GO Enrichment Analysis of Co-expressed Genes with
AT2G46280
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0071433: cell wall repair | 0.00E+00 |
| 2 | GO:0000494: box C/D snoRNA 3'-end processing | 0.00E+00 |
| 3 | GO:0090069: regulation of ribosome biogenesis | 0.00E+00 |
| 4 | GO:1990258: histone glutamine methylation | 0.00E+00 |
| 5 | GO:0019918: peptidyl-arginine methylation, to symmetrical-dimethyl arginine | 0.00E+00 |
| 6 | GO:0031167: rRNA methylation | 2.73E-06 |
| 7 | GO:0001510: RNA methylation | 1.49E-05 |
| 8 | GO:0046686: response to cadmium ion | 2.37E-05 |
| 9 | GO:0006177: GMP biosynthetic process | 3.64E-05 |
| 10 | GO:2000232: regulation of rRNA processing | 3.64E-05 |
| 11 | GO:0055081: anion homeostasis | 3.64E-05 |
| 12 | GO:0006626: protein targeting to mitochondrion | 4.65E-05 |
| 13 | GO:0006364: rRNA processing | 5.12E-05 |
| 14 | GO:0030150: protein import into mitochondrial matrix | 7.86E-05 |
| 15 | GO:0010220: positive regulation of vernalization response | 9.09E-05 |
| 16 | GO:0055129: L-proline biosynthetic process | 9.09E-05 |
| 17 | GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 9.09E-05 |
| 18 | GO:0015865: purine nucleotide transport | 9.09E-05 |
| 19 | GO:0008033: tRNA processing | 1.55E-04 |
| 20 | GO:0008652: cellular amino acid biosynthetic process | 1.58E-04 |
| 21 | GO:0046902: regulation of mitochondrial membrane permeability | 2.33E-04 |
| 22 | GO:0018279: protein N-linked glycosylation via asparagine | 4.01E-04 |
| 23 | GO:0006412: translation | 4.13E-04 |
| 24 | GO:0009793: embryo development ending in seed dormancy | 4.32E-04 |
| 25 | GO:0006561: proline biosynthetic process | 4.92E-04 |
| 26 | GO:0006099: tricarboxylic acid cycle | 5.29E-04 |
| 27 | GO:0009088: threonine biosynthetic process | 5.88E-04 |
| 28 | GO:1901001: negative regulation of response to salt stress | 5.88E-04 |
| 29 | GO:0009423: chorismate biosynthetic process | 5.88E-04 |
| 30 | GO:0006458: 'de novo' protein folding | 5.88E-04 |
| 31 | GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c | 6.87E-04 |
| 32 | GO:0042773: ATP synthesis coupled electron transport | 6.87E-04 |
| 33 | GO:0009060: aerobic respiration | 1.01E-03 |
| 34 | GO:0043069: negative regulation of programmed cell death | 1.24E-03 |
| 35 | GO:0016485: protein processing | 1.36E-03 |
| 36 | GO:0009089: lysine biosynthetic process via diaminopimelate | 1.36E-03 |
| 37 | GO:0009073: aromatic amino acid family biosynthetic process | 1.36E-03 |
| 38 | GO:0006820: anion transport | 1.49E-03 |
| 39 | GO:0070588: calcium ion transmembrane transport | 1.89E-03 |
| 40 | GO:0034976: response to endoplasmic reticulum stress | 2.04E-03 |
| 41 | GO:0000027: ribosomal large subunit assembly | 2.18E-03 |
| 42 | GO:0006334: nucleosome assembly | 2.48E-03 |
| 43 | GO:0061077: chaperone-mediated protein folding | 2.48E-03 |
| 44 | GO:0007005: mitochondrion organization | 2.64E-03 |
| 45 | GO:0015986: ATP synthesis coupled proton transport | 3.64E-03 |
| 46 | GO:0006811: ion transport | 6.61E-03 |
| 47 | GO:0010043: response to zinc ion | 6.83E-03 |
| 48 | GO:0009853: photorespiration | 7.28E-03 |
| 49 | GO:0000154: rRNA modification | 9.42E-03 |
| 50 | GO:0009664: plant-type cell wall organization | 1.02E-02 |
| 51 | GO:0009909: regulation of flower development | 1.15E-02 |
| 52 | GO:0055085: transmembrane transport | 1.28E-02 |
| 53 | GO:0006457: protein folding | 1.31E-02 |
| 54 | GO:0000398: mRNA splicing, via spliceosome | 1.52E-02 |
