Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G46400

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006793: phosphorus metabolic process0.00E+00
2GO:0051238: sequestering of metal ion0.00E+00
3GO:0072722: response to amitrole0.00E+00
4GO:0070212: protein poly-ADP-ribosylation0.00E+00
5GO:0045792: negative regulation of cell size0.00E+00
6GO:0042430: indole-containing compound metabolic process0.00E+00
7GO:0002376: immune system process0.00E+00
8GO:0030149: sphingolipid catabolic process0.00E+00
9GO:0009617: response to bacterium2.34E-11
10GO:0009626: plant-type hypersensitive response6.41E-09
11GO:0009627: systemic acquired resistance7.67E-08
12GO:0010200: response to chitin1.05E-07
13GO:0071456: cellular response to hypoxia1.13E-07
14GO:0051707: response to other organism6.16E-07
15GO:0002237: response to molecule of bacterial origin1.24E-06
16GO:0042742: defense response to bacterium1.65E-06
17GO:0010120: camalexin biosynthetic process8.38E-06
18GO:0006979: response to oxidative stress6.93E-05
19GO:0000304: response to singlet oxygen7.56E-05
20GO:0009697: salicylic acid biosynthetic process7.56E-05
21GO:0006468: protein phosphorylation1.75E-04
22GO:0010150: leaf senescence1.89E-04
23GO:0031540: regulation of anthocyanin biosynthetic process2.52E-04
24GO:0006102: isocitrate metabolic process2.52E-04
25GO:0030091: protein repair2.52E-04
26GO:0015760: glucose-6-phosphate transport2.65E-04
27GO:1990641: response to iron ion starvation2.65E-04
28GO:0099132: ATP hydrolysis coupled cation transmembrane transport2.65E-04
29GO:0009609: response to symbiotic bacterium2.65E-04
30GO:0010230: alternative respiration2.65E-04
31GO:0010112: regulation of systemic acquired resistance3.74E-04
32GO:0006952: defense response4.27E-04
33GO:0009615: response to virus4.98E-04
34GO:0006032: chitin catabolic process5.20E-04
35GO:0009870: defense response signaling pathway, resistance gene-dependent5.20E-04
36GO:0009816: defense response to bacterium, incompatible interaction5.35E-04
37GO:0051592: response to calcium ion5.83E-04
38GO:0080151: positive regulation of salicylic acid mediated signaling pathway5.83E-04
39GO:0010618: aerenchyma formation5.83E-04
40GO:0090057: root radial pattern formation5.83E-04
41GO:0051788: response to misfolded protein5.83E-04
42GO:0044419: interspecies interaction between organisms5.83E-04
43GO:0006101: citrate metabolic process5.83E-04
44GO:0031349: positive regulation of defense response5.83E-04
45GO:0015712: hexose phosphate transport5.83E-04
46GO:0019752: carboxylic acid metabolic process5.83E-04
47GO:0000272: polysaccharide catabolic process5.99E-04
48GO:0009409: response to cold6.41E-04
49GO:0035436: triose phosphate transmembrane transport9.47E-04
50GO:0010351: lithium ion transport9.47E-04
51GO:0010272: response to silver ion9.47E-04
52GO:0048281: inflorescence morphogenesis9.47E-04
53GO:0015714: phosphoenolpyruvate transport9.47E-04
54GO:0010581: regulation of starch biosynthetic process9.47E-04
55GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway9.47E-04
56GO:0034051: negative regulation of plant-type hypersensitive response9.47E-04
57GO:1900140: regulation of seedling development9.47E-04
58GO:0070588: calcium ion transmembrane transport9.75E-04
59GO:0006099: tricarboxylic acid cycle9.91E-04
60GO:0009408: response to heat1.26E-03
61GO:0006882: cellular zinc ion homeostasis1.35E-03
62GO:0046836: glycolipid transport1.35E-03
