co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G46550

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046677: response to antibiotic	0.00E+00
2	GO:0090279: regulation of calcium ion import	0.00E+00
3	GO:1903508: positive regulation of nucleic acid-templated transcription	0.00E+00
4	GO:0071474: cellular hyperosmotic response	0.00E+00
5	GO:0070584: mitochondrion morphogenesis	0.00E+00
6	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
7	GO:0070979: protein K11-linked ubiquitination	0.00E+00
8	GO:0015970: guanosine tetraphosphate biosynthetic process	0.00E+00
9	GO:1902171: regulation of tocopherol cyclase activity	0.00E+00
10	GO:0018002: N-terminal peptidyl-glutamic acid acetylation	1.31E-04
11	GO:0015812: gamma-aminobutyric acid transport	1.31E-04
12	GO:0006475: internal protein amino acid acetylation	1.31E-04
13	GO:0006474: N-terminal protein amino acid acetylation	1.31E-04
14	GO:0017198: N-terminal peptidyl-serine acetylation	1.31E-04
15	GO:0080065: 4-alpha-methyl-delta7-sterol oxidation	1.31E-04
16	GO:0080173: male-female gamete recognition during double fertilization	1.31E-04
17	GO:0015995: chlorophyll biosynthetic process	1.66E-04
18	GO:0007623: circadian rhythm	2.38E-04
19	GO:0051170: nuclear import	3.03E-04
20	GO:0050992: dimethylallyl diphosphate biosynthetic process	3.03E-04
21	GO:0071712: ER-associated misfolded protein catabolic process	3.03E-04
22	GO:0051262: protein tetramerization	3.03E-04
23	GO:0032527: protein exit from endoplasmic reticulum	3.03E-04
24	GO:0009640: photomorphogenesis	3.72E-04
25	GO:0010114: response to red light	3.72E-04
26	GO:0032940: secretion by cell	4.99E-04
27	GO:0031145: anaphase-promoting complex-dependent catabolic process	4.99E-04
28	GO:0090153: regulation of sphingolipid biosynthetic process	4.99E-04
29	GO:1902448: positive regulation of shade avoidance	4.99E-04
30	GO:0048511: rhythmic process	5.61E-04
31	GO:0061077: chaperone-mediated protein folding	5.61E-04
32	GO:0009416: response to light stimulus	6.01E-04
33	GO:0010017: red or far-red light signaling pathway	6.13E-04
34	GO:0030071: regulation of mitotic metaphase/anaphase transition	7.14E-04
35	GO:0044211: CTP salvage	7.14E-04
36	GO:0044206: UMP salvage	9.47E-04
37	GO:2000306: positive regulation of photomorphogenesis	9.47E-04
38	GO:0010600: regulation of auxin biosynthetic process	9.47E-04
39	GO:0043097: pyrimidine nucleoside salvage	1.20E-03
40	GO:0016123: xanthophyll biosynthetic process	1.20E-03
41	GO:0032876: negative regulation of DNA endoreduplication	1.20E-03
42	GO:0006206: pyrimidine nucleobase metabolic process	1.47E-03
43	GO:0006655: phosphatidylglycerol biosynthetic process	1.47E-03
44	GO:0000060: protein import into nucleus, translocation	1.47E-03
45	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.47E-03
46	GO:0045962: positive regulation of development, heterochronic	1.47E-03
47	GO:0016126: sterol biosynthetic process	1.58E-03
48	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.76E-03
49	GO:0010077: maintenance of inflorescence meristem identity	1.76E-03
50	GO:0010161: red light signaling pathway	2.06E-03
51	GO:0080186: developmental vegetative growth	2.06E-03
52	GO:0000160: phosphorelay signal transduction system	2.15E-03
53	GO:0010218: response to far red light	2.26E-03
54	GO:0006506: GPI anchor biosynthetic process	2.39E-03
55	GO:0070413: trehalose metabolism in response to stress	2.39E-03
56	GO:0009704: de-etiolation	2.39E-03
57	GO:0032875: regulation of DNA endoreduplication	2.39E-03
58	GO:0050821: protein stabilization	2.39E-03
59	GO:0010928: regulation of auxin mediated signaling pathway	2.39E-03
60	GO:0009637: response to blue light	2.59E-03
61	GO:0007186: G-protein coupled receptor signaling pathway	2.73E-03
62	GO:0010099: regulation of photomorphogenesis	2.73E-03
63	GO:0009827: plant-type cell wall modification	2.73E-03
