Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G46390

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0019918: peptidyl-arginine methylation, to symmetrical-dimethyl arginine0.00E+00
2GO:0006099: tricarboxylic acid cycle1.67E-06
3GO:0045454: cell redox homeostasis1.12E-05
4GO:0006102: isocitrate metabolic process2.41E-05
5GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline2.41E-05
6GO:0080120: CAAX-box protein maturation5.79E-05
7GO:0071586: CAAX-box protein processing5.79E-05
8GO:0033306: phytol metabolic process5.79E-05
9GO:0000162: tryptophan biosynthetic process1.35E-04
10GO:0015914: phospholipid transport1.41E-04
11GO:0008535: respiratory chain complex IV assembly1.41E-04
12GO:0010220: positive regulation of vernalization response1.41E-04
13GO:0080147: root hair cell development1.52E-04
14GO:0055114: oxidation-reduction process2.68E-04
15GO:0019438: aromatic compound biosynthetic process3.49E-04
16GO:0033617: mitochondrial respiratory chain complex IV assembly3.49E-04
17GO:0030163: protein catabolic process4.39E-04
18GO:0009735: response to cytokinin4.65E-04
19GO:0009617: response to bacterium5.31E-04
20GO:0045116: protein neddylation5.92E-04
21GO:0018279: protein N-linked glycosylation via asparagine5.92E-04
22GO:0006796: phosphate-containing compound metabolic process7.24E-04
23GO:0042026: protein refolding8.63E-04
24GO:0006458: 'de novo' protein folding8.63E-04
25GO:0009395: phospholipid catabolic process1.01E-03
26GO:0048658: anther wall tapetum development1.16E-03
27GO:0009699: phenylpropanoid biosynthetic process1.32E-03
28GO:0006754: ATP biosynthetic process1.48E-03
29GO:0019432: triglyceride biosynthetic process1.48E-03
30GO:0080144: amino acid homeostasis1.48E-03
31GO:0006006: glucose metabolic process2.41E-03
32GO:0006807: nitrogen compound metabolic process2.41E-03
33GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process2.41E-03
34GO:0006541: glutamine metabolic process2.62E-03
35GO:0046688: response to copper ion2.82E-03
36GO:0034976: response to endoplasmic reticulum stress3.04E-03
37GO:0000027: ribosomal large subunit assembly3.26E-03
38GO:0006825: copper ion transport3.49E-03
39GO:0010431: seed maturation3.72E-03
40GO:0061077: chaperone-mediated protein folding3.72E-03
41GO:0007005: mitochondrion organization3.95E-03
42GO:0007131: reciprocal meiotic recombination3.95E-03
43GO:0042631: cellular response to water deprivation4.95E-03
44GO:0080022: primary root development4.95E-03
45GO:0071472: cellular response to salt stress5.21E-03
46GO:0010154: fruit development5.21E-03
47GO:0015986: ATP synthesis coupled proton transport5.48E-03
48GO:0032502: developmental process6.31E-03
49GO:0010252: auxin homeostasis6.88E-03
50GO:0016192: vesicle-mediated transport7.38E-03
51GO:0009651: response to salt stress9.62E-03
52GO:0032259: methylation9.93E-03
53GO:0000209: protein polyubiquitination1.36E-02
54GO:0046686: response to cadmium ion1.37E-02
55GO:0009965: leaf morphogenesis1.44E-02
56GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process1.51E-02
57GO:0009664: plant-type cell wall organization1.55E-02
58GO:0010224: response to UV-B1.67E-02
59GO:0009909: regulation of flower development1.75E-02
60GO:0006096: glycolytic process1.84E-02
61GO:0006511: ubiquitin-dependent protein catabolic process2.51E-02
62GO:0009058: biosynthetic process2.55E-02
63GO:0009790: embryo development2.75E-02
64GO:0016036: cellular response to phosphate starvation2.94E-02
65GO:0006508: proteolysis3.21E-02
66GO:0009414: response to water deprivation3.65E-02
67GO:0009826: unidimensional cell growth4.11E-02
68GO:0042254: ribosome biogenesis4.28E-02
69GO:0006970: response to osmotic stress4.45E-02
70GO:0015031: protein transport4.73E-02
RankGO TermAdjusted P value
1GO:0050269: coniferyl-aldehyde dehydrogenase activity0.00E+00
2GO:0052642: lysophosphatidic acid phosphatase activity0.00E+00
3GO:0050220: prostaglandin-E synthase activity0.00E+00
4GO:0005507: copper ion binding1.01E-06
5GO:0004656: procollagen-proline 4-dioxygenase activity1.32E-05
6GO:0004425: indole-3-glycerol-phosphate synthase activity5.79E-05
7GO:0051287: NAD binding1.07E-04
8GO:0004776: succinate-CoA ligase (GDP-forming) activity1.41E-04
9GO:0019781: NEDD8 activating enzyme activity1.41E-04
10GO:0004775: succinate-CoA ligase (ADP-forming) activity1.41E-04
11GO:0004450: isocitrate dehydrogenase (NADP+) activity1.41E-04
12GO:0004049: anthranilate synthase activity2.40E-04
13GO:0008469: histone-arginine N-methyltransferase activity2.40E-04