63GO:0048194: Golgi vesicle budding1.35E-03
64GO:0043207: response to external biotic stimulus1.35E-03
65GO:0009647: skotomorphogenesis1.35E-03
66GO:0016998: cell wall macromolecule catabolic process1.44E-03
67GO:0080142: regulation of salicylic acid biosynthetic process1.81E-03
68GO:0010109: regulation of photosynthesis1.81E-03
69GO:0060548: negative regulation of cell death1.81E-03
70GO:0045727: positive regulation of translation1.81E-03
71GO:0006536: glutamate metabolic process1.81E-03
72GO:0010508: positive regulation of autophagy1.81E-03
73GO:0015713: phosphoglycerate transport1.81E-03
74GO:0010224: response to UV-B1.96E-03
75GO:0006097: glyoxylate cycle2.31E-03
76GO:0034052: positive regulation of plant-type hypersensitive response2.31E-03
77GO:0045487: gibberellin catabolic process2.31E-03
78GO:0009749: response to glucose2.71E-03
79GO:0046686: response to cadmium ion2.82E-03
80GO:0002238: response to molecule of fungal origin2.85E-03
81GO:0009643: photosynthetic acclimation2.85E-03
82GO:0006561: proline biosynthetic process2.85E-03
83GO:0010942: positive regulation of cell death2.85E-03
84GO:0015691: cadmium ion transport2.85E-03
85GO:0043248: proteasome assembly2.85E-03
86GO:0060918: auxin transport2.85E-03
87GO:0000302: response to reactive oxygen species2.90E-03
88GO:0010193: response to ozone2.90E-03
89GO:0009624: response to nematode2.93E-03
90GO:0010555: response to mannitol3.43E-03
91GO:0010310: regulation of hydrogen peroxide metabolic process3.43E-03
92GO:2000067: regulation of root morphogenesis3.43E-03
93GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response3.43E-03
94GO:0051607: defense response to virus3.96E-03
95GO:0009610: response to symbiotic fungus4.04E-03
96GO:0048528: post-embryonic root development4.04E-03
97GO:0043090: amino acid import4.04E-03
98GO:1900056: negative regulation of leaf senescence4.04E-03
99GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway4.04E-03
100GO:0070370: cellular heat acclimation4.04E-03
101GO:0030026: cellular manganese ion homeostasis4.04E-03
102GO:0001666: response to hypoxia4.19E-03
103GO:0009787: regulation of abscisic acid-activated signaling pathway4.69E-03
104GO:0043068: positive regulation of programmed cell death4.69E-03
105GO:0009751: response to salicylic acid5.28E-03
106GO:0010204: defense response signaling pathway, resistance gene-independent5.37E-03
107GO:0030968: endoplasmic reticulum unfolded protein response5.37E-03
108GO:0043562: cellular response to nitrogen levels5.37E-03
109GO:0006075: (1->3)-beta-D-glucan biosynthetic process5.37E-03
110GO:0007186: G-protein coupled receptor signaling pathway5.37E-03
111GO:0010497: plasmodesmata-mediated intercellular transport5.37E-03
112GO:0010262: somatic embryogenesis5.37E-03
113GO:0008219: cell death5.46E-03
114GO:0040008: regulation of growth5.54E-03
115GO:0009651: response to salt stress5.56E-03
116GO:0009737: response to abscisic acid5.57E-03
117GO:0009407: toxin catabolic process6.03E-03
118GO:0051865: protein autoubiquitination6.09E-03
119GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process6.78E-03
120GO:0010205: photoinhibition6.83E-03
121GO:2000280: regulation of root development6.83E-03
122GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway6.83E-03
123GO:0009688: abscisic acid biosynthetic process7.61E-03
124GO:0010162: seed dormancy process7.61E-03
125GO:0055062: phosphate ion homeostasis7.61E-03