64	GO:0048507: meristem development	3.08E-03
65	GO:0010206: photosystem II repair	3.08E-03
66	GO:0006970: response to osmotic stress	3.18E-03
67	GO:0048354: mucilage biosynthetic process involved in seed coat development	3.46E-03
68	GO:0042761: very long-chain fatty acid biosynthetic process	3.46E-03
69	GO:0008356: asymmetric cell division	3.46E-03
70	GO:0009723: response to ethylene	3.49E-03
71	GO:0006535: cysteine biosynthetic process from serine	3.84E-03
72	GO:0009688: abscisic acid biosynthetic process	3.84E-03
73	GO:0009641: shade avoidance	3.84E-03
74	GO:0030148: sphingolipid biosynthetic process	4.24E-03
75	GO:0046856: phosphatidylinositol dephosphorylation	4.24E-03
76	GO:0015979: photosynthesis	4.50E-03
77	GO:0016024: CDP-diacylglycerol biosynthetic process	4.65E-03
78	GO:0006355: regulation of transcription, DNA-templated	4.73E-03
79	GO:0009909: regulation of flower development	4.95E-03
80	GO:0006351: transcription, DNA-templated	4.97E-03
81	GO:0018107: peptidyl-threonine phosphorylation	5.08E-03
82	GO:0009718: anthocyanin-containing compound biosynthetic process	5.08E-03
83	GO:0009651: response to salt stress	5.42E-03
84	GO:0009887: animal organ morphogenesis	5.52E-03
85	GO:0009266: response to temperature stimulus	5.52E-03
86	GO:0090351: seedling development	5.97E-03
87	GO:0006629: lipid metabolic process	6.24E-03
88	GO:0006636: unsaturated fatty acid biosynthetic process	6.43E-03
89	GO:0006289: nucleotide-excision repair	6.91E-03
90	GO:0005992: trehalose biosynthetic process	6.91E-03
91	GO:0019344: cysteine biosynthetic process	6.91E-03
92	GO:0009768: photosynthesis, light harvesting in photosystem I	7.40E-03
93	GO:0006874: cellular calcium ion homeostasis	7.40E-03
94	GO:0003333: amino acid transmembrane transport	7.91E-03
95	GO:0009414: response to water deprivation	7.97E-03
96	GO:0055114: oxidation-reduction process	8.24E-03
97	GO:0009686: gibberellin biosynthetic process	8.95E-03
98	GO:0070417: cellular response to cold	1.00E-02
99	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.00E-02
100	GO:0010087: phloem or xylem histogenesis	1.06E-02
101	GO:0010305: leaf vascular tissue pattern formation	1.12E-02
102	GO:0010182: sugar mediated signaling pathway	1.12E-02
103	GO:0010228: vegetative to reproductive phase transition of meristem	1.15E-02
104	GO:0006814: sodium ion transport	1.18E-02
105	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.23E-02
106	GO:0009739: response to gibberellin	1.23E-02
107	GO:0008654: phospholipid biosynthetic process	1.24E-02
108	GO:0009409: response to cold	1.31E-02
109	GO:1901657: glycosyl compound metabolic process	1.42E-02
110	GO:0009567: double fertilization forming a zygote and endosperm	1.49E-02
111	GO:0009911: positive regulation of flower development	1.68E-02
112	GO:0009658: chloroplast organization	1.71E-02
113	GO:0010029: regulation of seed germination	1.75E-02
114	GO:0048573: photoperiodism, flowering	1.89E-02
115	GO:0006950: response to stress	1.89E-02
116	GO:0006511: ubiquitin-dependent protein catabolic process	1.91E-02
117	GO:0016311: dephosphorylation	1.96E-02
118	GO:0018298: protein-chromophore linkage	2.03E-02
119	GO:0080167: response to karrikin	2.12E-02
120	GO:0006811: ion transport	2.18E-02
121	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.19E-02
122	GO:0009631: cold acclimation	2.25E-02
123	GO:0009910: negative regulation of flower development	2.25E-02
124	GO:0046777: protein autophosphorylation	2.26E-02
125	GO:0044550: secondary metabolite biosynthetic process	2.30E-02
126	GO:0006865: amino acid transport	2.33E-02
127	GO:0045892: negative regulation of transcription, DNA-templated	2.57E-02
128	GO:0009737: response to abscisic acid	2.57E-02
129	GO:0008283: cell proliferation	2.88E-02
130	GO:0051707: response to other organism	2.88E-02
131	GO:0008643: carbohydrate transport	3.05E-02
132	GO:0009408: response to heat	3.12E-02