| 55 | GO:0009651: response to salt stress | 1.68E-02 |
| 56 | GO:0006413: translational initiation | 1.92E-02 |
| 57 | GO:0042742: defense response to bacterium | 2.05E-02 |
| 58 | GO:0006979: response to oxidative stress | 2.07E-02 |
| 59 | GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process | 2.19E-02 |
| 60 | GO:0006470: protein dephosphorylation | 2.23E-02 |
| 61 | GO:0008380: RNA splicing | 2.29E-02 |
| 62 | GO:0015031: protein transport | 2.61E-02 |
| 63 | GO:0009826: unidimensional cell growth | 2.69E-02 |
| 64 | GO:0042254: ribosome biogenesis | 2.80E-02 |
| 65 | GO:0045454: cell redox homeostasis | 3.66E-02 |
| 66 | GO:0032259: methylation | 4.12E-02 |
| 67 | GO:0009408: response to heat | 4.25E-02 |
| 68 | GO:0048364: root development | 4.38E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1990259: histone-glutamine methyltransferase activity | 0.00E+00 |
| 2 | GO:0004735: pyrroline-5-carboxylate reductase activity | 0.00E+00 |
| 3 | GO:0004107: chorismate synthase activity | 0.00E+00 |
| 4 | GO:0030515: snoRNA binding | 3.01E-08 |
| 5 | GO:0004776: succinate-CoA ligase (GDP-forming) activity | 8.72E-08 |
| 6 | GO:0004775: succinate-CoA ligase (ADP-forming) activity | 8.72E-08 |
| 7 | GO:0008649: rRNA methyltransferase activity | 3.39E-07 |
| 8 | GO:0048037: cofactor binding | 3.64E-05 |
| 9 | GO:0005507: copper ion binding | 3.83E-05 |
| 10 | GO:0003735: structural constituent of ribosome | 4.48E-05 |
| 11 | GO:0003938: IMP dehydrogenase activity | 9.09E-05 |
| 12 | GO:0070180: large ribosomal subunit rRNA binding | 1.58E-04 |
| 13 | GO:0008469: histone-arginine N-methyltransferase activity | 1.58E-04 |
| 14 | GO:0010181: FMN binding | 1.82E-04 |
| 15 | GO:0003729: mRNA binding | 1.88E-04 |
| 16 | GO:0004072: aspartate kinase activity | 2.33E-04 |
| 17 | GO:0008276: protein methyltransferase activity | 2.33E-04 |
| 18 | GO:0005471: ATP:ADP antiporter activity | 4.01E-04 |
| 19 | GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity | 4.01E-04 |
| 20 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 4.02E-04 |
| 21 | GO:0004017: adenylate kinase activity | 5.88E-04 |
| 22 | GO:0015288: porin activity | 7.90E-04 |
| 23 | GO:0008308: voltage-gated anion channel activity | 8.97E-04 |
| 24 | GO:0051082: unfolded protein binding | 1.20E-03 |
| 25 | GO:0044183: protein binding involved in protein folding | 1.36E-03 |
| 26 | GO:0005388: calcium-transporting ATPase activity | 1.62E-03 |
| 27 | GO:0015266: protein channel activity | 1.62E-03 |
| 28 | GO:0008266: poly(U) RNA binding | 1.76E-03 |
| 29 | GO:0051536: iron-sulfur cluster binding | 2.18E-03 |
| 30 | GO:0003954: NADH dehydrogenase activity | 2.18E-03 |
| 31 | GO:0005528: FK506 binding | 2.18E-03 |
| 32 | GO:0004540: ribonuclease activity | 2.48E-03 |
| 33 | GO:0004298: threonine-type endopeptidase activity | 2.48E-03 |
| 34 | GO:0003756: protein disulfide isomerase activity | 2.96E-03 |
| 35 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 3.47E-03 |
| 36 | GO:0003713: transcription coactivator activity | 3.47E-03 |
| 37 | GO:0003723: RNA binding | 3.64E-03 |
| 38 | GO:0008137: NADH dehydrogenase (ubiquinone) activity | 4.00E-03 |
| 39 | GO:0016597: amino acid binding | 4.95E-03 |
| 40 | GO:0004721: phosphoprotein phosphatase activity | 5.76E-03 |
| 41 | GO:0005524: ATP binding | 5.94E-03 |
| 42 | GO:0046872: metal ion binding | 6.61E-03 |
| 43 | GO:0004222: metalloendopeptidase activity | 6.61E-03 |