126GO:0007064: mitotic sister chromatid cohesion7.61E-03
127GO:0009750: response to fructose8.42E-03
128GO:0009682: induced systemic resistance8.42E-03
129GO:0009744: response to sucrose8.94E-03
130GO:0006890: retrograde vesicle-mediated transport, Golgi to ER9.26E-03
131GO:0012501: programmed cell death9.26E-03
132GO:0006820: anion transport9.26E-03
133GO:0002213: defense response to insect9.26E-03
134GO:0015706: nitrate transport9.26E-03
135GO:0009718: anthocyanin-containing compound biosynthetic process1.01E-02
136GO:0009636: response to toxic substance1.01E-02
137GO:0006855: drug transmembrane transport1.04E-02
138GO:0034605: cellular response to heat1.10E-02
139GO:0050832: defense response to fungus1.13E-02
140GO:0009969: xyloglucan biosynthetic process1.20E-02
141GO:0042343: indole glucosinolate metabolic process1.20E-02
142GO:0010167: response to nitrate1.20E-02
143GO:0006486: protein glycosylation1.21E-02
144GO:0000162: tryptophan biosynthetic process1.29E-02
145GO:0034976: response to endoplasmic reticulum stress1.29E-02
146GO:0080167: response to karrikin1.35E-02
147GO:0005992: trehalose biosynthetic process1.39E-02
148GO:0000027: ribosomal large subunit assembly1.39E-02
149GO:0009863: salicylic acid mediated signaling pathway1.39E-02
150GO:0009733: response to auxin1.44E-02
151GO:0006874: cellular calcium ion homeostasis1.49E-02
152GO:0098542: defense response to other organism1.59E-02
153GO:0031348: negative regulation of defense response1.70E-02
154GO:0009814: defense response, incompatible interaction1.70E-02
155GO:0009411: response to UV1.81E-02
156GO:0009625: response to insect1.81E-02
157GO:0009686: gibberellin biosynthetic process1.81E-02
158GO:0010091: trichome branching1.92E-02
159GO:0042631: cellular response to water deprivation2.15E-02
160GO:0042391: regulation of membrane potential2.15E-02
161GO:0010197: polar nucleus fusion2.26E-02
162GO:0008360: regulation of cell shape2.26E-02
163GO:0009958: positive gravitropism2.26E-02
164GO:0006520: cellular amino acid metabolic process2.26E-02
165GO:0048544: recognition of pollen2.38E-02
166GO:0006814: sodium ion transport2.38E-02
167GO:0042752: regulation of circadian rhythm2.38E-02
168GO:0009646: response to absence of light2.38E-02
169GO:0010183: pollen tube guidance2.51E-02
170GO:0048825: cotyledon development2.51E-02
171GO:0032502: developmental process2.76E-02
172GO:0030163: protein catabolic process2.88E-02
173GO:0010252: auxin homeostasis3.02E-02
174GO:0009639: response to red or far red light3.02E-02
175GO:0007166: cell surface receptor signaling pathway3.41E-02
176GO:0009414: response to water deprivation3.54E-02
177GO:0042128: nitrate assimilation3.70E-02
178GO:0016049: cell growth3.98E-02
179GO:0009817: defense response to fungus, incompatible interaction4.13E-02
180GO:0009832: plant-type cell wall biogenesis4.28E-02
181GO:0006499: N-terminal protein myristoylation4.43E-02
182GO:0006811: ion transport4.43E-02
183GO:0010043: response to zinc ion4.58E-02
184GO:0007568: aging4.58E-02
185GO:0010119: regulation of stomatal movement4.58E-02
186GO:0009611: response to wounding4.62E-02
187GO:0006865: amino acid transport4.73E-02
188GO:0045087: innate immune response4.88E-02
RankGO TermAdjusted P value
1GO:1990837: sequence-specific double-stranded DNA binding0.00E+00
2GO:0008117: sphinganine-1-phosphate aldolase activity0.00E+00
3GO:0047720: indoleacetaldoxime dehydratase activity0.00E+00