133	GO:0009965: leaf morphogenesis	3.13E-02
134	GO:0016310: phosphorylation	3.16E-02
135	GO:0048364: root development	3.26E-02
136	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	3.30E-02
137	GO:0000165: MAPK cascade	3.30E-02
138	GO:0009585: red, far-red light phototransduction	3.56E-02
139	GO:0009740: gibberellic acid mediated signaling pathway	4.39E-02
140	GO:0009553: embryo sac development	4.48E-02
141	GO:0009624: response to nematode	4.58E-02
142	GO:0018105: peptidyl-serine phosphorylation	4.67E-02
143	GO:0009908: flower development	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0004567: beta-mannosidase activity	0.00E+00
2	GO:0080082: esculin beta-glucosidase activity	0.00E+00
3	GO:0051745: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity	0.00E+00
4	GO:0009899: ent-kaurene synthase activity	0.00E+00
5	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
6	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
7	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
8	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
9	GO:0009540: zeaxanthin epoxidase [overall] activity	0.00E+00
10	GO:0004740: pyruvate dehydrogenase (acetyl-transferring) kinase activity	0.00E+00
11	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
12	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	1.31E-04
13	GO:1990190: peptide-glutamate-N-acetyltransferase activity	1.31E-04
14	GO:0052631: sphingolipid delta-8 desaturase activity	1.31E-04
15	GO:0046429: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity	1.31E-04
16	GO:0015185: gamma-aminobutyric acid transmembrane transporter activity	1.31E-04
17	GO:0008158: hedgehog receptor activity	1.31E-04
18	GO:0005227: calcium activated cation channel activity	1.31E-04
19	GO:0080079: cellobiose glucosidase activity	1.31E-04
20	GO:1990189: peptide-serine-N-acetyltransferase activity	1.31E-04
21	GO:0016630: protochlorophyllide reductase activity	3.03E-04
22	GO:0008728: GTP diphosphokinase activity	3.03E-04
23	GO:0015180: L-alanine transmembrane transporter activity	3.03E-04
24	GO:0050017: L-3-cyanoalanine synthase activity	3.03E-04
25	GO:0004103: choline kinase activity	3.03E-04
26	GO:0080045: quercetin 3'-O-glucosyltransferase activity	3.03E-04
27	GO:0044390: ubiquitin-like protein conjugating enzyme binding	3.03E-04
28	GO:0016805: dipeptidase activity	4.99E-04
29	GO:0004180: carboxypeptidase activity	4.99E-04
30	GO:0015181: arginine transmembrane transporter activity	7.14E-04
31	GO:0015189: L-lysine transmembrane transporter activity	7.14E-04
32	GO:0000254: C-4 methylsterol oxidase activity	7.14E-04
33	GO:0004506: squalene monooxygenase activity	9.47E-04
34	GO:0070628: proteasome binding	9.47E-04
35	GO:0004930: G-protein coupled receptor activity	9.47E-04
36	GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway	9.47E-04
37	GO:0004845: uracil phosphoribosyltransferase activity	9.47E-04
38	GO:0005313: L-glutamate transmembrane transporter activity	9.47E-04
39	GO:0051538: 3 iron, 4 sulfur cluster binding	1.20E-03
40	GO:0000156: phosphorelay response regulator activity	1.25E-03
41	GO:0031593: polyubiquitin binding	1.47E-03
42	GO:0004462: lactoylglutathione lyase activity	1.47E-03
43	GO:0080046: quercetin 4'-O-glucosyltransferase activity	1.47E-03
44	GO:0004605: phosphatidate cytidylyltransferase activity	1.47E-03
45	GO:0005261: cation channel activity	1.76E-03
46	GO:0009927: histidine phosphotransfer kinase activity	1.76E-03
47	GO:0004849: uridine kinase activity	1.76E-03
48	GO:0004602: glutathione peroxidase activity	1.76E-03
49	GO:0004124: cysteine synthase activity	1.76E-03
50	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	2.73E-03
51	GO:0071949: FAD binding	3.08E-03
52	GO:0000989: transcription factor activity, transcription factor binding	3.08E-03
53	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	3.84E-03