| 44 | GO:0003746: translation elongation factor activity | 7.28E-03 |
| 45 | GO:0042393: histone binding | 7.97E-03 |
| 46 | GO:0051539: 4 iron, 4 sulfur cluster binding | 7.97E-03 |
| 47 | GO:0051537: 2 iron, 2 sulfur cluster binding | 9.17E-03 |
| 48 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 9.68E-03 |
| 49 | GO:0000166: nucleotide binding | 1.01E-02 |
| 50 | GO:0005516: calmodulin binding | 1.52E-02 |
| 51 | GO:0005509: calcium ion binding | 1.89E-02 |
| 52 | GO:0003743: translation initiation factor activity | 2.26E-02 |
| 53 | GO:0008168: methyltransferase activity | 2.69E-02 |
| 54 | GO:0016491: oxidoreductase activity | 2.70E-02 |
| 55 | GO:0008233: peptidase activity | 3.18E-02 |
| 56 | GO:0004722: protein serine/threonine phosphatase activity | 3.91E-02 |
| 57 | GO:0003924: GTPase activity | 4.25E-02 |
| 58 | GO:0009055: electron carrier activity | 4.46E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005832: chaperonin-containing T-complex | 0.00E+00 |
| 2 | GO:0005730: nucleolus | 1.37E-14 |
| 3 | GO:0031428: box C/D snoRNP complex | 1.02E-08 |
| 4 | GO:0032040: small-subunit processome | 3.23E-07 |
| 5 | GO:0005773: vacuole | 9.71E-07 |
| 6 | GO:0005743: mitochondrial inner membrane | 3.41E-06 |
| 7 | GO:0015030: Cajal body | 2.32E-05 |
| 8 | GO:0022625: cytosolic large ribosomal subunit | 3.91E-05 |
| 9 | GO:0005758: mitochondrial intermembrane space | 7.86E-05 |
| 10 | GO:0070545: PeBoW complex | 9.09E-05 |
| 11 | GO:0005741: mitochondrial outer membrane | 9.79E-05 |
| 12 | GO:0005774: vacuolar membrane | 1.71E-04 |
| 13 | GO:0022626: cytosolic ribosome | 1.88E-04 |
| 14 | GO:0005829: cytosol | 2.70E-04 |
| 15 | GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) | 3.14E-04 |
| 16 | GO:0005788: endoplasmic reticulum lumen | 3.27E-04 |
| 17 | GO:0008250: oligosaccharyltransferase complex | 4.01E-04 |
| 18 | GO:0015934: large ribosomal subunit | 4.64E-04 |
| 19 | GO:0005840: ribosome | 6.63E-04 |
| 20 | GO:0005739: mitochondrion | 8.97E-04 |
| 21 | GO:0046930: pore complex | 8.97E-04 |
| 22 | GO:0019773: proteasome core complex, alpha-subunit complex | 8.97E-04 |
| 23 | GO:0005742: mitochondrial outer membrane translocase complex | 8.97E-04 |
| 24 | GO:0005747: mitochondrial respiratory chain complex I | 1.04E-03 |
| 25 | GO:0005618: cell wall | 1.11E-03 |
| 26 | GO:0005740: mitochondrial envelope | 1.24E-03 |
| 27 | GO:0005852: eukaryotic translation initiation factor 3 complex | 1.36E-03 |
| 28 | GO:0005750: mitochondrial respiratory chain complex III | 1.76E-03 |
| 29 | GO:0005753: mitochondrial proton-transporting ATP synthase complex | 1.89E-03 |
| 30 | GO:0045271: respiratory chain complex I | 2.33E-03 |
| 31 | GO:0005839: proteasome core complex | 2.48E-03 |
| 32 | GO:0005744: mitochondrial inner membrane presequence translocase complex | 2.96E-03 |
| 33 | GO:0016592: mediator complex | 4.19E-03 |
| 34 | GO:0009506: plasmodesma | 9.13E-03 |
| 35 | GO:0031966: mitochondrial membrane | 1.02E-02 |
| 36 | GO:0000502: proteasome complex | 1.07E-02 |
| 37 | GO:0005681: spliceosomal complex | 1.20E-02 |
| 38 | GO:0016607: nuclear speck | 1.23E-02 |
| 39 | GO:0016020: membrane | 1.48E-02 |
| 40 | GO:0005654: nucleoplasm | 1.58E-02 |
| 41 | GO:0005759: mitochondrial matrix | 1.89E-02 |
| 42 | GO:0009705: plant-type vacuole membrane | 2.02E-02 |
| 43 | GO:0005737: cytoplasm | 2.54E-02 |
| 44 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 2.95E-02 |
| 45 | GO:0005783: endoplasmic reticulum | 4.20E-02 |