14GO:0004324: ferredoxin-NADP+ reductase activity2.40E-04
15GO:0016531: copper chaperone activity2.40E-04
16GO:0004148: dihydrolipoyl dehydrogenase activity2.40E-04
17GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity3.49E-04
18GO:0008276: protein methyltransferase activity3.49E-04
19GO:0004449: isocitrate dehydrogenase (NAD+) activity3.49E-04
20GO:0008641: small protein activating enzyme activity5.92E-04
21GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity5.92E-04
22GO:0004029: aldehyde dehydrogenase (NAD) activity7.24E-04
23GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity7.24E-04
24GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity7.24E-04
25GO:0004222: metalloendopeptidase activity7.87E-04
26GO:0051920: peroxiredoxin activity8.63E-04
27GO:0004144: diacylglycerol O-acyltransferase activity8.63E-04
28GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors8.97E-04
29GO:0008121: ubiquinol-cytochrome-c reductase activity1.01E-03
30GO:0008320: protein transmembrane transporter activity1.01E-03
31GO:0016209: antioxidant activity1.16E-03
32GO:0071949: FAD binding1.48E-03
33GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity1.65E-03
34GO:0008171: O-methyltransferase activity1.83E-03
35GO:0044183: protein binding involved in protein folding2.02E-03
36GO:0004129: cytochrome-c oxidase activity2.02E-03
37GO:0016491: oxidoreductase activity2.33E-03
38GO:0031624: ubiquitin conjugating enzyme binding2.62E-03
39GO:0004175: endopeptidase activity2.62E-03
40GO:0031418: L-ascorbic acid binding3.26E-03
41GO:0003756: protein disulfide isomerase activity4.44E-03
42GO:0046933: proton-transporting ATP synthase activity, rotational mechanism5.21E-03
43GO:0000287: magnesium ion binding5.56E-03
44GO:0008237: metallopeptidase activity7.18E-03
45GO:0008757: S-adenosylmethionine-dependent methyltransferase activity9.03E-03
46GO:0050897: cobalt ion binding1.04E-02
47GO:0003746: translation elongation factor activity1.11E-02
48GO:0003993: acid phosphatase activity1.14E-02
49GO:0050661: NADP binding1.21E-02
50GO:0051537: 2 iron, 2 sulfur cluster binding1.40E-02
51GO:0003735: structural constituent of ribosome1.87E-02
52GO:0051082: unfolded protein binding2.10E-02
53GO:0015035: protein disulfide oxidoreductase activity2.14E-02
54GO:0016746: transferase activity, transferring acyl groups2.14E-02
55GO:0016740: transferase activity2.25E-02
56GO:0030170: pyridoxal phosphate binding2.65E-02
57GO:0003824: catalytic activity4.09E-02
58GO:0008168: methyltransferase activity4.11E-02
59GO:0004601: peroxidase activity4.22E-02
60GO:0016788: hydrolase activity, acting on ester bonds4.28E-02
61GO:0050660: flavin adenine dinucleotide binding4.68E-02
62GO:0004497: monooxygenase activity4.92E-02
RankGO TermAdjusted P value
1GO:0005829: cytosol2.00E-05
2GO:0005783: endoplasmic reticulum3.28E-05
3GO:0032783: ELL-EAF complex5.79E-05
4GO:0008541: proteasome regulatory particle, lid subcomplex6.78E-05
5GO:0005750: mitochondrial respiratory chain complex III1.06E-04
6GO:0030134: ER to Golgi transport vesicle1.41E-04
7GO:0005901: caveola1.41E-04
8GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)4.66E-04
9GO:0032580: Golgi cisterna membrane4.67E-04
10GO:0005746: mitochondrial respiratory chain5.92E-04
11GO:0008250: oligosaccharyltransferase complex5.92E-04
12GO:0005789: endoplasmic reticulum membrane6.18E-04
13GO:0005774: vacuolar membrane6.34E-04
14GO:0045273: respiratory chain complex II1.16E-03
15GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)1.16E-03
16GO:0005773: vacuole1.47E-03
17GO:0000502: proteasome complex1.52E-03
18GO:0005794: Golgi apparatus1.81E-03
19GO:0005747: mitochondrial respiratory chain complex I1.85E-03
20GO:0030176: integral component of endoplasmic reticulum membrane2.82E-03
21GO:0005753: mitochondrial proton-transporting ATP synthase complex2.82E-03
22GO:0005758: mitochondrial intermembrane space3.26E-03
23GO:0005759: mitochondrial matrix3.35E-03
24GO:0016020: membrane3.77E-03
25GO:0005739: mitochondrion4.72E-03
26GO:0009507: chloroplast4.95E-03
27GO:0022625: cytosolic large ribosomal subunit7.38E-03
28GO:0005788: endoplasmic reticulum lumen8.08E-03
29GO:0009506: plasmodesma8.82E-03
30GO:0000151: ubiquitin ligase complex9.36E-03
31GO:0031902: late endosome membrane1.25E-02
32GO:0031966: mitochondrial membrane1.55E-02
33GO:0022626: cytosolic ribosome1.77E-02
34GO:0010287: plastoglobule2.37E-02
35GO:0022627: cytosolic small ribosomal subunit3.78E-02
36GO:0005840: ribosome3.91E-02
37GO:0009536: plastid4.57E-02
Gene type



Gene DE type