: ATPase activity, coupled to transmembrane movement of substances9.92E-04
38GO:0051740: ethylene binding1.10E-03
39GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity1.10E-03
40GO:0004449: isocitrate dehydrogenase (NAD+) activity1.10E-03
41GO:0015086: cadmium ion transmembrane transporter activity1.10E-03
42GO:0004108: citrate (Si)-synthase activity1.10E-03
43GO:0001653: peptide receptor activity1.10E-03
44GO:0016656: monodehydroascorbate reductase (NADH) activity1.10E-03
45GO:0003727: single-stranded RNA binding1.38E-03
46GO:0004737: pyruvate decarboxylase activity1.47E-03
47GO:0004470: malic enzyme activity1.47E-03
48GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.47E-03
49GO:0004471: malate dehydrogenase (decarboxylating) (NAD+) activity1.47E-03
50GO:0004834: tryptophan synthase activity1.47E-03
51GO:0004576: oligosaccharyl transferase activity1.47E-03
52GO:0016652: oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor1.47E-03
53GO:0008948: oxaloacetate decarboxylase activity1.87E-03
54GO:0005546: phosphatidylinositol-4,5-bisphosphate binding1.87E-03
55GO:0004356: glutamate-ammonia ligase activity1.87E-03
56GO:0005459: UDP-galactose transmembrane transporter activity1.87E-03
57GO:0015145: monosaccharide transmembrane transporter activity1.87E-03
58GO:0016301: kinase activity2.16E-03
59GO:0048040: UDP-glucuronate decarboxylase activity2.31E-03
60GO:0031369: translation initiation factor binding2.31E-03
61GO:0030976: thiamine pyrophosphate binding2.31E-03
62GO:0035252: UDP-xylosyltransferase activity2.31E-03
63GO:0036402: proteasome-activating ATPase activity2.31E-03
64GO:0004124: cysteine synthase activity2.77E-03
65GO:0004747: ribokinase activity2.77E-03
66GO:0070403: NAD+ binding2.77E-03
67GO:0016831: carboxy-lyase activity3.26E-03
68GO:0008235: metalloexopeptidase activity3.26E-03
69GO:0009881: photoreceptor activity3.26E-03
70GO:0004620: phospholipase activity3.26E-03
71GO:0004869: cysteine-type endopeptidase inhibitor activity3.78E-03
72GO:0008865: fructokinase activity3.78E-03
73GO:0004525: ribonuclease III activity3.78E-03
74GO:0004034: aldose 1-epimerase activity3.78E-03
75GO:0004630: phospholipase D activity4.33E-03
76GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity4.33E-03
77GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity4.90E-03
78GO:0042802: identical protein binding5.35E-03
79GO:0045309: protein phosphorylated amino acid binding5.50E-03
80GO:0004713: protein tyrosine kinase activity6.12E-03
81GO:0015020: glucuronosyltransferase activity6.12E-03
82GO:0004673: protein histidine kinase activity6.12E-03
83GO:0004177: aminopeptidase activity6.77E-03
84GO:0019904: protein domain specific binding6.77E-03
85GO:0004521: endoribonuclease activity7.44E-03
86GO:0004022: alcohol dehydrogenase (NAD) activity8.13E-03
87GO:0004867: serine-type endopeptidase inhibitor activity9.58E-03
88GO:0017025: TBP-class protein binding9.58E-03
89GO:0030553: cGMP binding9.58E-03
90GO:0030552: cAMP binding9.58E-03
91GO:0043130: ubiquitin binding1.11E-02
92GO:0005216: ion channel activity1.19E-02
93GO:0015079: potassium ion transmembrane transporter activity1.19E-02
94GO:0043424: protein histidine kinase binding1.19E-02
95GO:0005345: purine nucleobase transmembrane transporter activity1.19E-02
96GO:0030246: carbohydrate binding1.25E-02
97GO:0004672: protein kinase activity1.33E-02
98GO:0005516: calmodulin binding1.48E-02
99GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen1.62E-02
100GO:0005515: protein binding1.62E-02
101GO:0005525: GTP binding1.69E-02
102GO:0005249: voltage-gated potassium channel activity1.72E-02
103GO:0030551: cyclic nucleotide binding1.72E-02
104GO:0005451: monovalent cation:proton antiporter activity1.72E-02