4GO:0005516: calmodulin binding2.41E-05
5GO:0047631: ADP-ribose diphosphatase activity7.56E-05
6GO:0004674: protein serine/threonine kinase activity8.79E-05
7GO:0000210: NAD+ diphosphatase activity1.10E-04
8GO:0033743: peptide-methionine (R)-S-oxide reductase activity1.51E-04
9GO:0005509: calcium ion binding2.42E-04
10GO:0031127: alpha-(1,2)-fucosyltransferase activity2.65E-04
11GO:0080042: ADP-glucose pyrophosphohydrolase activity2.65E-04
12GO:0004048: anthranilate phosphoribosyltransferase activity2.65E-04
13GO:0004591: oxoglutarate dehydrogenase (succinyl-transferring) activity2.65E-04
14GO:0004568: chitinase activity5.20E-04
15GO:0045543: gibberellin 2-beta-dioxygenase activity5.83E-04
16GO:0080041: ADP-ribose pyrophosphohydrolase activity5.83E-04
17GO:0003994: aconitate hydratase activity5.83E-04
18GO:0015152: glucose-6-phosphate transmembrane transporter activity5.83E-04
19GO:0017110: nucleoside-diphosphatase activity5.83E-04
20GO:0048531: beta-1,3-galactosyltransferase activity5.83E-04
21GO:0004338: glucan exo-1,3-beta-glucosidase activity5.83E-04
22GO:0005388: calcium-transporting ATPase activity7.76E-04
23GO:0016614: oxidoreductase activity, acting on CH-OH group of donors8.37E-04
24GO:0071917: triose-phosphate transmembrane transporter activity9.47E-04
25GO:0001664: G-protein coupled receptor binding9.47E-04
26GO:0031683: G-protein beta/gamma-subunit complex binding9.47E-04
27GO:0004190: aspartic-type endopeptidase activity9.75E-04
28GO:0008061: chitin binding9.75E-04
29GO:0004351: glutamate decarboxylase activity1.35E-03
30GO:0017089: glycolipid transporter activity1.35E-03
31GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity1.35E-03
32GO:0035529: NADH pyrophosphatase activity1.35E-03
33GO:0004449: isocitrate dehydrogenase (NAD+) activity1.35E-03
34GO:0004108: citrate (Si)-synthase activity1.35E-03
35GO:0004298: threonine-type endopeptidase activity1.44E-03
36GO:0051287: NAD binding1.63E-03
37GO:0010279: indole-3-acetic acid amido synthetase activity1.81E-03
38GO:0015120: phosphoglycerate transmembrane transporter activity1.81E-03
39GO:0015368: calcium:cation antiporter activity1.81E-03
40GO:0051861: glycolipid binding1.81E-03
41GO:0015369: calcium:proton antiporter activity1.81E-03
42GO:0005524: ATP binding1.81E-03
43GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity2.31E-03
44GO:0050660: flavin adenine dinucleotide binding2.68E-03
45GO:0030976: thiamine pyrophosphate binding2.85E-03
46GO:0008113: peptide-methionine (S)-S-oxide reductase activity3.43E-03
47GO:0004012: phospholipid-translocating ATPase activity3.43E-03
48GO:0004143: diacylglycerol kinase activity4.04E-03
49GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity4.04E-03
50GO:0016831: carboxy-lyase activity4.04E-03
51GO:0004871: signal transducer activity4.21E-03
52GO:0015491: cation:cation antiporter activity4.69E-03
53GO:0004714: transmembrane receptor protein tyrosine kinase activity4.69E-03
54GO:0015288: porin activity4.69E-03
55GO:0030247: polysaccharide binding4.93E-03
56GO:0003843: 1,3-beta-D-glucan synthase activity5.37E-03
57GO:0008308: voltage-gated anion channel activity5.37E-03
58GO:0015297: antiporter activity5.54E-03
59GO:0015238: drug transmembrane transporter activity5.74E-03
60GO:0016301: kinase activity6.09E-03
61GO:0008417: fucosyltransferase activity6.09E-03
62GO:0030145: manganese ion binding6.32E-03