54	GO:0044183: protein binding involved in protein folding	4.24E-03
55	GO:0047372: acylglycerol lipase activity	4.24E-03
56	GO:0003700: transcription factor activity, sequence-specific DNA binding	4.56E-03
57	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	4.65E-03
58	GO:0015171: amino acid transmembrane transporter activity	4.95E-03
59	GO:0031625: ubiquitin protein ligase binding	4.95E-03
60	GO:0004565: beta-galactosidase activity	5.08E-03
61	GO:0004022: alcohol dehydrogenase (NAD) activity	5.08E-03
62	GO:0005315: inorganic phosphate transmembrane transporter activity	5.08E-03
63	GO:0005217: intracellular ligand-gated ion channel activity	5.97E-03
64	GO:0003712: transcription cofactor activity	5.97E-03
65	GO:0004970: ionotropic glutamate receptor activity	5.97E-03
66	GO:0004190: aspartic-type endopeptidase activity	5.97E-03
67	GO:0031409: pigment binding	6.43E-03
68	GO:0008134: transcription factor binding	6.91E-03
69	GO:0043130: ubiquitin binding	6.91E-03
70	GO:0005216: ion channel activity	7.40E-03
71	GO:0003677: DNA binding	7.63E-03
72	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	8.17E-03
73	GO:0022891: substrate-specific transmembrane transporter activity	8.95E-03
74	GO:0008514: organic anion transmembrane transporter activity	9.49E-03
75	GO:0015144: carbohydrate transmembrane transporter activity	9.52E-03
76	GO:0008270: zinc ion binding	1.11E-02
77	GO:0008536: Ran GTPase binding	1.12E-02
78	GO:0008080: N-acetyltransferase activity	1.12E-02
79	GO:0004842: ubiquitin-protein transferase activity	1.35E-02
80	GO:0004672: protein kinase activity	1.48E-02
81	GO:0016791: phosphatase activity	1.49E-02
82	GO:0003684: damaged DNA binding	1.49E-02
83	GO:0016168: chlorophyll binding	1.75E-02
84	GO:0102483: scopolin beta-glucosidase activity	1.89E-02
85	GO:0004497: monooxygenase activity	2.12E-02
86	GO:0061630: ubiquitin protein ligase activity	2.23E-02
87	GO:0003993: acid phosphatase activity	2.48E-02
88	GO:0008422: beta-glucosidase activity	2.56E-02
89	GO:0016787: hydrolase activity	2.59E-02
90	GO:0046872: metal ion binding	2.87E-02
91	GO:0005506: iron ion binding	3.08E-02
92	GO:0015293: symporter activity	3.13E-02
93	GO:0004674: protein serine/threonine kinase activity	3.23E-02
94	GO:0016298: lipase activity	3.65E-02
95	GO:0080043: quercetin 3-O-glucosyltransferase activity	4.29E-02
96	GO:0080044: quercetin 7-O-glucosyltransferase activity	4.29E-02
97	GO:0016491: oxidoreductase activity	4.41E-02
98	GO:0016746: transferase activity, transferring acyl groups	4.67E-02

Rank	GO Term	Adjusted P value
1	GO:0009534: chloroplast thylakoid	2.26E-05
2	GO:0031415: NatA complex	3.03E-04
3	GO:0009535: chloroplast thylakoid membrane	6.92E-04
4	GO:0036513: Derlin-1 retrotranslocation complex	7.14E-04
5	GO:0030660: Golgi-associated vesicle membrane	9.47E-04
6	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	9.47E-04
7	GO:0009941: chloroplast envelope	1.12E-03
8	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	2.39E-03
9	GO:0005680: anaphase-promoting complex	3.08E-03
10	GO:0016604: nuclear body	3.46E-03
11	GO:0031966: mitochondrial membrane	4.17E-03
12	GO:0005765: lysosomal membrane	4.24E-03
13	GO:0005789: endoplasmic reticulum membrane	4.33E-03
14	GO:0009570: chloroplast stroma	7.15E-03
15	GO:0010287: plastoglobule	7.53E-03
16	GO:0009507: chloroplast	8.93E-03
17	GO:0009522: photosystem I	1.18E-02
18	GO:0009523: photosystem II	1.24E-02
19	GO:0016021: integral component of membrane	1.53E-02
20	GO:0009579: thylakoid	1.62E-02
21	GO:0000151: ubiquitin ligase complex	2.03E-02
22	GO:0009707: chloroplast outer membrane	2.03E-02
23	GO:0005783: endoplasmic reticulum	2.23E-02
24	GO:0031977: thylakoid lumen	2.72E-02
25	GO:0016607: nuclear speck	4.11E-02
26	GO:0010008: endosome membrane	4.11E-02
27	GO:0009706: chloroplast inner membrane	4.58E-02
28	GO:0005634: nucleus	4.59E-02