105GO:0030170: pyridoxal phosphate binding1.75E-02
106GO:0015144: carbohydrate transmembrane transporter activity1.89E-02
107GO:0005355: glucose transmembrane transporter activity1.91E-02
108GO:0016853: isomerase activity1.91E-02
109GO:0010181: FMN binding1.91E-02
110GO:0015299: solute:proton antiporter activity1.91E-02
111GO:0004872: receptor activity2.00E-02
112GO:0005351: sugar:proton symporter activity2.13E-02
113GO:0005506: iron ion binding2.25E-02
114GO:0000156: phosphorelay response regulator activity2.31E-02
115GO:0015385: sodium:proton antiporter activity2.31E-02
116GO:0008375: acetylglucosaminyltransferase activity2.95E-02
117GO:0009931: calcium-dependent protein serine/threonine kinase activity2.95E-02
118GO:0004683: calmodulin-dependent protein kinase activity3.07E-02
119GO:0030247: polysaccharide binding3.07E-02
120GO:0046982: protein heterodimerization activity3.31E-02
121GO:0005096: GTPase activator activity3.42E-02
122GO:0030145: manganese ion binding3.66E-02
123GO:0050897: cobalt ion binding3.66E-02
124GO:0003697: single-stranded DNA binding3.91E-02
125GO:0000149: SNARE binding4.16E-02
126GO:0008422: beta-glucosidase activity4.16E-02
127GO:0004497: monooxygenase activity4.17E-02
128GO:0005484: SNAP receptor activity4.68E-02
129GO:0005507: copper ion binding4.71E-02
RankGO TermAdjusted P value
1GO:0031981: nuclear lumen0.00E+00
2GO:0005785: signal recognition particle receptor complex0.00E+00
3GO:0071008: U2-type post-mRNA release spliceosomal complex0.00E+00
4GO:0005886: plasma membrane1.78E-09
5GO:0005783: endoplasmic reticulum5.77E-06
6GO:0005774: vacuolar membrane8.72E-05
7GO:0030173: integral component of Golgi membrane1.08E-04
8GO:0045252: oxoglutarate dehydrogenase complex2.13E-04
9GO:0016021: integral component of membrane2.16E-04
10GO:0005802: trans-Golgi network3.11E-04
11GO:0005789: endoplasmic reticulum membrane3.94E-04
12GO:0005950: anthranilate synthase complex4.76E-04
13GO:0005794: Golgi apparatus4.92E-04
14GO:0042406: extrinsic component of endoplasmic reticulum membrane7.74E-04
15GO:0071782: endoplasmic reticulum tubular network1.10E-03
16GO:0005776: autophagosome1.47E-03
17GO:0016020: membrane1.52E-03
18GO:0005829: cytosol2.30E-03
19GO:0030140: trans-Golgi network transport vesicle2.31E-03
20GO:0009506: plasmodesma2.38E-03
21GO:0031597: cytosolic proteasome complex2.77E-03
22GO:0031595: nuclear proteasome complex3.26E-03
23GO:0030687: preribosome, large subunit precursor3.26E-03
24GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane3.78E-03
25GO:0012507: ER to Golgi transport vesicle membrane3.78E-03
26GO:0005786: signal recognition particle, endoplasmic reticulum targeting4.33E-03
27GO:0005779: integral component of peroxisomal membrane4.33E-03
28GO:0000786: nucleosome4.84E-03
29GO:0031901: early endosome membrane4.90E-03
30GO:0008540: proteasome regulatory particle, base subcomplex5.50E-03
31GO:0005665: DNA-directed RNA polymerase II, core complex7.44E-03
32GO:0005773: vacuole7.71E-03
33GO:0030176: integral component of endoplasmic reticulum membrane9.58E-03
34GO:0010008: endosome membrane1.08E-02
35GO:0005737: cytoplasm1.15E-02
36GO:0031410: cytoplasmic vesicle1.36E-02
37GO:0030136: clathrin-coated vesicle1.62E-02
38GO:0005770: late endosome1.81E-02
39GO:0005768: endosome1.97E-02
40GO:0031965: nuclear membrane2.00E-02
41GO:0000145: exocyst2.20E-02
42GO:0071944: cell periphery2.31E-02
43GO:0005778: peroxisomal membrane2.52E-02
44GO:0000932: P-body2.73E-02
45GO:0005618: cell wall2.80E-02
46GO:0009505: plant-type cell wall3.21E-02
47GO:0005777: peroxisome3.62E-02
48GO:0000325: plant-type vacuole3.66E-02
49GO:0031902: late endosome membrane4.41E-02
50GO:0031201: SNARE complex4.41E-02
Gene type



Gene DE type