63GO:0015112: nitrate transmembrane transporter activity6.83E-03
64GO:0008559: xenobiotic-transporting ATPase activity8.42E-03
65GO:0004364: glutathione transferase activity8.58E-03
66GO:0005315: inorganic phosphate transmembrane transporter activity1.01E-02
67GO:0005262: calcium channel activity1.01E-02
68GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.01E-02
69GO:0004022: alcohol dehydrogenase (NAD) activity1.01E-02
70GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.10E-02
71GO:0030552: cAMP binding1.20E-02
72GO:0030553: cGMP binding1.20E-02
73GO:0003712: transcription cofactor activity1.20E-02
74GO:0016298: lipase activity1.25E-02
75GO:0008233: peptidase activity1.32E-02
76GO:0045735: nutrient reservoir activity1.43E-02
77GO:0005216: ion channel activity1.49E-02
78GO:0016757: transferase activity, transferring glycosyl groups1.51E-02
79GO:0033612: receptor serine/threonine kinase binding1.59E-02
80GO:0008810: cellulase activity1.81E-02
81GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen1.87E-02
82GO:0003756: protein disulfide isomerase activity1.92E-02
83GO:0004499: N,N-dimethylaniline monooxygenase activity1.92E-02
84GO:0030246: carbohydrate binding2.01E-02
85GO:0005249: voltage-gated potassium channel activity2.15E-02
86GO:0030551: cyclic nucleotide binding2.15E-02
87GO:0004672: protein kinase activity2.28E-02
88GO:0030170: pyridoxal phosphate binding2.40E-02
89GO:0009055: electron carrier activity2.41E-02
90GO:0004675: transmembrane receptor protein serine/threonine kinase activity2.78E-02
91GO:0004683: calmodulin-dependent protein kinase activity3.84E-02
92GO:0004806: triglyceride lipase activity3.84E-02
93GO:0008757: S-adenosylmethionine-dependent methyltransferase activity3.98E-02
94GO:0004222: metalloendopeptidase activity4.43E-02
95GO:0008168: methyltransferase activity4.43E-02
96GO:0000287: magnesium ion binding4.51E-02
97GO:0050897: cobalt ion binding4.58E-02
RankGO TermAdjusted P value
1GO:0005886: plasma membrane2.58E-06
2GO:0019773: proteasome core complex, alpha-subunit complex3.10E-04
3GO:0016021: integral component of membrane6.22E-04
4GO:0005741: mitochondrial outer membrane1.44E-03
5GO:0005839: proteasome core complex1.44E-03
6GO:0030660: Golgi-associated vesicle membrane1.81E-03
7GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane1.81E-03
8GO:0000502: proteasome complex1.87E-03
9GO:0005783: endoplasmic reticulum2.23E-03
10GO:0005618: cell wall3.12E-03
11GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane4.69E-03
12GO:0046930: pore complex5.37E-03
13GO:0000148: 1,3-beta-D-glucan synthase complex5.37E-03
14GO:0005774: vacuolar membrane5.99E-03
15GO:0031090: organelle membrane6.09E-03
16GO:0000325: plant-type vacuole6.32E-03
17GO:0048046: apoplast6.71E-03
18GO:0005794: Golgi apparatus7.46E-03
19GO:0031225: anchored component of membrane7.52E-03
20GO:0005740: mitochondrial envelope7.61E-03
21GO:0046658: anchored component of plasma membrane8.41E-03
22GO:0005765: lysosomal membrane8.42E-03
23GO:0008541: proteasome regulatory particle, lid subcomplex8.42E-03
24GO:0031012: extracellular matrix1.01E-02
25GO:0009504: cell plate2.51E-02
26GO:0005829: cytosol2.78E-02
27GO:0032580: Golgi cisterna membrane3.02E-02
28GO:0005887: integral component of plasma membrane3.23E-02
29GO:0005788: endoplasmic reticulum lumen3.56E-02
30GO:0000151: ubiquitin ligase complex4.13E-02
31GO:0022626: cytosolic ribosome4.26E-02
Gene type



Gene DE type